DY258452

Overview
NameDY258452
Unique NameDY258452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258452 vs. ExPASy Swiss-Prot
Match: SUCA2_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2)

HSP 1 Score: 350.132 bits (897), Expect = 8.087e-96
Identity = 171/202 (84.65%), Postives = 182/202 (90.10%), Query Frame = 2
Query:    2 VCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGVGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRGL 607
            VCITEGIPQHDMVRVKAALN QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPG++GIVSRSGTLTYEAVFQTT VGLGQSTCVG+GGDPFNGTNFVDCLEKF VDPQT               DAAALIKE+GT+KPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIK+LR+AGV VVESPAKIG+AM E+F++RGL
Sbjct:  138 VCITEGIPQHDMVRVKAALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKENGTDKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKSLRDAGVKVVESPAKIGAAMFELFQERGL 339          
BLAST of DY258452 vs. ExPASy Swiss-Prot
Match: SUCA_ORYSJ (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=Os07g0577700 PE=1 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 1.056e-95
Identity = 172/202 (85.15%), Postives = 180/202 (89.11%), Query Frame = 2
Query:    2 VCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGVGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRGL 607
            VCITEGIPQHDMV+VKAALN+QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT VGLGQSTCVG+GGDPFNGTNFVDCLEKF+ DPQT               DAAA I+ES T+KPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIK LREAGVTVVESPAKIGS M E+FKQRG+
Sbjct:  128 VCITEGIPQHDMVKVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFVDDPQTEGIVLIGEIGGTAEEDAAAFIQESKTQKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKALREAGVTVVESPAKIGSTMFEIFKQRGM 329          
BLAST of DY258452 vs. ExPASy Swiss-Prot
Match: SUCA1_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 8.941e-95
Identity = 171/202 (84.65%), Postives = 179/202 (88.61%), Query Frame = 2
Query:    2 VCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGVGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRGL 607
            VCITEGIPQHDMVRVK ALN QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPG++GIVSRSGTLTYEAVFQTT VGLGQSTCVG+GGDPFNGTNFVDCLEKF VDPQT               DAAALIK SGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIK+L +AGV VVESPAKIGSAM E+F++RGL
Sbjct:  143 VCITEGIPQHDMVRVKHALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKASGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKSLNDAGVKVVESPAKIGSAMYELFQERGL 344          
BLAST of DY258452 vs. ExPASy Swiss-Prot
Match: SUCA_DICDI (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=scsA PE=1 SV=3)

HSP 1 Score: 286.574 bits (732), Expect = 1.098e-76
Identity = 136/200 (68.00%), Postives = 161/200 (80.50%), Query Frame = 2
Query:    2 VCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGVGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQR 601
            VCITEGIPQ DMV+VK  LN+Q+KTRLIGPNCPGIIKPGECKIGIMPG+IHKPG++GIVSRSGTLTYEAV QTT VGLGQSTC+G+GGDPFNGTNF+DCL+ F  DPQT               +AA  + ++ T+KPVV+FIAGL+APPGRRMGHAGAI+SGGKG A  KI+ L+ AGVTV  SPAK+G  +L+   ++
Sbjct:  113 VCITEGIPQQDMVKVKYLLNKQNKTRLIGPNCPGIIKPGECKIGIMPGHIHKPGKIGIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGGDPFNGTNFIDCLKMFTQDPQTEGIILIGEIGGEAEEEAAQWLIDNPTDKPVVSFIAGLSAPPGRRMGHAGAIISGGKGDANSKIEALKAAGVTVTFSPAKLGETILQKMNEK 312          
BLAST of DY258452 vs. ExPASy Swiss-Prot
Match: SUCA_CAEEL (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=C05G5.4 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.484e-73
Identity = 135/200 (67.50%), Postives = 155/200 (77.50%), Query Frame = 2
Query:    2 VCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGVGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKE---SGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVF 592
            VCITEGIPQHDMVRVK+ L +Q+KTRL+GPNCPGII   +CKIGIMPG+IHK G +GIVSRSGTLTYEAV QTT VG GQ+ CVG+GGDPFNGTNF+DCL  FL DP+T               +AAA +KE       KPVV+FIAG+TAPPGRRMGHAGAI+SGGKGTA DKI  LREAGV V +SPAK+G++M   F
Sbjct:  119 VCITEGIPQHDMVRVKSRLLKQNKTRLVGPNCPGIISADQCKIGIMPGHIHKRGCIGIVSRSGTLTYEAVHQTTQVGFGQTLCVGIGGDPFNGTNFIDCLNVFLEDPETKGIILIGEIGGSAEEEAAAYLKEHNSGANRKPVVSFIAGVTAPPGRRMGHAGAIISGGKGTAADKINALREAGVVVTDSPAKLGTSMATAF 318          
BLAST of DY258452 vs. ExPASy Swiss-Prot
Match: SUCA_RAT (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Rattus norvegicus GN=Suclg1 PE=2 SV=2)

HSP 1 Score: 274.633 bits (701), Expect = 4.318e-73
Identity = 135/203 (66.50%), Postives = 157/203 (77.34%), Query Frame = 2
Query:    2 VCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGVGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGT---EKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQR 601
            VCITEGIPQ DMVRVK  L RQ KTRLIGPNCPGII PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGLGQS C+G+GGDPFNGTNF+DCL+ FL DP T               +AA  +KE  +    KPVV+FIAG+TAPPGRRMGHAGAI++GGKG A++KI  L+ AGV V  SPA++G+ M + F++R
Sbjct:  141 VCITEGIPQQDMVRVKHKLTRQGKTRLIGPNCPGIINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCIGIGGDPFNGTNFIDCLDVFLKDPATEGIVLIGEIGGHAEENAAEFLKEHNSGPKAKPVVSFIAGITAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVIVSMSPAQLGTCMYKEFEKR 343          
BLAST of DY258452 vs. ExPASy Swiss-Prot
Match: SUCA_MOUSE (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Mus musculus GN=Suclg1 PE=1 SV=4)

HSP 1 Score: 271.552 bits (693), Expect = 3.655e-72
Identity = 133/203 (65.52%), Postives = 157/203 (77.34%), Query Frame = 2
Query:    2 VCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGVGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGT---EKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQR 601
            VCITEGIPQ DMVRVK  L RQ  TRLIGPNCPG+I PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGLGQS C+G+GGDPFNGT+F+DCLE FL DP T               +AAA +KE  +    KPVV+FIAG+TAPPGRRMGHAGAI++GGKG A++KI  L+ AGV V  SPA++G+ + + F++R
Sbjct:  141 VCITEGIPQQDMVRVKHRLTRQGTTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCIGIGGDPFNGTDFIDCLEVFLNDPATEGIILIGEIGGHAEENAAAFLKEHNSGPKAKPVVSFIAGITAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEFEKR 343          
BLAST of DY258452 vs. ExPASy Swiss-Prot
Match: SUCA_BOVIN (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Bos taurus GN=SUCLG1 PE=2 SV=3)

HSP 1 Score: 270.396 bits (690), Expect = 8.143e-72
Identity = 135/203 (66.50%), Postives = 156/203 (76.85%), Query Frame = 2
Query:    2 VCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGVGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGT---EKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQR 601
            VCITEGIPQ DMVRVK  L RQ KTRL+GPNCPG+I PGECKIGIMPG+IHK GRVGIVSRSGTLTYEAV QTT VGLGQS CVG+GGDPFNGT+F DCLE FL DP T               +AA  +K+  +    KPVV+FIAGLTAPPGRRMGHAGAI++GGKG A++KI  L+ AGV V  SPA++G+ M + F++R
Sbjct:  141 VCITEGIPQQDMVRVKHKLLRQGKTRLVGPNCPGVINPGECKIGIMPGHIHKKGRVGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKAKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKIAALQSAGVVVSMSPAQLGTTMYKEFEKR 343          
BLAST of DY258452 vs. ExPASy Swiss-Prot
Match: SUCA_PIG (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Sus scrofa GN=SUCLG1 PE=1 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 1.814e-71
Identity = 134/203 (66.01%), Postives = 156/203 (76.85%), Query Frame = 2
Query:    2 VCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGVGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGT---EKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQR 601
            VCITEGIPQ DMVRVK  L RQ KTRLIGPNCPG+I PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGLGQS CVG+GGDPFNGT+F DCLE FL DP T               +AA  +K+  +    KPVV+FIAGLTAPPGRRMGHAGAI++GGKG A++KI  L+ AGV V  SPA++G+ + + F++R
Sbjct:  141 VCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEKR 343          
BLAST of DY258452 vs. ExPASy Swiss-Prot
Match: SUCD_RICFE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia felis GN=sucD PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 5.278e-71
Identity = 130/199 (65.33%), Postives = 155/199 (77.89%), Query Frame = 2
Query:    2 VCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGVGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQ 598
            VCITEGIP  DMV+VK AL   SKTRLIGPNCPG+I PGECKIGIMPG+IHK G +GIVSRSGTLTYEAV QTT VGLGQSTCVG+GGDP NGTNFVDC++ FL D +T               DAA  IK+S  +KP+V+FIAG+TAPPG+RMGHAGAI++GGKG+A+DK++ L+ AGVT+  SPA IG  M ++  +
Sbjct:   94 VCITEGIPVLDMVKVKRALVG-SKTRLIGPNCPGVITPGECKIGIMPGHIHKRGTIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPVNGTNFVDCIDMFLKDDETKAIIMIGEIGGNAEEDAAEFIKQSKIKKPIVSFIAGITAPPGKRMGHAGAIIAGGKGSAEDKLEALQSAGVTITRSPADIGKTMFDLLNK 291          
The following BLAST results are available for this feature:
BLAST of DY258452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
SUCA2_ARATH8.087e-9684.65Succinyl-CoA ligase [GDP-forming] subunit alpha-2,... [more]
SUCA_ORYSJ1.056e-9585.15Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCA1_ARATH8.941e-9584.65Succinyl-CoA ligase [GDP-forming] subunit alpha-1,... [more]
SUCA_DICDI1.098e-7668.00Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_CAEEL1.484e-7367.50Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCA_RAT4.318e-7366.50Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_MOUSE3.655e-7265.52Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_BOVIN8.143e-7266.50Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_PIG1.814e-7166.01Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCD_RICFE5.278e-7165.33Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1DD06FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258452 ID=DY258452; Name=DY258452; organism=Citrus clementina; type=EST; length=798bp
CGTCTGTATCACCGAAGGAATCCCTCAACATGATATGGTGCGAGTGAAAG
CTGCTCTAAACAGGCAATCTAAAACTCGGCTGATTGGTCCCAACTGCCCT
GGTATCATCAAACCTGGAGAATGTAAGATTGGCATTATGCCTGGGTATAT
TCACAAACCTGGGCGGGTTGGAATTGTTTCTCGATCTGGTACCTTGACCT
ACGAAGCAGTTTTTCAAACAACTGTAGTTGGCCTTGGACAATCAACCTGT
GTAGGTGTAGGTGGGGATCCTTTTAATGGGACAAACTTTGTTGATTGCCT
TGAAAAGTTCCTAGTTGATCCCCAGACAGAAGGTATTATTCTTATAGGAG
AGATCGGTGGGACTGCAGAAGAGGATGCCGCTGCCTTGATAAAGGAAAGT
GGGACTGAGAAGCCCGTTGTTGCTTTTATTGCGGGACTAACAGCTCCCCC
TGGCCGCCGTATGGGTCATGCTGGAGCTATCGTCTCTGGTGGGAAGGGCA
CGGCTCAAGACAAAATTAAGACCCTCAGGGAAGCCGGAGTGACAGTGGTA
GAGTCTCCCGCAAAAATTGGCTCTGCTATGCTTGAGGTTTTCAAGCAACG
TGGCCTGGCAAGTTAGTTTTGATAAAAGAAACACTAGAGTTCTATACAGC
TTTTTTGCACAATGTCAAAAAATTGTGCTTCTCAACATTTTTATTTTGAA
ATTGATTTTGATTCTGGTAGAGTTCTTGGAAATTCAAAGTTTTCCCCCCA
TTCAGCACCCTAACGGGAATTGATTATACAATTAATAAAGCTTTTTTT
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