DY258538

Overview
NameDY258538
Unique NameDY258538
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1104
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258538_ssr22 microsatellite DY258538_ssr22:22..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY258538 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.828e-70
Identity = 118/223 (52.91%), Postives = 154/223 (69.06%), Query Frame = 1
Query:  169 AILINGEVSDGQCDDQPTLDP--------RPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGI 813
            A+++   VS G+C     L+         R HS S+ +FG VGDG+TLNT AFQ+A+  L  +  +GGAQLYVP+GKWLTGSF+LTSH TLFL + AV+L SQ+ S W V+ PLPSYGRG +    RY SLI G  L DV++TGDNGTIDGQG +WW  F    L Y+RP+L+E + S ++ +SNLT LN+P++N+HPVY  N+ IQ I++ AP  SP T GI
Sbjct:   30 AVVLLLSVSRGECRKGRILEALEYSAISCRAHSASLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHFTLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGITILAPVRSPNTDGI 252          

HSP 2 Score: 45.8246 bits (107), Expect = 3.828e-70
Identity = 22/57 (38.60%), Postives = 34/57 (59.65%), Query Frame = 3
Query:  840 IEDCIIAMGNDAISLRSGWDQNGIA*GKPTTNVPSKPVLLQSSSRSSVALW*QKFGG 1010
            IEDC I  G+D ++++SGWD+ GIA G PT  +  + +   S   + +AL  +  GG
Sbjct:  262 IEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEMSGG 318          
BLAST of DY258538 vs. ExPASy Swiss-Prot
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 3.034e-15
Identity = 67/203 (33.00%), Postives = 92/203 (45.32%), Query Frame = 1
Query:  235 PHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGK-WLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDV----VVTGDNGTIDGQGSVWWDWFSSQSLNYSRP-----HLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGI 813
            P +VS+++FGA GDGKT +T AF NA  + K+ +  G   L VP G  +L  S  LT      L     I G+ + S                     YK +    M   V    V  GD G +DG G  WW   +S   N ++P       + F +S++++V NL   NA    I    CSNV + N+ V AP +SP T GI
Sbjct:   65 PTTVSVSDFGAKGDGKTDDTQAFVNA--WKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCNSILT--VQIFGTLSASQ----------------KRSDYKDISKWIMFDGVNNLSVDGGDTGVVDGNGETWWQ--NSCKRNKAKPCTKAPTALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGI 245          
BLAST of DY258538 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.038e-14
Identity = 58/192 (30.21%), Postives = 93/192 (48.44%), Query Frame = 1
Query:  238 HSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGI 813
            +++ +T+FGAVGDG T ++ AF  A  +    +  G  Q  VP+G        +T  L     +G+       P    ++  L +  +G     +    L     +  +V+ GD G I+GQGS WW+   S      RP  ++F S  N+ +S LT L++P  +IH   C+ V I ++ ++AP  SP T GI
Sbjct:   22 NALDVTQFGAVGDGVTDDSQAFLKA--WEAVCSGTGDGQFVVPAG--------MTFMLQPLKFQGSC---KSTPVFVQMLGKLVAPSKGNWKGDKDQWILFTD--IEGLVIEGD-GEINGQGSSWWEHKGS------RPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGI 191          

HSP 2 Score: 29.6462 bits (65), Expect = 9.038e-14
Identity = 12/20 (60.00%), Postives = 16/20 (80.00%), Query Frame = 3
Query:  834 VCIEDCIIAMGNDAISLRSG 893
            V I+DCIIA G+D I++ SG
Sbjct:  199 VVIQDCIIATGDDCIAINSG 218          
BLAST of DY258538 vs. ExPASy Swiss-Prot
Match: PGLR4_ARATH (Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.733e-11
Identity = 62/224 (27.68%), Postives = 89/224 (39.73%), Query Frame = 1
Query:  208 DDQPTLDPRPHS------VSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHL-------TLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDW---------FSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGI 813
            D  P+ DP P          +T FGAVGDG   +T AFQ+A  +  + A + G  L  P G    G F +TS +        L  +   V++    P  W               P +  K+    +   D       GT++G G  WWD           SS S   + P ++ F  S N+ V  L   N+P +++    C  V I  I + +P  SP T GI
Sbjct:   62 DPYPSPDPAPGDSDSGCVFDVTSFGAVGDGSCDDTAAFQDA--WKAACAVESGVVL-APEG----GVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPEEW---------------PEKDNKNQWLVFYRLDGFTFSGKGTVEGNGQKWWDLPCKPHRGPDGSSSSGPCASPTMIRFFMSNNIEVKGLRIQNSPQFHMKFDGCQGVLINEIQISSPKLSPNTDGI 263          
The following BLAST results are available for this feature:
BLAST of DY258538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PGLR_VITVI3.828e-7052.91Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]
ADPG2_ARATH3.034e-1533.00Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN... [more]
PGLR3_ARATH9.038e-1430.21Probable polygalacturonase At3g15720 OS=Arabidopsi... [more]
PGLR4_ARATH7.733e-1127.68Polygalacturonase At1g48100 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2BB09FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258538 ID=DY258538; Name=DY258538; organism=Citrus clementina; type=EST; length=1104bp
CTTACCAGCCACCTCACCCTCTTCTTTCTTTCTTTCTTTTTCTCTTTTGC
AGTTTGGTGTTTTTGGCTTCTCACTGTTCTCTTCTTGTCTCTTTCGTCCA
CTGTTTGCTGAAGCTTGCGACTCATGAAGATGCCAGTGGCATTGCTTCTG
CTGCTGGCATTGTGCAGTGCTATCTTAATCAATGGAGAAGTAAGTGATGG
ACAATGTGATGATCAACCTACATTAGACCCAAGACCGCATAGTGTGTCAA
TTACTGAGTTTGGTGCTGTTGGTGATGGGAAAACGTTGAACACACTTGCC
TTTCAGAATGCCATTTTTTATCTCAAGTCCTTTGCCGACAAAGGAGGGGC
ACAGCTGTATGTTCCTTCGGGAAAGTGGCTCACTGGAAGTTTCAATCTTA
CCAGCCACCTCACCCTCTTCTTGGAAAAGGGTGCTGTCATTCTTGGATCT
CAGAATCCATCTCACTGGGACGTTGTGGATCCCTTACCCTCATATGGTCG
AGGGATTGAACTTCCTGGAAGAAGATATAAAAGTTTGATAAATGGGTATA
TGCTACGCGATGTGGTAGTAACAGGTGACAATGGAACGATTGATGGTCAG
GGCTCTGTTTGGTGGGATTGGTTCAGTTCTCAGTCCTTAAATTACAGCCG
TCCTCATCTGGTCGAATTTATATCATCAGAAAATGTAGTGGTCTCCAATC
TTACATTCTTGAACGCCCCAGCATATAACATACATCCAGTCTACTGCAGC
AATGTACACATTCAAAATATATCAGTCCACGCTCCACCAGAATCGCCATA
TACTGTTGGCATAATTTCAGATTCTTCAAATATGTCTGCATCGAGGACTG
CATCATCGCCATGGGGAATGATGCTATTTCTCTAAGAAGTGGTTGGGACC
AAAACGGCATTGCTTAGGGAAAACCAACCACAAATGTACCATCAAAACCG
GTCCTTCTTCAATCATCTTCCCGTTCTTCAGTTGCCCTTTGGTAACAAAA
ATTCGGGGGGCAAAATTTAATGGGGCAAGGAAAAAAAAATTATTCTTAAC
AAACCATATAAAGTGTAATTTGAATTAAAAAAAATAAAGGGGCAAAAAGG
TGGT
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