DY258697

Overview
NameDY258697
Unique NameDY258697
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1072
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258697_ssr146 microsatellite DY258697_ssr146:146..163. BLAST: Citrus ESTs to Prunus persica proteins V1
DY258697_ssr269 microsatellite DY258697_ssr269:269..280. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY258697 vs. ExPASy Swiss-Prot
Match: IF2B_MALDO (Eukaryotic translation initiation factor 2 subunit beta OS=Malus domestica PE=2 SV=2)

HSP 1 Score: 409.453 bits (1051), Expect = 1.767e-113
Identity = 206/270 (76.30%), Postives = 223/270 (82.59%), Query Frame = 2
Query:   77 MTDENQVDVKDEV-AELAPFDPTXXXXXXXVVIQDPSDDSVDKLAEITETLSVSEGLESTFTGLXXXXXXPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFRARVGRKMVG 883
            M D+NQ +VKDEV A++APFDPT       VVIQD +DDSV KLAE  E  + SEG ESTF GL      P+E+S+LN+E GDA +DL+   GED+E +G       YPWEGSDRDY YEELL RVF ILRENNP+LAGDRRRTVMRPPQVLREGTKK VFVNFMDLCKTMHRQPDHVM FLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGC+SPDTILSKENRLFFLRCEKCGSGRSVAP KAGF ARVGR+  G
Sbjct:    1 MADDNQNEVKDEVVADIAPFDPTKKKKKKEVVIQDTTDDSVGKLAEKAEACTASEGQESTFAGLKKKKKKPIETSILNEESGDAVEDLNERTGEDEEGEGIVLETPSYPWEGSDRDYTYEELLDRVFTILRENNPDLAGDRRRTVMRPPQVLREGTKKAVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCQSPDTILSKENRLFFLRCEKCGSGRSVAPNKAGFMARVGRRNAG 270          
BLAST of DY258697 vs. ExPASy Swiss-Prot
Match: IF2B_WHEAT (Eukaryotic translation initiation factor 2 subunit beta OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 2.092e-106
Identity = 197/271 (72.69%), Postives = 220/271 (81.18%), Query Frame = 2
Query:   77 MTDENQVDVKDEVAELAPFDPTXXXXXXXVVIQDPSDDSVDKLAEITETLSVSEGLESTFTGLXXXXXXPVESSLLNDEIGDAGDDLDGHVGEDDEADGS--GGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFRARVGRKMVG 883
            M DE Q++ K+E  E+APFDPT       VVIQDP+D+ VDKLAE TE LSV+E  E++F GL       VE      E GD  D LD  VGED++ +G   GG  Q YPWEG+DRDY+Y+ELLGRVFNILRENNP+LAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQP+HVM FLLAE+GTSGSLDGQQRLV+KGRFAPKNFE ILRRY+NEYVIC GCKSPDTILSKENRLFFLRCE+CGS RSVAPIKAGF A+VGR+  G
Sbjct:    1 MADEEQMERKEEATEIAPFDPTKKKKKKKVVIQDPADE-VDKLAEKTEGLSVTESGEASFVGLKKKKKKLVELDPSLVEAGDGEDTLDDQVGEDEQGEGIVLGGATQ-YPWEGTDRDYKYDELLGRVFNILRENNPDLAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPEHVMMFLLAEMGTSGSLDGQQRLVIKGRFAPKNFEAILRRYINEYVICHGCKSPDTILSKENRLFFLRCEQCGSSRSVAPIKAGFVAQVGRRKAG 269          
BLAST of DY258697 vs. ExPASy Swiss-Prot
Match: IF2B_ARATH (Eukaryotic translation initiation factor 2 subunit beta OS=Arabidopsis thaliana GN=EMB1401 PE=2 SV=3)

HSP 1 Score: 377.867 bits (969), Expect = 5.697e-104
Identity = 190/267 (71.16%), Postives = 218/267 (81.65%), Query Frame = 2
Query:   77 MTDENQVDVKDEVAELAPFDPTXXXXXXXVVIQDPSDDSVDKL-AEITETLSVSEGLESTFTGLXXXXXXPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFRARVGRK 874
            M DE   ++++E  +LAPFDP+       VVIQ+P +D  +    E +++L V++GLES+FTG+      P ESSLLN+E  DAG+DLD    ++ E +     +QRYPWEGS+RDY Y+ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVM +LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRY+ +YVICLGCKSPDTILSKENRLFFLRCEKCGS RSVAPIK GF ARV R+
Sbjct:    1 MADEIN-EIREEQEQLAPFDPSKKKKKKKVVIQEPVEDLAESSQTEKSDSLPVNDGLESSFTGMKKKKKKPTESSLLNNESVDAGEDLDEIANDEQEGEEGIVLQQRYPWEGSERDYIYDELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMQYLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYITDYVICLGCKSPDTILSKENRLFFLRCEKCGSQRSVAPIKTGFVARVSRR 266          
BLAST of DY258697 vs. ExPASy Swiss-Prot
Match: IF2B_BOVIN (Eukaryotic translation initiation factor 2 subunit 2 OS=Bos taurus GN=EIF2S2 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 5.225e-57
Identity = 110/191 (57.59%), Postives = 139/191 (72.77%), Query Frame = 2
Query:  308 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFRARVGRK 874
            DE+ +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY+ EYV C  C+SPDTIL K+ RL+FL+CE C S  SVA IK GF+A  GR+
Sbjct:  137 DEVLEKDEALEDEDSKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGRR 325          
BLAST of DY258697 vs. ExPASy Swiss-Prot
Match: IF2B_RABIT (Eukaryotic translation initiation factor 2 subunit 2 OS=Oryctolagus cuniculus GN=EIF2S2 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 8.913e-57
Identity = 110/191 (57.59%), Postives = 139/191 (72.77%), Query Frame = 2
Query:  308 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFRARVGRK 874
            DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY+ EYV C  C+SPDTIL K+ RL+FL+CE C S  SVA IK GF+A  G++
Sbjct:  137 DEILEKDEALEDEDSKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGKR 325          
BLAST of DY258697 vs. ExPASy Swiss-Prot
Match: IF2B_HUMAN (Eukaryotic translation initiation factor 2 subunit 2 OS=Homo sapiens GN=EIF2S2 PE=1 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 8.913e-57
Identity = 110/191 (57.59%), Postives = 139/191 (72.77%), Query Frame = 2
Query:  308 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFRARVGRK 874
            DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY+ EYV C  C+SPDTIL K+ RL+FL+CE C S  SVA IK GF+A  G++
Sbjct:  137 DEILEKDEALEDEDNKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGKR 325          
BLAST of DY258697 vs. ExPASy Swiss-Prot
Match: IF2B_MOUSE (Eukaryotic translation initiation factor 2 subunit 2 OS=Mus musculus GN=Eif2s2 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.164e-56
Identity = 108/190 (56.84%), Postives = 138/190 (72.63%), Query Frame = 2
Query:  308 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFRARVGRK 874
            DEI +  + L+    ED + D       +  W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY+ EYV C  C+SPDTIL K+ RL+FL+CE C S  SVA IK GF+A  G++
Sbjct:  137 DEILEKDEALED---EDSKKDDGISFSSQTAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGKR 323          
BLAST of DY258697 vs. ExPASy Swiss-Prot
Match: IF2B_PONAB (Eukaryotic translation initiation factor 2 subunit 2 OS=Pongo abelii GN=EIF2S2 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 2.593e-56
Identity = 109/191 (57.07%), Postives = 138/191 (72.25%), Query Frame = 2
Query:  308 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFRARVGRK 874
            DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY+ EYV C  C+SPDTIL K+ RL+FL+CE C S  S A IK GF+A  G++
Sbjct:  137 DEILEKDEALEDEDNKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFLQCETCHSRCSAASIKTGFQAVTGKR 325          
BLAST of DY258697 vs. ExPASy Swiss-Prot
Match: IF2B_DROME (Eukaryotic translation initiation factor 2 subunit 2 OS=Drosophila melanogaster GN=eIF-2beta PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 4.423e-56
Identity = 108/192 (56.25%), Postives = 137/192 (71.35%), Query Frame = 2
Query:  302 LNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRR-RTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFRARVGRK 874
            L++   D  DD      E+DE + S        W GSDRDY Y+ELL RVF I+ + NP++A  R+ + VMRPPQVLR GTKKT F NFMD+ KT+HR P H++ FLLAELGTSGS+DG Q+L++KGRF PK  E +LRRY+ EYV C  C+SP+TIL K+ RLFFL+CE CGS  SVA IK+GF+A  G++
Sbjct:  120 LDELFADQADDDKSEDKENDEDNSS-------TWFGSDRDYTYDELLKRVFEIILDKNPDMAAGRKPKFVMRPPQVLRVGTKKTSFANFMDIAKTLHRLPKHLLDFLLAELGTSGSMDGNQQLIIKGRFQPKQIENVLRRYIKEYVTCHTCRSPETILQKDTRLFFLQCESCGSRCSVASIKSGFQAVTGKR 304          
BLAST of DY258697 vs. ExPASy Swiss-Prot
Match: IF2BL_HUMAN (Eukaryotic translation initiation factor 2 subunit 2-like protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 9.854e-56
Identity = 105/176 (59.66%), Postives = 134/176 (76.14%), Query Frame = 2
Query:  353 EDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFRARVGRK 874
            ++ + DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY+ EYV C  C+SPDTIL K+ RL+FL+CE C S  SVA IK GF+A +G++
Sbjct:  144 DNKKDDGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDMRLYFLQCETCHSRCSVAIIKIGFQAVMGKR 319          
The following BLAST results are available for this feature:
BLAST of DY258697 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
IF2B_MALDO1.767e-11376.30Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_WHEAT2.092e-10672.69Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_ARATH5.697e-10471.16Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_BOVIN5.225e-5757.59Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_RABIT8.913e-5757.59Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_HUMAN8.913e-5757.59Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_MOUSE1.164e-5656.84Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_PONAB2.593e-5657.07Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_DROME4.423e-5656.25Eukaryotic translation initiation factor 2 subunit... [more]
IF2BL_HUMAN9.854e-5659.66Eukaryotic translation initiation factor 2 subunit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AD02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258697 ID=DY258697; Name=DY258697; organism=Citrus clementina; type=EST; length=1072bp
TTCGAATTCATTTCTTTAGCCGCAGGCCGTCAGCGACGGAAGAGAAGATC
TCAGTTTCGATTCTAGAAACTCGACTATGACGGACGAAAATCAAGTAGAT
GTGAAGGACGAGGTGGCAGAACTTGCCCCCTTCGATCCTACTAAAAAGAA
GAAGAAGAAGAAGGTTGTAATACAGGATCCTTCAGATGATTCTGTGGACA
AACTGGCCGAGATAACTGAAACTTTATCAGTCTCTGAGGGGCTTGAAAGT
ACTTTTACTGGTTTGAAAAAGAAGAAGAAGAAACCAGTAGAAAGCAGTCT
ATTGAACGATGAGATTGGGGATGCAGGAGACGATTTGGATGGTCACGTGG
GTGAGGATGATGAAGCTGATGGAAGTGGTGGTCCACGGCAGCGTTATCCA
TGGGAAGGGAGTGATCGCGACTATGAATATGAGGAGCTTCTTGGTAGGGT
CTTTAACATCCTCCGAGAGAATAATCCTGAACTTGCAGGAGATAGGCGTA
GAACAGTCATGAGACCTCCACAAGTTCTTCGTGAAGGAACAAAGAAAACT
GTTTTTGTCAATTTCATGGATCTCTGCAAGACCATGCATCGGCAGCCAGA
TCATGTCATGACATTTTTGCTTGCTGAACTGGGGACAAGTGGGTCACTGG
ACGGACAGCAAAGACTGGTCGTGAAGGGCCGATTTGCTCCCAAGAATTTT
GAAGGGATACTGCGTCGATATGTCAATGAATATGTCATCTGTCTTGGGTG
CAAAAGTCCTGACACGATACTTTCAAAGGAAAACCGCCTCTTCTTTCTCA
GATGTGAGAAGTGTGGGTCTGGACGATCAGTTGCTCCTATCAAAGCTGGT
TTCCGGGCACGTGTTGGTCGAAAAATGGTGGGATGGGATCTTGTGGTCCT
GCTTTTCTCCCGCATTTTGGAAAAAAAGAAGTTTGGGTTTCTTTTTTACC
TTATGGGGTTTTACTCCAATTTGGGTTTTTGACCAATTGGAATTTTACCT
ACCCGGGAAAATTTTGGAAATGGGGAGAGACCCTTTTATACCCAAAAAAG
GGATTGGATTAAATCCTTTTTT
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