DY258523

Overview
NameDY258523
Unique NameDY258523
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1205
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig113 contig Ccv1_Contig113:217..1421. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258523 vs. ExPASy Swiss-Prot
Match: NCKP1_ARATH (Protein NAP1 OS=Arabidopsis thaliana GN=NAP1 PE=1 SV=2)

HSP 1 Score: 422.55 bits (1085), Expect = 2.370e-117
Identity = 223/340 (65.59%), Postives = 261/340 (76.76%), Query Frame = 2
Query:    2 LRSNREVLEAIAGSMHSGDRIEREACLKQIVDLDTLIGFCIEAGQALAFDNXXXXXXXXXXXXXXPLIHSLLAGVVKHIPQGIPEKKEIRRMKGVANSVGVVVDHDSEWVRSILEEVGGANDDSWSLLPYLFAIFITSNIWNTTGFNVETGGFNNNIHCLARCISAVIAGREYVKLQREHQQR-QSFSNS-HDSETLDSEIQSRVSAEASIKSAMQVFVKFAAGVVLDSWNEATRSHLVAKLIFLDQLSEISSFLPRTSLEPYVPYAILRSIYSQYYSNPRQSHLHY*VHRPPIHLPYH*PCISRIETAPW---RSTPQ---------NSAYESGYFRGS 979
            LRSNRE++EA A SMHSGDR+ER+A ++QIVDLDT+IGFCIEAGQALAFD+               LIHS+++G+V+HIP+ IPEKKEIRR+KGVAN VGV  DHDSEWVR ILEEVGGAND+SWSLLPY FA F+TSN WNTTGFN+ETGGF+NNIHCLARCISAVIAG EYV+LQRE+QQ+ QS SN  H SE LDSE   RV+AEASIKS+M +FVKFAA +VLDSW+EA RSHLVAKLIFLDQL EIS +LPR+SLE +VPY ILRSIY+QYYSN   + L           PYH P +S I  +P     +TPQ          +A +SGYF+GS
Sbjct: 1017 LRSNRELIEAAAASMHSGDRVERDASVRQIVDLDTVIGFCIEAGQALAFDDLLAEASGAVLEDNASLIHSMISGIVEHIPEEIPEKKEIRRIKGVANGVGVAGDHDSEWVRLILEEVGGANDNSWSLLPYFFASFMTSNAWNTTGFNIETGGFSNNIHCLARCISAVIAGSEYVRLQREYQQQHQSLSNGHHSSENLDSEFPPRVTAEASIKSSMLLFVKFAASIVLDSWSEANRSHLVAKLIFLDQLCEISPYLPRSSLESHVPYTILRSIYTQYYSNTPSTPL-------STASPYHSPSVSLIHASPSMKNSTTPQRGSGSGSSSTAAPDSGYFKGS 1349          
BLAST of DY258523 vs. ExPASy Swiss-Prot
Match: NCKP1_ORYSJ (Probable protein NAP1 OS=Oryza sativa subsp. japonica GN=NAP1 PE=2 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 1.108e-90
Identity = 173/337 (51.34%), Postives = 232/337 (68.84%), Query Frame = 2
Query:    2 LRSNREVLEAIAGSMHSGDRIEREACLKQIVDLDTLIGFCIEAGQALAFDNXXXXXXXXXXXXXXPLIHSLLAGVVKHIPQGIPEKKEIRRMKGVANSVGVVVDHDSEWVRSILEEVGGANDDSWSLLPYLFAIFITSNIWNTTGFNVETGGFNNNIHCLARCISAVIAGREYVKLQREHQQRQSFSNSHDSETLDSEIQSRVSAEASIKSAMQVFVKFAAGVVLDSWNEATRSHLVAKLIFLDQLSEISSFLPRTSLEPYVPYAILRSIYSQYYS-----------NPRQSHLHY*VHRPPIHLPYH*PCISRIETAPWRSTPQNSAYESGYFRGS 979
            LRSNR+ LE +AGS++SGDRIER+A LKQI+D++TL  FCI+AGQA+ F                PLI+SLL G+   +P+ +P+K EI R++ VA+SVGV   HD+EWV SIL E+G AND+SW+LLPYL A F+ SN+W+TT ++V TGGF+NN+HCLARC+SAV+ G EY +++REH +R S SN H  E  + E+ SRVSAEA+IKSAMQ++VK +AG+VLDSWN+ +R ++V KLIFLDQL E+S +LPR++LE ++PY ILRSIY Q Y            +PRQS L    H  P          +R +T     TP++  +E GY   S
Sbjct:  967 LRSNRDALEGLAGSVNSGDRIERDANLKQIIDIETLADFCIQAGQAITFRRLLVEAVGAVLEEKVPLIYSLLKGLAMQLPEEVPDKNEIIRLRRVASSVGVGDKHDAEWVHSILAEIGSANDNSWTLLPYLCAAFMASNMWSTTAYDVNTGGFSNNLHCLARCVSAVVGGSEYTRMEREH-RRSSLSNGHMDELQEPELLSRVSAEANIKSAMQLYVKLSAGLVLDSWNDTSRPYIVPKLIFLDQLCEMSPYLPRSTLEVHIPYTILRSIYHQLYGASLMATEPMEPSPRQSPLISLAHASPSMKQ------NRADT-----TPRSHTFEPGYHSSS 1291          
The following BLAST results are available for this feature:
BLAST of DY258523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NCKP1_ARATH2.370e-11765.59Protein NAP1 OS=Arabidopsis thaliana GN=NAP1 PE=1 ... [more]
NCKP1_ORYSJ1.108e-9051.34Probable protein NAP1 OS=Oryza sativa subsp. japon... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2AH05FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258523 ID=DY258523; Name=DY258523; organism=Citrus clementina; type=EST; length=1205bp
ATTACGGTCAAACCGTGAGGTATTAGAGGCAATTGCTGGCAGCATGCATT
CAGGTGACAGAATAGAAAGAGAGGCATGTTTGAAGCAGATTGTGGATTTG
GACACGTTAATTGGATTCTGTATTGAAGCAGGGCAGGCATTGGCTTTTGA
TAACCTTCTTGCTGAAGCAGCTGGAGCCATTCTTGAAGAAGGTGCCCCGT
TAATACACTCGTTACTAGCCGGGGTAGTTAAGCACATACCTCAAGGAATA
CCTGAAAAGAAGGAAATCAGGAGGATGAAAGGGGTGGCTAACAGTGTTGG
TGTGGTTGTCGATCATGATTCTGAGTGGGTAAGATCAATTTTGGAAGAGG
TTGGAGGTGCAAATGATGATTCATGGAGCTTGTTGCCTTACCTATTTGCA
ATCTTCATAACGTCCAACATTTGGAACACTACTGGCTTCAATGTTGAGAC
TGGGGGCTTCAACAACAATATCCATTGCTTGGCAAGATGCATTAGTGCTG
TAATTGCAGGACGTGAATATGTTAAATTGCAACGTGAACATCAACAGAGG
CAGTCTTTTTCAAATAGCCATGACAGTGAGACTTTGGATTCTGAAATACA
AAGCCGTGTTTCTGCAGAAGCCAGCATTAAATCTGCAATGCAGGTCTTTG
TCAAATTTGCTGCCGGAGTAGTTCTAGATTCGTGGAATGAAGCTACAAGA
TCTCACCTTGTCGCCAAGCTTATATTTCTGGACCAACTCTCTGAGATATC
ATCATTCCTTCCAAGAACTTCTCTTGAACCCTATGTTCCCTATGCCATTC
TCCGTTCAATATACAGTCAATACTATTCAAATCCCCGTCAATCCCACTTG
CATTATTAAGTGCATCGCCCCCCCATTCACCTGCCATATCATTAACCATG
CATCTCCCGAATCGAGACAGCCCCGTGGAGATCCACTCCTCAGAATAGTG
CCTACGAATCGGGTTACTTTAGAGGATCTCTTCCCTTAATCAGGAACCGT
CTATGAAACTTGAAATGGAAATCTGAAAAAGTGACAATAACCTAGGAAAG
GTTCCCCGTCCCGGGGCCCCGGGAATTACATTCCAGCCCGGAAAAATTTA
AATACCCCCAAAAAGGTCCAACCCTCGGGGAAAAAGGGGTGCCCCCCCCC
CCCTCCCCCCCAGTTTTTTGCGGGGGGGCAGGGGCTCTGGGCCCCACATT
TTAAC
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