DY258513

Overview
NameDY258513
Unique NameDY258513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1205
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10184 contig Ccv1_Contig10184:8..1212. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258513 vs. ExPASy Swiss-Prot
Match: PSB5B_ARATH (Proteasome subunit beta type-5-B OS=Arabidopsis thaliana GN=PBE2 PE=1 SV=1)

HSP 1 Score: 416.387 bits (1069), Expect = 1.698e-115
Identity = 210/265 (79.25%), Postives = 219/265 (82.64%), Query Frame = 3
Query:   84 MKLDTSGLESTSPF--FGSGDELCPEXXXXXXXXXXXXTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGKLHNHYYPVTPHTGE 872
            MKLDTSGLE+T P   FGS  E+               TDFD FQK     +K AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISV+GASKLLAN+LYSYRGMGLSVGTMIAGWDETGPGLYYVD+EGGRLKG RFSVGSGSPYAYGVLDSGYKFDMS+          IYHATFRD ASGGVASVY+VGP GW KLSGDDVG+LH HYYPV P T E
Sbjct:    1 MKLDTSGLETTMPVIGFGSNSEMLDGFSSAPSFDLPRTTDFDGFQKKAVEMVKPAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGYKFDMSVEEASELARRSIYHATFRDGASGGVASVYHVGPQGWTKLSGDDVGELHYHYYPVAPITAE 265          
BLAST of DY258513 vs. ExPASy Swiss-Prot
Match: PSB5A_ARATH (Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1 PE=1 SV=1)

HSP 1 Score: 415.231 bits (1066), Expect = 3.783e-115
Identity = 207/265 (78.11%), Postives = 219/265 (82.64%), Query Frame = 3
Query:   84 MKLDTSGLESTSPF--FGSGDELCPEXXXXXXXXXXXXTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGKLHNHYYPVTPHTGE 872
            MKLDTSG E++ P   FGS  ++  E             +FD FQK  K  LKHAKGTTTLAFIFK GVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISV+GASKLLAN+LYSYRGMGLSVGTMIAGWDETGPGLYYVD+EGGRLKG RFSVGSGSPYAYGVLDSGYK+DMS+          IYHATFRD ASGGVASVY+VGP GW KLSGDDVG+LH HYYPV P T E
Sbjct:    1 MKLDTSGFETSMPMIGFGSSSDMLDELSSVPSFDLPRTKEFDGFQKKAKDMLKHAKGTTTLAFIFKGGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGYKYDMSVEEASELARRSIYHATFRDGASGGVASVYHVGPEGWTKLSGDDVGELHYHYYPVAPATAE 265          
BLAST of DY258513 vs. ExPASy Swiss-Prot
Match: PSB5_SPIOL (Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 408.297 bits (1048), Expect = 4.625e-113
Identity = 203/263 (77.19%), Postives = 217/263 (82.51%), Query Frame = 3
Query:   84 MKLDTSGLESTSPFFGSGDELCPEXXXXXXXXXXXXTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGKLHNHYYPVTPHTGE 872
            MKLDTSGLEST+P F   D +               TDFD FQK+    +K AKGTTTLAFIFK GVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILY+YRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKG RFSVGSGSPYAYGVLD+GYK+DM++          IYHAT+RD ASGGV SVY+VGP+GWKK++GDDVG LH  YYPV P T E
Sbjct:    1 MKLDTSGLESTAPIFRRSDFVFDGLQMTPSFDLPNPTDFDGFQKEAVQMVKPAKGTTTLAFIFKHGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYNYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGMRFSVGSGSPYAYGVLDNGYKYDMTVEEASELARRAIYHATYRDGASGGVVSVYHVGPDGWKKVTGDDVGDLHFQYYPVVPATVE 263          
BLAST of DY258513 vs. ExPASy Swiss-Prot
Match: PSB5_PONAB (Proteasome subunit beta type-5 OS=Pongo abelii GN=PSMB5 PE=2 SV=3)

HSP 1 Score: 271.166 bits (692), Expect = 8.823e-72
Identity = 128/205 (62.44%), Postives = 156/205 (76.10%), Query Frame = 3
Query:  246 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGKLHNHYYPVTP 860
            GTTTLAF F+ GV+VAADSRA+ G YI+SQ+VKK+IEINPY+LGTMAGGAADC FW R L  +CR++EL NK RISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ G  FSVGSGS YAYGV+D GY +D+ +          IY AT+RDA SGG  ++Y+V  +GW ++S D+V  LH  Y   TP
Sbjct:   59 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSGSTP 263          
BLAST of DY258513 vs. ExPASy Swiss-Prot
Match: PSB5_HUMAN (Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3)

HSP 1 Score: 271.166 bits (692), Expect = 8.823e-72
Identity = 128/205 (62.44%), Postives = 156/205 (76.10%), Query Frame = 3
Query:  246 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGKLHNHYYPVTP 860
            GTTTLAF F+ GV+VAADSRA+ G YI+SQ+VKK+IEINPY+LGTMAGGAADC FW R L  +CR++EL NK RISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ G  FSVGSGS YAYGV+D GY +D+ +          IY AT+RDA SGG  ++Y+V  +GW ++S D+V  LH  Y   TP
Sbjct:   59 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSGSTP 263          
BLAST of DY258513 vs. ExPASy Swiss-Prot
Match: PSB5_MOUSE (Proteasome subunit beta type-5 OS=Mus musculus GN=Psmb5 PE=1 SV=3)

HSP 1 Score: 270.396 bits (690), Expect = 1.505e-71
Identity = 128/204 (62.75%), Postives = 157/204 (76.96%), Query Frame = 3
Query:  246 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGKLHNHYYPVT 857
            GTTTLAF F  GV+VAADSRA+ G YI+SQ+VKK+IEINPY+LGTMAGGAADC FW R L  +CR++EL NK RISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ GT FSVGSGS YAYGV+D GY +D+ +          IY AT+RDA SGG  ++Y+V  +GW ++S D+V  LH+ Y  V+
Sbjct:   59 GTTTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHDKYSSVS 262          
BLAST of DY258513 vs. ExPASy Swiss-Prot
Match: PSB5_BOVIN (Proteasome subunit beta type-5 OS=Bos taurus GN=PSMB5 PE=1 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 2.567e-71
Identity = 127/200 (63.50%), Postives = 155/200 (77.50%), Query Frame = 3
Query:  246 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGKLHNHY 845
            GTTTLAF F+ GV+VAADSRA+ G YI+SQ+VKK+IEINPY+LGTMAGGAADC FW R L  +CR++EL NK RISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ G  FSVGSGS YAYGV+D GY +D+ +          IY AT+RDA SGG  S+Y+V  +GW ++S D+V  LH+ Y
Sbjct:   59 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEEAYDLARRAIYQATYRDAYSGGSVSLYHVREDGWIRVSSDNVADLHDKY 258          
BLAST of DY258513 vs. ExPASy Swiss-Prot
Match: PSB5_RAT (Proteasome subunit beta type-5 OS=Rattus norvegicus GN=Psmb5 PE=1 SV=3)

HSP 1 Score: 268.855 bits (686), Expect = 4.379e-71
Identity = 127/205 (61.95%), Postives = 157/205 (76.59%), Query Frame = 3
Query:  246 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGKLHNHYYPVTP 860
            GTTTLAF F+ GV+VAADSRA+ G YI+SQ+VKK+IEINPY+LGTMAGGAADC FW R L  +CR++EL NK RISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ GT FSVGSGS YA+GV+D GY +D+ +          IY AT+RDA SGG  ++Y+V  +GW ++S D+V  LH+ Y    P
Sbjct:   59 GTTTLAFKFQHGVIVAADSRATAGPYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYAFGVMDRGYSYDLQVEEAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHDKYTSSIP 263          
BLAST of DY258513 vs. ExPASy Swiss-Prot
Match: PSB5_DICDI (Proteasome subunit beta type-5 OS=Dictyostelium discoideum GN=psmB5 PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 7.469e-71
Identity = 126/210 (60.00%), Postives = 160/210 (76.19%), Query Frame = 3
Query:  231 LKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGKLHNHYYPVTP 860
            L+ A GTTTLAF++  G++V+ DS+++ G Y++S+SVKK+IEI P +LGTMAGGAADC FW R LG +CRL+EL NK  ISV  ASK+LANI+YSY+G GLS+GTMI GWD+TGP LYYVD++G RL G RFS GSGS YAYGVLD+G+K+DM+           +YHAT RDA SGG  +VY+V  +GWKK+S DD  KL+  YY + P
Sbjct:   57 LEFAHGTTTLAFVYGGGIIVSVDSKSTQGPYVASRSVKKVIEITPTLLGTMAGGAADCSFWERELGRRCRLYELRNKELISVAAASKILANIVYSYKGYGLSMGTMITGWDKTGPQLYYVDNDGTRLHGQRFSCGSGSTYAYGVLDTGFKWDMNDEEAYELGRRAVYHATHRDAYSGGAINVYHVQKDGWKKISSDDCFKLYQKYYNIVP 266          
BLAST of DY258513 vs. ExPASy Swiss-Prot
Match: PSB5_CHICK (Proteasome subunit beta type-5 (Fragment) OS=Gallus gallus GN=PSMB5 PE=2 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 3.248e-66
Identity = 123/200 (61.50%), Postives = 149/200 (74.50%), Query Frame = 3
Query:  246 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGKLHNHY 845
            GTTTLAF F  GV+VA DSRA+ G YI+SQ+V+K+IEINP +LGTMAGGAADC FW R L  +CR++EL NK  ISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ G  F+VGSGS YAYGVLD G + DM+           I+ A  RDA SGG  +VY+VGP GW+++S  DV  LH+ Y
Sbjct:   55 GTTTLAFKFAHGVVVAVDSRATAGSYIASQTVQKVIEINPSLLGTMAGGAADCSFWERLLARQCRVYELRNKEPISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGTRIPGEAFAVGSGSSYAYGVLDGGRRPDMATDEALELARRAIFQAARRDAYSGGSVTVYHVGPRGWRRVSSHDVAGLHDGY 254          
The following BLAST results are available for this feature:
BLAST of DY258513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
PSB5B_ARATH1.698e-11579.25Proteasome subunit beta type-5-B OS=Arabidopsis th... [more]
PSB5A_ARATH3.783e-11578.11Proteasome subunit beta type-5-A OS=Arabidopsis th... [more]
PSB5_SPIOL4.625e-11377.19Proteasome subunit beta type-5 OS=Spinacia olerace... [more]
PSB5_PONAB8.823e-7262.44Proteasome subunit beta type-5 OS=Pongo abelii GN=... [more]
PSB5_HUMAN8.823e-7262.44Proteasome subunit beta type-5 OS=Homo sapiens GN=... [more]
PSB5_MOUSE1.505e-7162.75Proteasome subunit beta type-5 OS=Mus musculus GN=... [more]
PSB5_BOVIN2.567e-7163.50Proteasome subunit beta type-5 OS=Bos taurus GN=PS... [more]
PSB5_RAT4.379e-7161.95Proteasome subunit beta type-5 OS=Rattus norvegicu... [more]
PSB5_DICDI7.469e-7160.00Proteasome subunit beta type-5 OS=Dictyostelium di... [more]
PSB5_CHICK3.248e-6661.50Proteasome subunit beta type-5 (Fragment) OS=Gallu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AF08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258513 ID=DY258513; Name=DY258513; organism=Citrus clementina; type=EST; length=1205bp
ATTCTCACTGCAGCTTTTATGCTCGATTTCTGCTCGCAACTCTTAGCTAC
ATTGTCGTTTAATCTTAAATTCAGTGCGTAGACATGAAGCTCGACACTAG
CGGTCTTGAGTCCACTTCTCCATTTTTCGGGTCAGGTGACGAGCTCTGTC
CTGAGTTATTAGCTGCACCATCATTTGCTCTACCTCTTTCTACTGATTTT
GATGAATTTCAAAAGGACACTAAAGCTACACTGAAGCATGCCAAGGGGAC
AACCACACTTGCTTTTATCTTTAAAGAGGGTGTTATGGTGGCTGCTGATT
CTCGAGCTAGCATGGGAGGCTATATCTCATCACAGTCTGTGAAGAAAATT
ATAGAAATCAATCCTTACATGCTTGGCACAATGGCTGGAGGAGCAGCCGA
TTGCCAGTTTTGGCACAGAAATCTGGGCATTAAGTGCCGACTACATGAAT
TGGCCAACAAGCGTAGAATTTCAGTTACAGGGGCATCAAAGCTGCTGGCC
AACATTCTCTACTCTTATCGTGGAATGGGGTTGTCTGTTGGGACTATGAT
TGCTGGATGGGATGAGACTGGTCCTGGGCTGTATTATGTGGACAGTGAAG
GAGGGAGGCTCAAAGGAACACGGTTCTCTGTGGGATCAGGTTCACCATAT
GCTTATGGTGTATTGGACAGCGGGTACAAGTTTGACATGTCTATTGAAGA
AGCTGCGGAGTTGGCTAGAAGAGCTATTTATCATGCAACATTCAGAGATG
CAGCCAGTGGTGGTGTTGCAAGCGTTTATTATGTGGGACCAAATGGATGG
AAGAAGCTGTCTGGGGATGATGTTGGAAAGCTTCACAACCATTATTATCC
AGTCACGCCCCATACGGGGGAACCAAGAAATGGCTGAAGTCGCAAGGGCT
TAATTGAATCTGCTCAATTTTGAACAAGTTTTGAAAAATTCCTCTAAATC
CAAAATCCAGTGGAGGAATTTTACGAATTTGCTTTTGAAACTTTGTCAAA
GTACCCTGGGGTGGAATCCCGGGGAATGAATTGGGAAATTCAACCCAAAT
TAAAATTGAAGGTTTTAAAAAACCCCGGCATTTTTTCTTTTGGGATTTTT
TATTTATAAAAAAAAAACGGGTTTCTATTATAAACTTTTTTTTTTTTAAT
AATAATTTTTTTTTTGTGAGAAAAGTGGAAAAATATACAAAAAACCTTCT
CCCCC
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