DY258632

Overview
NameDY258632
Unique NameDY258632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1122
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14357 contig Ccv1_Contig14357:62..1183. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258632 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 281.567 bits (719), Expect = 5.880e-75
Identity = 140/276 (50.72%), Postives = 191/276 (69.20%), Query Frame = 3
Query:   63 MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDT*GVGETPRFGLANALKP 890
            M KGPGL+ DIGKKA+DLL KDY++D+K +ISTYS  GVA+TS+  KKG L  GDV  Q K KN+  D+KVDT SN+ TT T+ E  P  KAI S KVP+  SGK+E+QY H++A  +S++ L  +P ++ ++ IGT ++AFGA+  +DT  G  TK  A ++  K D   S+ L +KGD + ASY H ++ L  +A   +I+ RFST ENTFT+G  +A+D LT VK ++ N GK  AL+QHE  PKSL+TISSEVDT  + ++ + GL+ ALKP
Sbjct:    1 MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGDLLSASYYHAINPLSNTAVGVDISHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKASALIQHEWRPKSLITISSEVDTKAIEKSAKIGLSLALKP 276          
BLAST of DY258632 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 279.641 bits (714), Expect = 2.234e-74
Identity = 143/276 (51.81%), Postives = 181/276 (65.58%), Query Frame = 3
Query:   63 MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDT*GVGETPRFGLANALKP 890
            M KGPGL+ +IGKKA+DLL KDY +D K SI+TYS  GV +TS+  KKG L   DV  Q K KNV  D+KVDT SN+ TT T+ E  P  K I S +VPD  SGKLEVQY HD+A   +++ L  +P ++ +  +GT  IA G +  +DT +G+FTK  AG+S T  D  AS+ L +KGD + ASY H +  L  +A   E+   FSTNEN  TVG  + +D LT VKA++NN GK  ALLQHE  PKSL T+S EVDT  V +  +FGLA ALKP
Sbjct:    1 MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDNLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKASALLQHEWRPKSLFTVSGEVDTKSVDKGAKFGLALALKP 276          
BLAST of DY258632 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 275.018 bits (702), Expect = 5.504e-73
Identity = 136/276 (49.28%), Postives = 187/276 (67.75%), Query Frame = 3
Query:   63 MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDT*GVGETPRFGLANALKP 890
            M KGPGL++DIGKKA+DLL +DY +D K +++TYS  GVA+T++ +KKG L   DV+ Q K KN+  DVKVDT SN+ TT T+ E  P  K I S  VPD  SGK+E+QY H++A   ++I L  SP ++ +   G  ++A G +  +DT +GNFTK  AG+S +  D  AS+ L DKGDT+ ASY H +  +  +A   E+T  FS+NENT T+G  + +D LT VKA++N++GK  AL+QHE  PKSL TIS EVDT  + ++ + GLA ALKP
Sbjct:    1 MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276          
BLAST of DY258632 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 269.24 bits (687), Expect = 3.020e-71
Identity = 136/276 (49.28%), Postives = 191/276 (69.20%), Query Frame = 3
Query:   63 MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDT*GVGETPRFGLANALKP 890
            M KGPGL+ +IGKKA+DLL KD+N+DQK SI+T+S AGVA+TST  KKG L  GDVA Q + KN+  D+KV T+S  L T T+ E  P  ++I S KVPD NSGK+E+QY H++A  ++++ L Q+P ++ +  IG+  +A G +  +DT SGNFTK  AG+S TK D  AS+ + DKGD + ASY H ++ L  +A   E++ + S+ ++T TVG  +++D LT VKA++N+ G   AL+QHE  PKS  TIS EVDT  + ++ + GLA ALKP
Sbjct:    1 MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASALIQHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 276          
BLAST of DY258632 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 264.233 bits (674), Expect = 9.715e-70
Identity = 130/273 (47.62%), Postives = 189/273 (69.23%), Query Frame = 3
Query:   72 GPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDT*GVGETPRFGLANALKP 890
            GPGL+ +IGKKA+DLL +DY  D K +++TY+  GVA+T+T+ KK  L  G++ +Q K KN+  DVK +++SN++TT T+ E+ P  K+I S  VPD  SGK E+QY HD+A  +++I L  SP +++++  GT ++A GA+   DT +GN TKY AG+S +  D  AS+ L +KGD++ ASY +H+ N   +A   E+T  FS+NEN+ T G  + +D LTVVKA+ NN GK  ALLQHE  PKS+ TIS+EVDT  + ++ + G+A ALKP
Sbjct:    3 GPGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASY-YHIVNHSATAVGAELTHSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASALLQHEWRPKSVWTISAEVDTKAIDKSSKVGIAVALKP 274          
BLAST of DY258632 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 261.151 bits (666), Expect = 8.224e-69
Identity = 132/277 (47.65%), Postives = 179/277 (64.62%), Query Frame = 3
Query:   63 MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVG-EITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDT*GVGETPRFGLANALKP 890
            M KGPGL+ +IGKKA+DLL +DY  DQK S++TYS  GVA+T+T   KG L  GDVA Q K  N   DVKV T+S++LTT T  E  P  K I   K+PD+ SGK EVQYFHD+A  ++++    +P ++ +  +GT  ++ G +  Y+T SGNF  + AG + TK D  AS+IL DKG+ + ASY      +  S  VG EI+  F+T EN  TVG  +A+D LT VKA++NN G   AL+QHE  PKS  T+S EVD+  + ++ + G+A ALKP
Sbjct:    1 MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASY---YQIVSPSTVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274          
BLAST of DY258632 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 3.455e-67
Identity = 128/275 (46.55%), Postives = 186/275 (67.64%), Query Frame = 3
Query:   72 GPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEIL-PSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVG-EITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDT*GVGETPRFGLANALKP 890
            GPGL++ IGKKAKDLL +DY  D K +++TY+  G A+T+T+ KK  L+ G++ +Q K KN+  DVK ++ SN++TT T  ++  P  K I S  VPD  SGK+E+QY HD+A   ++I L  +P ++++   GT ++A GA+   DT + NF KY A +S T  D  AS+ L +KGD++ ASY H ++  K   AVG E+T  FS+NEN+ T G  + +D LT+VKA++NN GK  AL+QHE +PKSL TIS+EVDT  + ++ + G+A ALKP
Sbjct:    3 GPGLYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKNITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLTASYYHIVE--KSGTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASALIQHEFMPKSLCTISAEVDTKAIEKSSKVGIAIALKP 275          
BLAST of DY258632 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 5.529e-57
Identity = 111/271 (40.96%), Postives = 170/271 (62.73%), Query Frame = 3
Query:   78 GLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEI-LPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDT*GVGETPRFGLANALK 887
            GL+ DIGKK +DLL KDYN  QK  ++T S  GVA+T+   +K     G++  Q K K +  DVK ++ES++LTT T+ E   P  K+I +L VPD  SGKLE QY H++A   +++ LN +P ++++   G+ +++ G +  +DT + +FTKY A +S+T PD  AS+ L + GDT+ ASY H + N   +A   E++   S NE+T   G  +++D  T +K + NN+G   AL+QHE  PKS +TIS +VDT  + ++ + GL+  LK
Sbjct:    6 GLYTDIGKKTRDLLYKDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKLTVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVASYYHLVKNHSGTAVGAELSHSMSRNESTLIFGSQHSLDPHTTIKTRFNNYGMASALVQHEWRPKSFVTISGDVDTKAIEKSTKVGLSLVLK 276          
BLAST of DY258632 vs. ExPASy Swiss-Prot
Match: VDAC_DROME (Voltage-dependent anion-selective channel OS=Drosophila melanogaster GN=porin PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 9.242e-12
Identity = 59/269 (21.93%), Postives = 119/269 (44.24%), Query Frame = 3
Query:   75 PGLFADIGKKAKDLLTKDYNAD-QKISISTYSGAGVALTST--AVKKGGLSAGDVAAQYKYKN--VLFDVKVDTESNILTTFTLTEILPSTKAIASLKV---------PDYNSGKLEVQYFHDHATFTSAIALN-QSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVD 836
            P  ++D+GK+A+D+ +K YN    K+ + T + +G+   +   + ++ G   G +  +YK K+  +    K +T++ +      TE+    + +  LK+             +GK +V Y H++    S + ++ + P I+ +A +G      G +  +DT     T     +  T  D      + D  +   + +    D L       +++    T+   F +G  Y +D    V+AK+NN  ++G   Q ++     LT+S+ VD
Sbjct:    3 PPSYSDLGKQARDIFSKGYNFGLWKLDLKTKTSSGIEFNTAGHSNQESGKVFGSLETKYKVKDYGLTLTEKWNTDNTL-----FTEVAVQDQLLEGLKLSLEGNFAPQSGNKNGKFKVAYGHENVKADSDVNIDLKGPLINASAVLGYQGWLAGYQTAFDTQQSKLTTNNFALGYTTKDFVLHTAVNDGQEFSGSIFQRTSDKLDVGV---QLSWASGTSNTKFAIGAKYQLDDDASVRAKVNNASQVGLGYQQKLRDGVTLTLSTLVD 263          
The following BLAST results are available for this feature:
BLAST of DY258632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
VDAC_PEA5.880e-7550.72Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_SOLTU2.234e-7451.81Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC2_SOLTU5.504e-7349.28Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC1_ARATH3.020e-7149.28Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC1_ORYSJ9.715e-7047.62Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC2_ARATH8.224e-6947.65Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_WHEAT3.455e-6746.55Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC_MAIZE5.529e-5740.96Outer plastidial membrane protein porin OS=Zea may... [more]
VDAC_DROME9.242e-1221.93Voltage-dependent anion-selective channel OS=Droso... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2CH08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258632 ID=DY258632; Name=DY258632; organism=Citrus clementina; type=EST; length=1122bp
CTCCTCTGGCTCTCCCAAACTTCGCACAGATCCTTCACTTTCGTCTCTCT
CACTAGTCAACCATGAGTAAGGGACCGGGGCTCTTCGCCGACATCGGTAA
AAAAGCCAAAGATCTTTTGACGAAGGACTACAACGCCGATCAGAAAATCA
GTATCTCCACTTACAGCGGTGCCGGAGTGGCTCTCACATCAACTGCTGTG
AAAAAGGGAGGACTCTCTGCTGGTGATGTTGCTGCACAGTACAAGTATAA
GAATGTTTTATTCGATGTCAAAGTGGACACAGAGTCTAATATTTTGACAA
CCTTCACTCTTACTGAGATCCTTCCATCAACAAAGGCTATTGCTTCCTTG
AAAGTGCCTGATTATAACTCTGGCAAGTTGGAGGTTCAGTACTTCCATGA
TCATGCCACCTTTACTTCAGCCATTGCTTTGAATCAATCCCCTTGCATTG
ATGTTACAGCCACCATTGGTACCCCGAGCATTGCTTTTGGTGCTGAGGCT
GGGTATGATACCACATCTGGTAATTTTACAAAGTACACAGCCGGCATTAG
TGTGACCAAACCAGATTCATGTGCTTCAATAATTCTGGGTGACAAGGGAG
ACACAATTAGAGCATCATACGTACATCATCTGGACAACTTGAAGAAGAGT
GCTGCTGTGGGAGAGATCACCAGAAGGTTTTCAACAAATGAGAATACTTT
TACAGTTGGAGGATCATATGCTGTTGATCACCTCACAGTAGTGAAGGCAA
AGCTCAACAACCATGGAAAGCTTGGTGCGCTGCTGCAGCATGAGGTTATT
CCAAAATCATTGCTTACGATTTCTAGTGAGGTTGACACTTAAGGCGTGGG
AGAAACTCCTAGGTTTGGGTTGGCCAATGCCCTCAAGCCCTGATGATCCT
CTTCCAAGCCAATGAATGCTTGTTGGAAATTTTAGAGGTTTTTCAATTTT
AATGGTGATACTTGAAAAATGTCGTCAATAAAGAGGTCCAAGATAAATTT
GGTTCTAGGGTTCTGGTAACTGGTGGAATAATTTGTTTTGAAGGTTAAGG
GGATACCCGGGTCCTCCTATTTCTCTTTTTTTGAACATTTTTTCTTGGGA
AATTTGCGGGGGGCTTTTTGGG
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