DY258533

Overview
NameDY258533
Unique NameDY258533
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length954
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1158 contig Ccv1_Contig1158:1..956. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY258533 vs. ExPASy Swiss-Prot
Match: SQD1_SPIOL (UDP-sulfoquinovose synthase, chloroplastic OS=Spinacia oleracea GN=SQD1 PE=1 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 3.585e-83
Identity = 149/181 (82.32%), Postives = 162/181 (89.50%), Query Frame = 1 
Query:    1 GVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHIXXXXXXXXXXNFAIQFKDRVDSKQIMPSVSWRKIGTKPKTVAA 543
            GV T+ETAMHEELCNR DYD VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA+ GEFRVFNQFTEQ+SV  LAALVTKAGEKLGL+V+TISVPNPRVEAEEHYYNAKHTKL ELGL+PH+          NFA+Q+KDRVD+KQIMPSVSW+KIG KP+T+ A
Sbjct:  302 GVMTEETAMHEELCNRFDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAKLGEFRVFNQFTEQYSVRDLAALVTKAGEKLGLNVETISVPNPRVEAEEHYYNAKHTKLAELGLKPHLLSDSLLDSVLNFAVQYKDRVDTKQIMPSVSWKKIGVKPQTLRA 482
[Close]
BLAST of DY258533 vs. ExPASy Swiss-Prot
Match: SQD1_ARATH (UDP-sulfoquinovose synthase, chloroplastic OS=Arabidopsis thaliana GN=SQD1 PE=1 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 1.506e-81
Identity = 146/179 (81.56%), Postives = 160/179 (89.39%), Query Frame = 1 
Query:    1 GVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHIXXXXXXXXXXNFAIQFKDRVDSKQIMPSVSWRKIGTKPKTV 537
            GV+TDET MHEEL NRLDYD VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVE+AIANPA+ GEFRVFNQFTEQFSVN+LA+LVTKAG KLGLDVK ++VPNPRVEAEEHYYNAKHTKL+ELGL+PH           NFA+QFKDRVD+KQIMPSVSW+KIG K K++
Sbjct:  297 GVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLNFAVQFKDRVDTKQIMPSVSWKKIGVKTKSM 475
The following BLAST results are available for this feature:
BLAST of DY258533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SQD1_SPIOL3.585e-8382.32UDP-sulfoquinovose synthase, chloroplastic OS=Spin... [more]
SQD1_ARATH1.506e-8181.56UDP-sulfoquinovose synthase, chloroplastic OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2BA11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258533 ID=DY258533; Name=DY258533; organism=Citrus clementina; type=EST; length=954bp
GGAGTGAGAACAGATGAGACTGCCATGCATGAAGAACTCTGTAACAGGTT
AGATTATGATGGGGTGTTTGGGACTGCATTGAATCGGTTTTGTGTTCAAG
CTGCTGTCGGTCATCCGCTTACAGTGTATGGAAAAGGAGGCCAGACTAGA
GGTTACCTTGACATAAGAGATACAGTTCAGTGTGTTGAACTTGCAATTGC
AAACCCAGCACAGCCCGGTGAATTTCGGGTCTTTAATCAATTCACGGAGC
AGTTTTCTGTCAATCAACTTGCTGCCCTAGTTACAAAAGCAGGAGAGAAG
CTTGGGCTTGACGTAAAAACCATATCTGTTCCCAACCCACGAGTAGAAGC
AGAGGAGCATTATTACAATGCAAAGCACACAAAACTCATTGAGCTGGGAC
TCCAACCACACATTCTTTCGGACTCACTTCTTGACTCGTTGCTCAACTTT
GCCATTCAGTTCAAGGATCGTGTTGACTCAAAACAGATTATGCCCAGTGT
TTCTTGGAGAAAAATTGGAACCAAGCCAAAGACTGTTGCGGCCTAATCAA
ATAAACATGGTTGAGAGATTTTGGAATGATAATGAGTGTTTTAATCTCAT
CGTCGTCTCTATTGAGTTCTTCTCTTGCTAGGCACCAGAGCACTTTTCAG
AACTACACCCATAGAGAGGAGTTGTAATCTAGGGGTTTATGGGCATATGC
AATTCCCTGCCCCTATAGCATCTGTCTTATGGTCAAGGTCGAATAGCTGT
ATCAAATCCCAGTCTCCGAACTTGTAAGATTTTGAGATTTATGGAGGTGC
CGTCTGTTTTGTTTATTTTATCATATGGAGTGATTAACTTTGGATAATGG
ATGCAAGCATGGAGACGGATTTCAAATTGGATTGAATTACAACGGATTTT
GGGATTGATCCCTATCCAACCCGCAATGAAAATATAAAATGAAAAAACAT
GGGT
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