DY258369

Overview
NameDY258369
Unique NameDY258369
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1103 contig Ccv1_Contig1103:1..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258369 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROAN (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila ananassae GN=GF15731 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.767e-12
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 2
Query:  341 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 511
            K  + +GA+E++TRG GSK+M KMG++ G GLG D +GIV P++A  LPK R L AC
Sbjct:  299 KPTEKLGAWEEYTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPKGRSLDAC 355          
BLAST of DY258369 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROMO (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila mojavensis GN=GI17578 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.551e-11
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 2
Query:  341 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 511
            K  + +GA+E++TRG GSK+MA MG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  298 KPTERLGAWEQYTRGIGSKLMANMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 354          
BLAST of DY258369 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROGR (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila grimshawi GN=GH11061 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.551e-11
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 2
Query:  341 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 511
            K  + +GA+E++TRG GSK+MA MG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  301 KPTEKLGAWEQYTRGIGSKLMANMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 357          
BLAST of DY258369 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROVI (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila virilis GN=GJ17921 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 2
Query:  341 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 511
            K  + +GA+E++TRG GSK+MA MG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  297 KPNERLGAWEQYTRGIGSKLMASMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 353          
BLAST of DY258369 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROYA (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila yakuba GN=GE18884 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 2
Query:  341 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 511
            K  + +GA+E+ TRG GSK+M KMG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  300 KPTERLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 356          
BLAST of DY258369 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROME (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila melanogaster GN=CG4709 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 2
Query:  341 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 511
            K  + +GA+E+ TRG GSK+M KMG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  300 KPTERLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 356          
BLAST of DY258369 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROER (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila erecta GN=GG10072 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 2
Query:  341 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 511
            K  + +GA+E+ TRG GSK+M KMG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  300 KPTERLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 356          
BLAST of DY258369 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROPS (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila pseudoobscura pseudoobscura GN=GA18374 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 2
Query:  341 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 511
            K  + +GA+E++TRG GSK+M KMG++ G GLG + +GIV P++A  LP+ R L AC
Sbjct:  298 KPTEKLGAWEQYTRGIGSKLMEKMGYIHGTGLGSEGRGIVTPVSAQILPQGRSLDAC 354          
BLAST of DY258369 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROPE (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila persimilis GN=GL18949 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 2
Query:  341 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 511
            K  + +GA+E++TRG GSK+M KMG++ G GLG + +GIV P++A  LP+ R L AC
Sbjct:  298 KPTEKLGAWEQYTRGIGSKLMEKMGYIHGTGLGSEGRGIVTPVSAQILPQGRSLDAC 354          
BLAST of DY258369 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROSI (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila simulans GN=GD23643 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 2
Query:  341 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 511
            K    +GA+E+ TRG GSK+M KMG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  300 KPTDRLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 356          
The following BLAST results are available for this feature:
BLAST of DY258369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ZGPAT_DROAN8.767e-1254.39Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROMO2.551e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROGR2.551e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROVI4.351e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROYA5.682e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROME5.682e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROER5.682e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROPS7.422e-1150.88Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROPE7.422e-1150.88Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROSI9.693e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAI1BE06FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258369 ID=DY258369; Name=DY258369; organism=Citrus clementina; type=EST; length=652bp
AAGTGGCATATTGCAATCTGATAGTGTTGAGATCAGAACTGTTGATGCTG
TAGAGATAAATGAGACTTTTGAAAGTAAGGGTACAGTCAGCTCAACACAG
ATCGGTGCATTTGAGGTTCACACAAAGGGTTTTGGATCCAAGATGATGGC
AAAAATGGGATATGTAGAGGGGGGAGGATTAGGGAAGGATGGTCAAGGTA
TGTCTAAACCCATTGAAGCCATCCAACGGCCTAAGAAGCTTGGGCTGGGT
GTGGAATTTTCCAACACTGATGATGACTCGTCAAGAAAGGAATCTCGCAG
TGACTCGGCGAGGAAGGAATCTCGCAGTAACTCGGCGAAGAAGGGAGCTC
AAAACATTGGAGCTTTTGAAAAGCACACCAGAGGTTTTGGATCAAAGATG
ATGGCAAAGATGGGCTTTGTTGAAGGCATGGGCTTGGGCAGAGATTCCCA
AGGCATTGTCAACCCCTTGGCTGCTGTCAGGCTACCCAAATCACGAGGCT
TGGGCGCCTGTAGTTAGATGTTATGGTTATTGAAGTAGCAGAAAAGGGTA
AGGTGGTGTACCTTATAATCTATTGGAATTGAACATTTCGTACGTCCATT
ATTTCTAGGGGTATTTAAAATTCAATTCCATTCGATCAATTCATTTTATC
CG
back to top