DY258622

Overview
NameDY258622
Unique NameDY258622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1295
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_PARUW (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=ispG PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.961e-56
Identity = 112/224 (50.00%), Postives = 152/224 (67.86%), Query Frame = 1 
Query:  286 RQKYCESIHKTVRRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFADRRAQFQHLEYTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGNPFKSYHELQWGISSGNGLNLPFNLQKSGCKLELPYFCLFHESQGTQLEMGQSNP 957
            ++KYCE+IH+T RR T+ V VGNV IG  HPIR+Q+MTT+ T+DV  T+E+V+R+ADQG ++VR+TVQG +EADAC  IK  L+++ Y IPLVADIHF P  A+RV D  DK+R+NPGNF D+RA F+ + Y D+ Y +E+E IEE F+PLVEKC +  +A+RIGTN G+       L   I +  G + PF + +S   LE    C  ++       M  SNP
Sbjct:    3 QKKYCEAIHQTERRPTRIVNVGNVGIGGNHPIRIQSMTTSSTRDVEATIEQVIRLADQGCEIVRVTVQGIKEADACEHIKKGLIKRGYQIPLVADIHFYPPAAMRVVDFVDKVRINPGNFVDKRASFKQIVYDDESYAREIERIEEKFTPLVEKCKRLNRAMRIGTNHGS-------LSDRIMNRYG-DTPFGMVESA--LEFARICRKNDYHNFLFSMKASNP 216
[Close]
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTR (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis GN=ispG PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.904e-43
Identity = 83/163 (50.92%), Postives = 111/163 (68.10%), Query Frame = 1 
Query:  307 IHKTVRRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFADRRAQFQHLEYTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGN 795
            I    RR T  V +G++ +GSEH I++Q+MTT  T DV GTV ++  + + G D+VR+TVQG RE  AC  IK+ L+Q+N +IPLVADIHF P  A+ V DC DK+R+NPGN+ D+R  F    Y+D+ Y   LEH+   FSPLVEKC +  KA+RIG N G+
Sbjct:    6 IQNAFRRKTLPVRIGDLFVGSEHSIKIQSMTTTATTDVDGTVRQICALQEWGCDIVRVTVQGLREVHACEHIKDRLIQQNISIPLVADIHFFPQAAIHVVDCVDKVRINPGNYVDKRNMFTGKIYSDEQYAHSLEHLMNKFSPLVEKCKRLGKAMRIGVNHGS 168
[Close]
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=ispG PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.904e-43
Identity = 83/163 (50.92%), Postives = 111/163 (68.10%), Query Frame = 1 
Query:  307 IHKTVRRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFADRRAQFQHLEYTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGN 795
            I    RR T  V +G++ +GSEH I++Q+MTT  T DV GTV ++  + + G D+VR+TVQG RE  AC  IK+ L+Q+N +IPLVADIHF P  A+ V DC DK+R+NPGN+ D+R  F    Y+D+ Y   LEH+   FSPLVEKC +  KA+RIG N G+
Sbjct:    6 IQNAFRRKTLPVRIGDLFVGSEHSIKIQSMTTTATTDVDGTVRQICALQEWGCDIVRVTVQGLREVHACEHIKDRLIQQNISIPLVADIHFFPQAAIHVVDCVDKVRINPGNYVDKRNMFTGKIYSDEQYAHSLEHLMNKFSPLVEKCKRLGKAMRIGVNHGS 168
[Close]
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=ispG PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.904e-43
Identity = 83/163 (50.92%), Postives = 111/163 (68.10%), Query Frame = 1 
Query:  307 IHKTVRRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFADRRAQFQHLEYTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGN 795
            I    RR T  V +G++ +GSEH I++Q+MTT  T DV GTV ++  + + G D+VR+TVQG RE  AC  IK+ L+Q+N +IPLVADIHF P  A+ V DC DK+R+NPGN+ D+R  F    Y+D+ Y   LEH+   FSPLVEKC +  KA+RIG N G+
Sbjct:    6 IQNAFRRKTLPVRIGDLFVGSEHSIKIQSMTTTATTDVDGTVRQICALQEWGCDIVRVTVQGLREVHACEHIKDRLIQQNISIPLVADIHFFPQAAIHVVDCVDKVRINPGNYVDKRNMFTGKIYSDEQYAHSLEHLMNKFSPLVEKCKRLGKAMRIGVNHGS 168
[Close]
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_CHLT2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=ispG PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.904e-43
Identity = 83/163 (50.92%), Postives = 111/163 (68.10%), Query Frame = 1 
Query:  307 IHKTVRRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFADRRAQFQHLEYTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGN 795
            I    RR T  V +G++ +GSEH I++Q+MTT  T DV GTV ++  + + G D+VR+TVQG RE  AC  IK+ L+Q+N +IPLVADIHF P  A+ V DC DK+R+NPGN+ D+R  F    Y+D+ Y   LEH+   FSPLVEKC +  KA+RIG N G+
Sbjct:    6 IQNAFRRKTLPVRIGDLFVGSEHSIKIQSMTTTATTDVDGTVRQICALQELGCDIVRVTVQGLREVHACEHIKDRLIQQNISIPLVADIHFFPQAAIHVVDCVDKVRINPGNYVDKRNMFTGKIYSDEQYAHSLEHLMNKFSPLVEKCKRLGKAMRIGVNHGS 168
[Close]
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_CHLMU (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia muridarum GN=ispG PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.365e-41
Identity = 81/158 (51.27%), Postives = 111/158 (70.25%), Query Frame = 1 
Query:  322 RRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFADRRAQFQHLEYTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGN 795
            RR T +V VGN+ +GSEH I++Q+MTT  T DV GTV ++  + + G ++VR+TVQG +E  AC +IK+ LVQ+N  IPLVADIHF P  A+ VAD  DK+R+NPGN+ D+R  F    Y+D+ Y + LE + E FSPLV KC +  +A+RIG N G+
Sbjct:   11 RRKTLSVKVGNLFVGSEHSIKIQSMTTTATTDVEGTVRQIYALQECGCEIVRVTVQGLKEVGACEQIKDRLVQQNVTIPLVADIHFFPQAAIHVADFVDKVRINPGNYVDKRNMFSGKIYSDEQYTRSLERLFEKFSPLVAKCKRLGRAMRIGVNHGS 168
[Close]
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_CHLFF (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila felis (strain Fe/C-56) GN=ispG PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 5.733e-40
Identity = 80/161 (49.69%), Postives = 107/161 (66.46%), Query Frame = 1 
Query:  313 KTVRRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFADRRAQFQHLEYTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGN 795
            +T RR T +V +G++ +GSEH I++Q+MTT  T DV  TV ++  + +   D+ R+TVQG +EA AC  IK  L+    +IPLVADIHF P  A+ VAD  DK+R+NPGNF D+R  F    YTD +Y   L  +EE FSPLVEKC +  KA+RIG N G+
Sbjct:    9 QTARRYTHSVKIGSLFVGSEHSIKMQSMTTTPTSDVDATVAQICSLVEAKCDIARVTVQGVKEAQACEHIKERLLTMGLDIPLVADIHFFPQAAMHVADFVDKVRINPGNFVDKRNMFSGKTYTDKNYADSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGS 169
[Close]
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_CHLPN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia pneumoniae GN=ispG PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 9.779e-40
Identity = 81/159 (50.94%), Postives = 110/159 (69.18%), Query Frame = 1 
Query:  322 RRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFADRRAQFQHLE-YTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGN 795
            RR T TV +GN+ IGS+H I+ Q+MTT  T D+  TVE++  +A+   D+VR+TVQG +EA AC +IK  L+    NIPLVADIHF P  A+ VAD  DK+R+NPGN+ D+R  F+  + YT+  Y + L  +EE F+PLVEKC +  KA+RIG N G+
Sbjct:   12 RRKTHTVRIGNLYIGSDHSIKTQSMTTTLTTDIDSTVEQIYALAEHNCDIVRVTVQGIKEAQACEKIKERLIALGLNIPLVADIHFFPQAAMLVADFADKVRINPGNYIDKRNMFKGTKIYTEASYAQSLLRLEEKFAPLVEKCKRLGKAMRIGVNHGS 170
[Close]
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_CHLCV (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila caviae GN=ispG PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 4.853e-39
Identity = 78/161 (48.45%), Postives = 106/161 (65.84%), Query Frame = 1 
Query:  313 KTVRRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFADRRAQFQHLEYTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGN 795
            +  RR+T +V +GN+ +GSEH I++Q+MTT  T DV  TV ++  + +   ++ R+TVQG +EA AC  IK  L+     IPLVADIHF P  A+ VAD  DK+R+NPGNF D+R  F    YTD +Y   L  +EE F+PLVEKC +  KA+RIG N G+
Sbjct:    9 QAARRHTHSVKIGNLYVGSEHSIKMQSMTTTPTADVEATVTQICALVEAKCEIARVTVQGIKEAQACEHIKERLLSMGIAIPLVADIHFFPQAAMHVADFVDKVRINPGNFVDKRNMFTGKTYTDKNYADSLLRLEEKFTPLVEKCKRLGKAMRIGVNHGS 169
[Close]
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_CHLAB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila abortus GN=ispG PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.146e-38
Identity = 77/161 (47.83%), Postives = 104/161 (64.60%), Query Frame = 1 
Query:  313 KTVRRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFADRRAQFQHLEYTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGN 795
            +  RR T +V +GN+ +GS+H I+ Q+MTT  T DV  TV ++  + +   ++ R+TVQG +EA AC  IK  L+    ++PLVADIHF P  A+ VAD  DK+R+NPGNF D+R  F    YTD  Y   L  +EE FSPLVEKC +  KA+RIG N G+
Sbjct:    9 QAARRYTHSVKIGNLYVGSDHSIKTQSMTTTPTADVDATVAQICALVEARCEIARVTVQGIKEAQACEHIKERLIALGIDVPLVADIHFFPQAAMHVADFVDKVRINPGNFVDKRNMFTGKIYTDKHYADSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGS 169
The following BLAST results are available for this feature:
BLAST of DY258622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 421
Match NameE-valueIdentityDescription
ISPG_PARUW1.961e-5650.004-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTR1.904e-4350.924-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTB1.904e-4350.924-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTA1.904e-4350.924-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLT21.904e-4350.924-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLMU1.365e-4151.274-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLFF5.733e-4049.694-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLPN9.779e-4050.944-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLCV4.853e-3948.454-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLAB3.146e-3847.834-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CF11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258622 ID=DY258622; Name=DY258622; organism=Citrus clementina; type=EST; length=1295bp
CACATTTCTCTCTCATAGTTAGTTCTCACTTCTCAACATTATAAAAGGTA
AGCGTATTATTTTGCAAAGATGGCGACTGGAACCCTGCCCGCTTCGTTTC
CGGGCCTAAAGAGCAAAGACTCGGGCTTGGGGTTTGCGAAAAGTGTGGAT
TTTGTGAGAGTTTGTGATTTCAGAAAGTTCAAGTCTGGCAGAATAAGATT
CACTGTGATAAGGAATTCATCAAATTCCAGTTCGGATATCGCTGAGCTTC
AGCCTGCATCAAAAAGAAGCCCCCTATTAATTCCAAGACAAAAGTATTGT
GAATCCATTCACAAAACTGTCAGAAGGAACACACAGACGGTGATGGTGGG
AAATGTAGCCATTGGCAGTGAGCATCCTATTAGAGTTCAAACAATGACTA
CAAATGACACTAAGGATGTTGCTGGAACAGTGGAAGAGGTAATGAGAATA
GCAGACCAGGGAGCAGATCTTGTTCGGATCACAGTTCAAGGGAAGAGAGA
GGCAGATGCATGTTTTGAGATAAAAAACACACTTGTCCAGAAAAACTACA
ATATACCTCTGGTGGCAGATATTCATTTTGCCCCTTCTGTTGCTCTACGA
GTTGCTGACTGCTTTGACAAAATCCGTGTCAACCCAGGAAATTTTGCTGA
TAGACGGGCTCAGTTTCAGCATCTAGAGTACACAGACGATGACTATCAAA
AAGAACTTGAGCATATTGAGGAGGTTTTTAGTCCCTTGGTTGAGAAATGC
TAAAAGTACAGAAAGGCAGTGCGTATTGGGACTAACCCTGGGAACCCTTT
CAAATCCTATCATGAGCTTCAATGGGGAATCTCCTCGGGGAATGGTTTGA
ATCTGCCTTTTAATTTGCAAAAATCTGGCTGTAAATTGGAACTTCCATAT
TTTTGTCTTTTCCATGAAAGCCAAGGCACCCAGCTCGAAATGGGTCAAAG
CAACCCCCTTTGCTGGAGTTTGAAATGGTAGTGCTCCTGGTTGGAAATTA
CCCATTATCATTTGGGAGAATGACTGGAAGCTTGGAAAAAGGGAAAAAAT
AGGCCGGATATAATATCTCTTGTTATTGGGAATTTGGGATCCCTCTCCTC
CTGAAGAGGGGTGTTTGGGGTGATACAAAAATTCAGGGGTTTTCCCCTTT
TTAAGGAACACCCCTCCAAAAAAAAAGGGAGAAAATATTTAACCCTCTTT
GTCGAAAAGGGGGGTGTGTCCCCCCAAACCCTGGTGGGGAATAATAAAAA
GAAAACAGCAGGGCTGCTAGACATTTTTTTTCCTTCCAGACGGAA
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