DY258375

Overview
NameDY258375
Unique NameDY258375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1289
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1107 contig Ccv1_Contig1107:1..1289. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY258375 vs. ExPASy Swiss-Prot
Match: UBR7_HUMAN (Putative E3 ubiquitin-protein ligase UBR7 OS=Homo sapiens GN=UBR7 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 7.256e-11
Identity = 56/260 (21.54%), Postives = 105/260 (40.38%), Query Frame = 1 
Query:   16 YEDFICKACSAVCSFLSTYPQTIWAA-------GLRRNAGC-----------NTNKDKDVLEEIPSAGGSGKLENGICSNGSPREDNAIANTSAESVTGGKGVTGESSKKIFDLVQCMNDGGAHIACLFGDNIVVDGSISLTKPLFLSKNWRATLCRCKKCLSMYEQKRVPYLIDEEDSIAEYERTAXXXXXXXXXXXXGAELTFLNKLGHVEKMEILNGIADMKDEFHNFLQSF-DPSKAITSDDVHQIFENLAKKRKR 738
            +++ +C+AC   CSFL  Y   +          GL RN                ++D  + E++P  G     E  +  N  P   ++ + +  ++V   + +  ES              G  +  L    ++   + +     +   NWR+ LC C+ C+ MY    V +L DE D++  YE                  L+ +N+   V+++E++    D+K E  ++L+ F D    +  +D+ Q FE    K++R
Sbjct:  177 FQEMVCQACMKRCSFLWAYAAQLAVTKISTEDDGLVRNIDGIGDQEVIKPENGEHQDSTLKEDVPEQGKDDVREVKVEQNSEPCAGSS-SESDLQTVFKNESLNAESKS------------GCKLQELKAKQLIKKDTAT-----YWPLNWRSKLCTCQDCMKMYGDLDVLFLTDEYDTVLAYENKGKIAQATDRSDPLMDTLSSMNR---VQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRR 415
The following BLAST results are available for this feature:
BLAST of DY258375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UBR7_HUMAN7.256e-1121.54Putative E3 ubiquitin-protein ligase UBR7 OS=Homo ... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAI1BG02FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258375 ID=DY258375; Name=DY258375; organism=Citrus clementina; type=EST; length=1289bp
GAAGGAGAGCCAGTGTATGAGGATTTCATATGCAAGGCATGCTCGGCAGT
TTGTTCTTTTCTGAGCACATATCCTCAAACCATATGGGCAGCTGGGTTGC
GACGAAATGCTGGTTGTAATACTAACAAGGATAAAGATGTATTGGAAGAG
ATCCCTTCAGCTGGTGGTTCTGGAAAGCTTGAAAATGGTATTTGTTCTAA
TGGTTCCCCTAGAGAAGATAATGCAATTGCTAATACTAGTGCTGAATCTG
TGACTGGTGGGAAGGGTGTTACTGGAGAAAGTTCCAAGAAAATTTTTGAT
TTAGTTCAATGCATGAATGATGGTGGTGCGCATATTGCTTGTCTTTTTGG
AGATAATATAGTGGTTGATGGCTCTATTTCACTAACTAAACCCCTATTCC
TTTCCAAAAATTGGAGGGCTACTCTCTGTAGATGCAAAAAATGCTTAAGT
ATGTACGAGCAAAAGCGTGTTCCTTATCTTATTGATGAGGAGGACTCAAT
AGCAGAGTATGAAAGAACAGCAAAGCAAAAGAGGGAAGAAAAGCTGCAGC
AACAAGAGGGTGCTGAGTTAACTTTTTTGAACAAACTTGGTCATGTGGAG
AAAATGGAGATTCTGAATGGGATTGCAGACATGAAGGATGAATTTCATAA
CTTCCTGCAATCATTTGACCCATCAAAAGCAATCACATCTGATGATGTTC
ATCAGATTTTTGAGAATCTTGCAAAGAAGCGTAAGCGTGAGTGAAACTCT
TTGAAGGTTTCTTTTTTTTTTTTTTTTTTAACTGCAGTTGTGTTGCCTGC
GTCAACTTAAACCTCATGTGTGGTTGCTTTTGGACTGATAAAAGCATTCT
GTTTCCAACTGTTTTAACTTTTTTAGTTTAAATTATCTAAATACAACCTG
CTTCCAAATGGAAATTTTGTGGTTTAAAAAAAAAAAAAAAAAAAAACCCA
CTTTTCTTGACCAAGTTGGCCTTTTAAAAAAGCCATTCCTTTACAATTTT
TTTCCCCCAAAAGGGCCCCTAACCACCCAAAAAAAAATCTTTTTTTGCCC
CCCCCCCTAAACCCCCCCTAAGGGGAGCTCAATAAAAGGGGCCAAAACCT
TTTTCCCGGGCCCCTCCGGGCCCCCGGTCCCCAAAAACCCCTAAAATGTT
TCCTTTGTCCCAAAAAAAAAAAAAAAATTTCTCCTCTGGTTTAAAAAAAA
AACCCCTCCCCCCCAACCCCCAAAAAAAAAAACCCTGCCACTTTTTTTTT
TTCCTTTCTTTCTTGCGGAAAATTTTTATTACACAACAC
back to top