DY258471

Overview
NameDY258471
Unique NameDY258471
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1281
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258471_ssr156 microsatellite DY258471_ssr156:156..169. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of DY258471 vs. ExPASy Swiss-Prot
Match: NPR1_ARATH (Regulatory protein NPR1 OS=Arabidopsis thaliana GN=NPR1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.229e-20
Identity = 69/241 (28.63%), Postives = 129/241 (53.53%), Query Frame = 2 
Query:  179 LNMVLDGIMENANEKSASLSFVSSNPTCWSI-----NQSTGTCDLDNLNLRRQS-----SNPEEPSLDAEIVV-EGKSVAVNRSILSERSQFFRRLFNL--RNDGSVSEGKPKYLLTDLVPHGKVGYEAFNDTLHYIYTGKLKAPPPEVSACVDDACVHVSCPPTINYVIELMYASAALQMKKLVIRLELWLLNLVEKALVEDVIPILVAALHCQLNHPRSF--CIQRIAKSNLDNVCLEK 856
            ++  +DG  ++   + +S SFV+++ T  SI      Q     D+  L L   S      +P++   DA++V+ +G+ V+ +R +LS RS FF+       +   S +    K  L ++    +VG+++    L Y+Y+ +++ PP  VS C D+ C HV+C P +++++E++Y +   ++ +L+   +  LL++V+K ++ED + IL  A  C     +    C + I KSN+D V LEK
Sbjct:    1 MDTTIDGFADSY--EISSTSFVATDNTDSSIVYLAAEQVLTGPDVSALQLLSNSFESVFDSPDDFYSDAKLVLSDGREVSFHRCVLSARSSFFKSALAAAKKEKDSNNTAAVKLELKEIAKDYEVGFDSVVTVLAYVYSSRVRPPPKGVSECADENCCHVACRPAVDFMLEVLYLAFIFKIPELITLYQRHLLDVVDKVVIEDTLVILKLANICGKACMKLLDRCKEIIVKSNVDMVSLEK 239
The following BLAST results are available for this feature:
BLAST of DY258471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NPR1_ARATH2.229e-2028.63Regulatory protein NPR1 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1DG05FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258471 ID=DY258471; Name=DY258471; organism=Citrus clementina; type=EST; length=1281bp
GCCTGCGGTCGGCGTTAGAGGCAACTGTCACTCAATCGCGTACAAGATCT
TGTAGGTGAAAATTTCAGCTTCAAAGACCAAAGCTAATCATCCAGCAATT
CAGTGAAGAAACCAAGACACAGTGGCTCATTGTGATTGATAGTATTCTTT
CTTTGATATATATATATATAGATTCAGTTTGAATATGGTTCTTGATGGTA
TCATGGAAAATGCGAACGAAAAGTCAGCATCTTTGAGTTTTGTCTCATCA
AATCCGACTTGTTGGTCCATTAATCAATCAACAGGCACTTGTGATCTTGA
TAATTTGAACTTAAGGAGGCAAAGCAGCAATCCTGAAGAGCCGTCCCTTG
ACGCTGAGATTGTTGTTGAGGGCAAATCAGTGGCGGTTAATCGCAGCATA
TTGTCTGAGCGCAGTCAATTTTTTCGTCGGCTTTTTAATTTGAGAAATGA
TGGTTCTGTCAGTGAGGGGAAACCCAAGTATCTTTTGACTGATTTGGTGC
CTCATGGGAAGGTTGGATATGAAGCTTTCAATGATACCTTGCATTATATT
TACACTGGGAAGCTTAAGGCACCTCCTCCAGAAGTGTCCGCGTGTGTTGA
TGATGCTTGTGTTCATGTTTCTTGCCCTCCTACTATTAATTATGTTATTG
AGTTGATGTATGCTTCTGCTGCTCTTCAGATGAAAAAACTCGTTATTCGT
TTAGAGCTTTGGCTTCTGAACTTGGTTGAGAAGGCTCTTGTGGAAGATGT
AATCCCAATTCTCGTGGCTGCCTTGCATTGCCAACTGAACCACCCTCGTT
CTTTCTGCATCCAGAGAATTGCAAAGTCAAATCTTGACAATGTTTGTCTC
GAGAAAGGCTTCCTGATGAAGTTTCAAGGAAATCAAATCACTCCGTGTCA
AATCTAACCGGGATTCTGAAGCTAATAAAAGAAGAAATGGATCCTAAGCA
TGGAAAAATATTCGAAAAATCCCCCAGGGCCCTGGGACTCGAAAGAAGTT
AAAACGGTTGAACCTTCCTTCTGGAAGATTCCAGTGGCCCCCCCGGAAGA
AGCCTTACCCCCCGCCCCTAGGCCGCGGCCCACCCGCACCCCCAAGGGTT
TTTAAAAGAAGGGCCTAAATAGGGGCCCCGGCCGGGGTCCCAACTCTTAA
GGAAAAACAAAAAAAAAACCAGGCCCCCCTCCTGGGGGGGGCGGCGGGGG
TACAAAGAGCACCCCAAAAAGAGTGAGGGGGGAGGGGGGGCGGTTGGAGA
GAAAGGGGGGGGACACCGCGGGCCCCCCCCC
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