DY258538
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY258538 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 3.828e-70 Identity = 118/223 (52.91%), Postives = 154/223 (69.06%), Query Frame = 1 Query: 169 AILINGEVSDGQCDDQPTLDP--------RPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGI 813 A+++ VS G+C L+ R HS S+ +FG VGDG+TLNT AFQ+A+ L + +GGAQLYVP+GKWLTGSF+LTSH TLFL + AV+L SQ+ S W V+ PLPSYGRG + RY SLI G L DV++TGDNGTIDGQG +WW F L Y+RP+L+E + S ++ +SNLT LN+P++N+HPVY N+ IQ I++ AP SP T GI Sbjct: 30 AVVLLLSVSRGECRKGRILEALEYSAISCRAHSASLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHFTLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGITILAPVRSPNTDGI 252 HSP 2 Score: 45.8246 bits (107), Expect = 3.828e-70 Identity = 22/57 (38.60%), Postives = 34/57 (59.65%), Query Frame = 3 Query: 840 IEDCIIAMGNDAISLRSGWDQNGIA*GKPTTNVPSKPVLLQSSSRSSVALW*QKFGG 1010 IEDC I G+D ++++SGWD+ GIA G PT + + + S + +AL + GG Sbjct: 262 IEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEMSGG 318
BLAST of DY258538 vs. ExPASy Swiss-Prot
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 3.034e-15 Identity = 67/203 (33.00%), Postives = 92/203 (45.32%), Query Frame = 1 Query: 235 PHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGK-WLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDV----VVTGDNGTIDGQGSVWWDWFSSQSLNYSRP-----HLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGI 813 P +VS+++FGA GDGKT +T AF NA + K+ + G L VP G +L S LT L I G+ + S YK + M V V GD G +DG G WW +S N ++P + F +S++++V NL NA I CSNV + N+ V AP +SP T GI Sbjct: 65 PTTVSVSDFGAKGDGKTDDTQAFVNA--WKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCNSILT--VQIFGTLSASQ----------------KRSDYKDISKWIMFDGVNNLSVDGGDTGVVDGNGETWWQ--NSCKRNKAKPCTKAPTALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGI 245
BLAST of DY258538 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 9.038e-14 Identity = 58/192 (30.21%), Postives = 93/192 (48.44%), Query Frame = 1 Query: 238 HSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGI 813 +++ +T+FGAVGDG T ++ AF A + + G Q VP+G +T L +G+ P ++ L + +G + L + +V+ GD G I+GQGS WW+ S RP ++F S N+ +S LT L++P +IH C+ V I ++ ++AP SP T GI Sbjct: 22 NALDVTQFGAVGDGVTDDSQAFLKA--WEAVCSGTGDGQFVVPAG--------MTFMLQPLKFQGSC---KSTPVFVQMLGKLVAPSKGNWKGDKDQWILFTD--IEGLVIEGD-GEINGQGSSWWEHKGS------RPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGI 191 HSP 2 Score: 29.6462 bits (65), Expect = 9.038e-14 Identity = 12/20 (60.00%), Postives = 16/20 (80.00%), Query Frame = 3 Query: 834 VCIEDCIIAMGNDAISLRSG 893 V I+DCIIA G+D I++ SG Sbjct: 199 VVIQDCIIATGDDCIAINSG 218
BLAST of DY258538 vs. ExPASy Swiss-Prot
Match: PGLR4_ARATH (Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 7.733e-11 Identity = 62/224 (27.68%), Postives = 89/224 (39.73%), Query Frame = 1 Query: 208 DDQPTLDPRPHS------VSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHL-------TLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDW---------FSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGI 813 D P+ DP P +T FGAVGDG +T AFQ+A + + A + G L P G G F +TS + L + V++ P W P + K+ + D GT++G G WWD SS S + P ++ F S N+ V L N+P +++ C V I I + +P SP T GI Sbjct: 62 DPYPSPDPAPGDSDSGCVFDVTSFGAVGDGSCDDTAAFQDA--WKAACAVESGVVL-APEG----GVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPEEW---------------PEKDNKNQWLVFYRLDGFTFSGKGTVEGNGQKWWDLPCKPHRGPDGSSSSGPCASPTMIRFFMSNNIEVKGLRIQNSPQFHMKFDGCQGVLINEIQISSPKLSPNTDGI 263 The following BLAST results are available for this feature:
BLAST of DY258538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY258538 ID=DY258538; Name=DY258538; organism=Citrus clementina; type=EST; length=1104bpback to top |