DY258739

Overview
NameDY258739
Unique NameDY258739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1188
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1220 contig Ccv1_Contig1220:1..1188. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY258739 vs. ExPASy Swiss-Prot
Match: Y3272_ARATH (Kelch repeat-containing protein At3g27220 OS=Arabidopsis thaliana GN=At3g27220 PE=1 SV=1)

HSP 1 Score: 418.313 bits (1074), Expect = 4.374e-116
Identity = 209/342 (61.11%), Postives = 256/342 (74.85%), Query Frame = 2 
Query:   59 LFKILPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDQMKWKVLPSMPKPDSHIEFAWVLVNNSIVICWRHNRRSILNPKRWFWVGKIFPFKLETH*KCPGDW----KTPFYRVKTTP*RGYGNGMGSTFPSRTSQKRGTQN-NPAPQEKDLWK 1069
            +F  +PAPELKWE+M++APVPRLDG ++QI NLLYVF+GYGS+DYVHSHVD++NFTDN W  RF  P+EMA+SHLG+VTDGRY+YVV+GQ GPQCRGPT+ +FVLD+ TK W + P LP PRYAPATQ+WRGRLHVMGGS ENR     DHWS+AVKDGK L+ EWR E+PIPRGGPHRACVV +D+LLVIGGQEGDFMAKP SPIFKCSRR E+   +VYM+D++MKWK+LP MPK +SHIE AW++VNNSIVI         +  KR   VG+IF F+L+T       W    + P YRVKT    G+ NG    + +   + RG  N  P     ++W+
Sbjct:   91 IFADIPAPELKWEEMESAPVPRLDGYSVQINNLLYVFSGYGSLDYVHSHVDVFNFTDNKWCDRFHTPKEMANSHLGIVTDGRYVYVVSGQLGPQCRGPTSRSFVLDSFTKTWLEFPSLPAPRYAPATQIWRGRLHVMGGSKENRNAVAFDHWSIAVKDGKALD-EWREEVPIPRGGPHRACVVANDKLLVIGGQEGDFMAKPNSPIFKCSRRREIFNGEVYMMDEEMKWKMLPPMPKNNSHIESAWIIVNNSIVIVGGTTDWHPVT-KRLVLVGEIFRFQLDTL-----TWSVIGRLP-YRVKTAM-AGFWNGY--LYFTSGQRDRGPDNPQPGKVIGEMWR 421
The following BLAST results are available for this feature:
BLAST of DY258739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3272_ARATH4.374e-11661.11Kelch repeat-containing protein At3g27220 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3BA10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258739 ID=DY258739; Name=DY258739; organism=Citrus clementina; type=EST; length=1188bp
GAAAATATTGGAGTTAAAACTAAGAAGGATGTTGTTCCTAAGAGGATCTT
ACCAGCAACTTTTCAAGATTTTACCTGCACCAGAATTGAAATGGGAAAAG
ATGAAAGCAGCACCAGTGCCTCGTCTAGATGGGGCAGCTATACAGATTAA
GAATCTTCTTTATGTGTTTGCTGGATATGGCAGCATTGACTATGTGCATT
CACACGTTGATATCTACAATTTTACAGATAATACATGGGGAGGAAGATTT
GATATGCCAAGAGAAATGGCCCATTCACATTTAGGAATGGTAACAGATGG
TAGATATATCTATGTAGTTACCGGACAATATGGTCCGCAATGCAGAGGTC
CTACTGCCCATACATTCGTGCTCGATACTGAGACAAAGAAATGGCAGGAC
CTGCCACCCTTACCTGTTCCTCGGTATGCACCTGCAACTCAACTCTGGAG
AGGTAGACTACATGTGATGGGTGGTAGTGGGGAGAATCGGTACACACCTG
AAGTAGATCATTGGAGCCTTGCAGTCAAGGATGGAAAACCATTAGAAAAG
GAGTGGAGAACTGAAATTCCGATTCCTCGCGGAGGACCTCATAGGGCTTG
TGTTGTGGTTGATGATCGTCTACTTGTTATTGGTGGTCAAGAAGGTGATT
TTATGGCCAAACCAGGATCGCCTATTTTCAAGTGCTCTCGTAGGAATGAG
GTTGTATATGATGATGTCTACATGCTGGATGACCAGATGAAGTGGAAAGT
CTTGCCTTCTATGCCAAAACCAGATTCTCATATTGAATTTGCTTGGGTGC
TTGTCAACAATTCTATCGTCATTTGTTGGAGGCACAACAGAAGAAGCATC
CTAAACCCAAAAAGATGGTTCTGGGTTGGAAAAATATTTCCATTTAAACT
TGAAACCCACTGAAAGTGCCCTGGTGATTGGAAAACTCCCTTTTACCGGG
TAAAAACAACCCCATAGCGGGGTTACGGAAATGGGATGGGTTCCACTTTC
CCATCCAGGACCAGCCAAAAAAGGGGAACCCAAAACAACCCGGCCCCCCA
GGAAAAGGACCTGTGGAAATATTGTGGGAAAAAACCCAATTTGGTTATAT
TAACCCTCCAGAGAGGGGGAATTCCTTTGTTTGAAATTTTTTTTTGGTTT
GGGGAAATTTTTCTTTCCCCACCCTAAAAATTTTTTTT
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