DY258633

Overview
NameDY258633
Unique NameDY258633
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1213
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258633_ssr159 microsatellite DY258633_ssr159:159..170. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10130 contig Ccv1_Contig10130:30..1242. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258633 vs. ExPASy Swiss-Prot
Match: SDR2_ARATH (Short-chain dehydrogenase/reductase 2 OS=Arabidopsis thaliana GN=SDR2 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.181e-54
Identity = 73/124 (58.87%), Postives = 90/124 (72.58%), Query Frame = -3
Query:  453 VFSLLGVTDPARVGFLVPFVRSQFGKLDILLTNAGIGGFNMEGDNF-VGIVEGGLPDNWYKMLTQTYELAEKCIQTNYYGNKRMCEALIPLLQLSDSPRIVNASSSMGKLKNITNEWAKGVLSD 821
            VF  L V+DP  V  L  FV++ FGKLDIL+ NAG+GG   + D    G  + G    W + +T+TYELAE+CI+ NYYG KRMCEA IPLLQLSDSPRI+N SS MG++KN+ NEWAKG+LSD
Sbjct:   62 VFHQLDVSDPVSVTSLAEFVKTHFGKLDILINNAGVGGVITDVDALRAGTGKEGF--KWEETITETYELAEECIKINYYGPKRMCEAFIPLLQLSDSPRIINVSSFMGQVKNLVNEWAKGILSD 183          

HSP 2 Score: 89.3521 bits (220), Expect = 6.181e-54
Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = -2
Query:  190 LDEVPKEYLNDFTPETQD--------AAYVISKAATNAYPRILAKKFTKICINSICPGYVKTDLNPNNGVLTVEEGAESLVWLVLLP-KGGPSKCVF 453
            +D+V  + LND   +T          +AYV+SKA  NAY RILAKK  +I +NS+CPG+VKTD+N   G+L+VEEGA S V L LLP +  PS C F
Sbjct:  192 IDQVINQLLNDLKEDTAKTKYWAKVMSAYVVSKAGLNAYTRILAKKHPEIRVNSVCPGFVKTDMNFKTGILSVEEGASSPVRLALLPHQESPSGCFF 288          
BLAST of DY258633 vs. ExPASy Swiss-Prot
Match: SDR1_ARATH ((+)-neomenthol dehydrogenase OS=Arabidopsis thaliana GN=SDR1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.369e-53
Identity = 74/124 (59.68%), Postives = 92/124 (74.19%), Query Frame = -3
Query:  453 VFSLLGVTDPARVGFLVPFVRSQFGKLDILLTNAGIGGFNMEGDNF-VGIVEGGLPDNWYKMLTQTYELAEKCIQTNYYGNKRMCEALIPLLQLSDSPRIVNASSSMGKLKNITNEWAKGVLSD 821
            +F  L V DPA +  L  FV++QFGKLDIL+ NAGIGG   + +    G  + G    W +++T+TYEL E+CI+ NYYG KRMCEA IPLL+LSDSPRIVN SSSMG+LKN+ NEWAKG+LSD
Sbjct:   62 LFHQLDVADPASITSLAEFVKTQFGKLDILVNNAGIGGIITDAEALRAGAGKEGF--KWDEIITETYELTEECIKINYYGPKRMCEAFIPLLKLSDSPRIVNVSSSMGQLKNVLNEWAKGILSD 183          

HSP 2 Score: 85.5001 bits (210), Expect = 1.369e-53
Identity = 48/99 (48.48%), Postives = 63/99 (63.64%), Query Frame = -2
Query:  190 E*LDEVPKEYLNDFTPETQD--------AAYVISKAATNAYPRILAKKFTKICINSICPGYVKTDLNPNNGVLTVEEGAESLVWLVLLP-KGGPSKCVF 459
            E +D+V  + LNDF   T          +AYV+SKA+ N Y R+LAKK  +  +N++CPG+VKTD+N   GVL+VEEGA S V L LLP +  PS C F
Sbjct:  190 ERIDQVINQLLNDFKEGTVKEKNWAKFMSAYVVSKASLNGYTRVLAKKHPEFRVNAVCPGFVKTDMNFKTGVLSVEEGASSPVRLALLPHQETPSGCFF 288          
BLAST of DY258633 vs. ExPASy Swiss-Prot
Match: MNR1_CAPAN ((+)-neomenthol dehydrogenase OS=Capsicum annuum GN=MNR1 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 7.788e-48
Identity = 68/139 (48.92%), Postives = 87/139 (62.59%), Query Frame = -3
Query:  453 VFSLLGVTDPARVGFLVPFVRSQFGKLDILLTNAGIGGFNMEGD---------NFVGIV----EGGLPDNWYKM---LTQTYELAEKCIQTNYYGNKRMCEALIPLLQLSDSPRIVNASSSMGKLKNITNEWAKGVLSD 821
            +F  L + DPA +  LV  ++++FG+LDIL+ NAGI G  +EGD          ++ IV    E G    W K        YEL ++CI+TNYYG KRM EA IPLLQLS+SPRIVN +SSMGKLK + N+WA  VL D
Sbjct:   64 LFHQLDIMDPASISSLVNLIKTKFGRLDILINNAGISGVMVEGDVQVLKEILERYISIVFTEDENGEEGGWTKSGPGSVTNYELTKECIETNYYGAKRMTEAFIPLLQLSNSPRIVNVASSMGKLKLLCNKWAIEVLRD 202          

HSP 2 Score: 91.2781 bits (225), Expect = 7.788e-48
Identity = 49/98 (50.00%), Postives = 62/98 (63.27%), Query Frame = -2
Query:  190 E*LDEVPKEYLNDFTPETQDA--------AYVISKAATNAYPRILAKKFTKICINSICPGYVKTDLNPNNGVLTVEEGAESLVWLVLLPKGGPSKCVF 459
            E +D+V  E+L DFT ++ ++        AY +SKA+  AY R+LA K+    INS+CPGY KTD+N N G LT  EGAESLV L LLP  GPS   F
Sbjct:  209 EKVDQVVNEFLKDFTEKSTESKGWPSYFTAYKVSKASLIAYTRVLATKYPNFRINSVCPGYCKTDVNANTGSLTAGEGAESLVNLALLPNDGPSGLFF 306          
BLAST of DY258633 vs. ExPASy Swiss-Prot
Match: SALR_PAPBR (Salutaridine reductase OS=Papaver bracteatum GN=SALR PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.324e-40
Identity = 62/135 (45.93%), Postives = 88/135 (65.19%), Query Frame = -3
Query:  453 VFSLLGVTDP-ARVGFLVPFVRSQFGKLDILLTNAGIGGFNMEGDNFVGIVEGGLPDNW-----------YKMLTQTYELAEKCIQTNYYGNKRMCEALIPLLQLSDSPRIVNASSSMGKLKNITNEWAKGVLSD 821
            VF  L VTDP   +  L  F++++FGKLDIL+ NAG+ GF+++ D F  ++     D+             +++++TYELAE+C++ NYYG K + E L+PLLQLSDSPRIVN SSS G LK ++NE A  +L D
Sbjct:   65 VFHQLDVTDPITTMSSLADFIKARFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEEVVKIYEKPEAQELMSETYELAEECLKINYYGVKSVTEVLLPLLQLSDSPRIVNVSSSTGSLKYVSNETALEILGD 199          

HSP 2 Score: 71.2478 bits (173), Expect = 2.324e-40
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = -2
Query:  202 AAYVISKAATNAYPRILAKKFTKICINSICPGYVKTDLNPNNGVLTVEEGAESLVWLVLLPKGGPS 399
            AAY  SKA  NAY R+LAKK  K  +N +CPG VKT++N   G  T +EGA+ +V + L P  GPS
Sbjct:  234 AAYTTSKACLNAYTRVLAKKIPKFQVNCVCPGLVKTEMNYGIGNYTADEGAKHVVRIALFPDDGPS 299          
BLAST of DY258633 vs. ExPASy Swiss-Prot
Match: CBR1_BOVIN (Carbonyl reductase [NADPH] 1 OS=Bos taurus GN=CBR1 PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 5.200e-13
Identity = 27/68 (39.71%), Postives = 39/68 (57.35%), Query Frame = -2
Query:  217 DAAYVISKAATNAYPRILAKKFT------KICINSICPGYVKTDLNPNNGVLTVEEGAESLVWLVLLP 402
            D AY ++K       RI A+K +      KI +N+ CPG+V+TD+       + EEGAE+ V+L LLP
Sbjct:  191 DTAYGVTKIGVTVLSRIHARKLSEQRGGDKILLNACCPGWVRTDMGGPKASKSPEEGAETPVYLALLP 258          

HSP 2 Score: 45.8246 bits (107), Expect = 5.200e-13
Identity = 33/117 (28.21%), Postives = 55/117 (47.01%), Query Frame = -3
Query:  477 VFSLLGVTDPARVGFLVPFVRSQFGKLDILLTNAGIGGFNMEGDNFVGIVEGGLPDNWYKMLTQTYELAEKCIQTNYYGNKRMCEALIPLLQLSDSPRIVNASS--SMGKLKNITNE 821
            +F  L + D   +  L  F+R ++G LD+L+ NAGI     +                    T  +  AE  ++TN++G + +C  L+PL++     R+VN SS  S+  LK  + E
Sbjct:   58 LFHQLDIDDRQSIRALRDFLRKEYGGLDVLVNNAGIAFKTAD-------------------TTPFHIQAEVTMKTNFFGTRDVCTELLPLIK--PQGRVVNVSSFVSVNSLKKCSRE 153          
The following BLAST results are available for this feature:
BLAST of DY258633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SDR2_ARATH6.181e-5458.87Short-chain dehydrogenase/reductase 2 OS=Arabidops... [more]
SDR1_ARATH1.369e-5359.68(+)-neomenthol dehydrogenase OS=Arabidopsis thalia... [more]
MNR1_CAPAN7.788e-4848.92(+)-neomenthol dehydrogenase OS=Capsicum annuum GN... [more]
SALR_PAPBR2.324e-4045.93Salutaridine reductase OS=Papaver bracteatum GN=SA... [more]
CBR1_BOVIN5.200e-1339.71Carbonyl reductase [NADPH] 1 OS=Bos taurus GN=CBR1... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2CH10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258633 ID=DY258633; Name=DY258633; organism=Citrus clementina; type=EST; length=1213bp
AATAAGTAAAACAAAAACGTAAAGCTTTATTTATTTGTCGGAGCAACATT
GTCTGTCAAATGTCTCAAAGGAGCATTCATAAACAAACAAGGCTTGGCAT
TTAGTCTTTTATTGGATACATTACGATAAAACAGCAAATCAAAATCATTT
TCATAAATAGAGAGAGAGAGATGTGTCGTTTTCAATCAAAAATACACATT
TTGAAGGACCTCCTTTGGGCAGCAAAACTAACCACACTAAACTTTCAGCA
CCTTCTTCAACGGTTAATACGCCGTTGTTGGGGTTTAAATCTGTTTTGAC
ATAGCCAGGGCAAATACTATTGATGCAAATTTTTGTGAATTTTTTCGCCA
GGATCCTTGGGTAGGCATTAGTTGCTGCTTTTGATATTACGTAAGCGGCG
TCTTGGGTTTCAGGTGTAAAATCATTTAAATACTCCTTCGGCACCTCATC
CAATCACTCAACACTCCTTTGGCCCATTCATTTGTTATATTCTTTAACTT
TCCCATGGAAGAGGAAGCATTAACAATTCTGGGTGAATCTGATAACTGGA
GGAGGGGAATAAGTGCTTCACACATTCTTTTGTTACCATAGTAGTTTGTT
TGAATGCACTTTTCAGCTAACTCATAAGTTTGAGTTAACATTTTATACCA
GTTGTCCGGCAAACCACCCTCAACAATTCCTACAAAATTATCACCTTCCA
TGTTGAATCCACCAATCCCTGCATTGGTTAACAGAATATCAAGCTTCCCA
AACTGACTACGGACAAAAGGAACTAGAAAGCCAACCCTAGCGGGGTCTGT
CACCCCAAGCAAAGAAAAAACCCCTTGGCCCCACCAAAGTTTTTGAATTT
TCAACCAGCGGCAAACCCCCCTTCCCATTCCAAGAAATTAAAGCCCCAGG
GACCCCATGAAAACCAAATGCCCCCAAAATTCAAACCCAATTCCCCGGGT
TGGCCCCTGGAACCACCGGCCGGCCCGGCCAAAAAATTTCCAAATAAAAA
AAAAAAAAAAAAACCCCCTTTCTCTGGAAACAAGTTGGGCATTTTAAAAA
AAACCTTTTGCTTTTTCAATTTTTGGTGCCCACCAAAACAGGGGCCCACT
ACACCCACCAAAAAAAAAAAAAACATATTATTTTGCCCCCCCCCCCCCCC
GCAAAAATCCCCCCCCCCCCAAAAGGGGGGAGGAGCCCCCAAAAATTATA
AAAGGTGGGGGCC
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