DY258741

Overview
NameDY258741
Unique NameDY258741
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1082
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258741 vs. ExPASy Swiss-Prot
Match: LMBD1_ARATH (LIMR family protein At3g08930 OS=Arabidopsis thaliana GN=At3g08930 PE=2 SV=2)

HSP 1 Score: 340.502 bits (872), Expect = 2.380e-110
Identity = 167/226 (73.89%), Postives = 186/226 (82.30%), Query Frame = 1
Query:  103 MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQDKSVGKRIKSALIWVIMTAIVCALVLGILYGLVGKVDFTVRHLSSTTTNFPTSWEFXXXXXXXXXXXXXXXSAYLANETSEKTWTMRTTFPEYVVALATIVGSVLFSIFGG 780
            MGDFN                 ++YLLVNYQHPDDANQAYFPKFVVV GLS+A ISILMLPADVANR ACRHAIYNGACNLTLPMKDLWLA+YI+DA+LVFFVIPFAMF+YEGDQDK++GKRIKSALIWV+ TA+VCALVLGILYG++GKVDF+VRHL+S T+ FPTSW+F               SA+ AN TSEKTWTMRTTFPEYVVALATIVGSVLF+IFGG
Sbjct:    1 MGDFNLALVIVAIVVCVIVFISSIYLLVNYQHPDDANQAYFPKFVVVFGLSIAMISILMLPADVANRHACRHAIYNGACNLTLPMKDLWLAIYIVDAILVFFVIPFAMFFYEGDQDKTLGKRIKSALIWVVTTAVVCALVLGILYGVIGKVDFSVRHLASATSTFPTSWQF-SNTQPCIGNTARQCSAFTANPTSEKTWTMRTTFPEYVVALATIVGSVLFTIFGG 225          

HSP 2 Score: 78.5666 bits (192), Expect = 2.380e-110
Identity = 43/67 (64.18%), Postives = 51/67 (76.12%), Query Frame = 2
Query:  764 FRYLVGVGIACLPLELIFFFIRRPKAVITRSQYNKEATELGKKSRKFEKSSLIPFFQEKRRGFQGKK 964
            F    GVGIACLPL LI  FIRRPKAVITRSQY KEATELGKK+R+ +K++     QE+R G +G+K
Sbjct:  220 FTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATELGKKARELKKAA-DGLHQEERSGAKGRK 285          
BLAST of DY258741 vs. ExPASy Swiss-Prot
Match: LMBD2_ARATH (LIMR family protein At5g01460 OS=Arabidopsis thaliana GN=At5g01460 PE=2 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 4.581e-93
Identity = 185/306 (60.46%), Postives = 211/306 (68.95%), Query Frame = 1
Query:  103 MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQDKSVGKRIKSALIWVIMTAIVCALVLGILYGLVGKVDFTVRHLSSTTTNFPTSWEFXXXXXXXXXXXXXXXSAYLANETSEKTWTMRTTFPEYVVALATIVGSVLFSIFGGCW-DCLFAT*TYLFLHPTSKGSHHSLTV**GSN*TRXXXXXXXXXXLDTLLPGEKKGVPREKKWRKNCEVLGKKNLLHLE 1017
            MGDFN                 ++YLLVNYQHPDDANQAYFPKFVVV GLS+A ISILMLPADVANR ACRH+IYNGACNLTLPMKDLWLAVYI+DAVLVFF+IPFAMF+YEGDQDK++GKRIKSALIWV+ TA+VCALVLGILYG++GKVDF+VRHLSS TT FPTSW+F               SAY AN  SEKTW+MRTTFPEYVVALATIVGSVLF+IFGG    CL       F+         S  +      T               L  E++   + +KWRKN + + +K LL LE
Sbjct:    1 MGDFNLALVIVAIVVCVIVFISSIYLLVNYQHPDDANQAYFPKFVVVFGLSIAMISILMLPADVANRHACRHSIYNGACNLTLPMKDLWLAVYIVDAVLVFFIIPFAMFFYEGDQDKALGKRIKSALIWVVTTAVVCALVLGILYGVIGKVDFSVRHLSSATTTFPTSWQF-SNNQPCIGNTARQCSAYTANAASEKTWSMRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYI---KEATELGKKARDLKKAADALHQEERSGAKGRKWRKNVKAV-EKELLQLE 301          
BLAST of DY258741 vs. ExPASy Swiss-Prot
Match: LMBD1_ORYSJ (LIMR family protein Os06g0128200 OS=Oryza sativa subsp. japonica GN=Os06g0128200 PE=2 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 5.997e-85
Identity = 172/303 (56.77%), Postives = 198/303 (65.35%), Query Frame = 1
Query:  103 MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQDKSVGKRIKSALIWVIMTAIVCALVLGILYGLVGKVDFTVRHLSSTTTNFPTSWEFXXXXXXXXXXXXXXXSAYLANETSEKTWTMRTTFPEYVVALATIVGSVLFSIFGGCW-DCLFAT*TYLFLHPTSKGSHHSLTV**GSN*TRXXXXXXXXXXLDTLLPGEKKGVPREKKWRKNCEVLGKKNLL 1008
            MGDFN                 +VYLL+NYQHPDDANQAYFPK VVVLG++VA +SILMLPADVANRQACR AIY+GAC+LTLPMK LWLAVYI DAVLVF VIPFAMFYYEGDQDKSVGKR+ SAL+WV ++A+VC L+LGILYGLVGKVDFTVRHLSS    FP S+                 +AY A   S+ TWTMR TFPEYVVALATIVGSVLF+IFGG    CL     + F+         S  +      T               L  E+K   + +KWRKN + LGK+ +L
Sbjct:    1 MGDFNVALVIVAAVVSVLVLLVSVYLLINYQHPDDANQAYFPKLVVVLGITVALLSILMLPADVANRQACRRAIYSGACSLTLPMKTLWLAVYIADAVLVFLVIPFAMFYYEGDQDKSVGKRLTSALLWVAVSAVVCGLILGILYGLVGKVDFTVRHLSSAVETFPNSFTSFSTGQPCISTSPKQCAAYTAPANSQTTWTMRATFPEYVVALATIVGSVLFTIFGGVGIACLPLGLIFSFVRRPKAVITRSQYI---KEATELGKKARELKKAAEALHQEEKSGKKGRKWRKNVKALGKELVL 300          
BLAST of DY258741 vs. ExPASy Swiss-Prot
Match: Y3610_DICDI (LIMR family protein DDB_G0293610 OS=Dictyostelium discoideum GN=DDB_G0293610 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.567e-19
Identity = 68/226 (30.09%), Postives = 101/226 (44.69%), Query Frame = 1
Query:  169 NVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQ-DKSVGKRIKSALIWVIMTAIVCALVLGILYGLVGKVDF-TVRHLS--------------STTTNFPT------SWEFXXXXXXXXXXXXXXXSAYLANETSEKTWTMRTTFPEYVVALATIVGSVLFSIFGG 780
            ++YL+  +QHPDD N AYFPK +V+LG+++AA SILMLP DVAN+         G      PM  LW+ +YI+ AV    + PFAMF+YE ++ D + G +I  A           A +  +LY   G  +  T+  LS              + TT  P                          S Y+     ++    R +   +++ +    G +LF IFGG
Sbjct:   21 SLYLIAYFQHPDDKNVAYFPKIIVILGITLAATSILMLPLDVANQGG------KGG----FPMDILWIVIYIVVAVFAIVICPFAMFFYESEEADPAAGSQIAGAFKGTFAILFAFAALTIVLYVFFGVAEIPTIVILSRFQIINYPIATDSINITTTLPEIASIVGGGNDKIKLDPGNPELLGNGSEYVEYRLDKEFLQFRVSIALFIITMVAFFGWLLFIIFGG 236          
BLAST of DY258741 vs. ExPASy Swiss-Prot
Match: Y3707_DICDI (LIMR family protein DDB_G0283707 OS=Dictyostelium discoideum GN=DDB_G0283707 PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.664e-18
Identity = 52/129 (40.31%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  169 NVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQ-DKSVGKRIKSAL---IWVIMTAIVCALVLGILYGL 543
            ++YL+  +QHPDD N AYFPK +V+LGL++AA SILMLP DVAN         +G      PM  LW+ +YI  AV    + PFAMF+YE ++ D   G +I  A      ++       +VL + +G+
Sbjct:   21 SLYLIAYFQHPDDKNVAYFPKIIVILGLTLAATSILMLPLDVAN---------DGGSG-GFPMDILWIIIYIAVAVFAVVICPFAMFFYESEEADPGAGSQIAGAFKGTFAILFAFTALTIVLYVFFGV 139          
The following BLAST results are available for this feature:
BLAST of DY258741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LMBD1_ARATH2.380e-11073.89LIMR family protein At3g08930 OS=Arabidopsis thali... [more]
LMBD2_ARATH4.581e-9360.46LIMR family protein At5g01460 OS=Arabidopsis thali... [more]
LMBD1_ORYSJ5.997e-8556.77LIMR family protein Os06g0128200 OS=Oryza sativa s... [more]
Y3610_DICDI2.567e-1930.09LIMR family protein DDB_G0293610 OS=Dictyostelium ... [more]
Y3707_DICDI1.664e-1840.31LIMR family protein DDB_G0283707 OS=Dictyostelium ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3BA12FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258741 ID=DY258741; Name=DY258741; organism=Citrus clementina; type=EST; length=1082bp
AAAAAACAAAAAAAAAAGGACCAGATCTACACAAAATTTGCTGAAACCCT
AATTCGTGCGATCCGTCGTTTTGATCGGAATCGAGAGAGAGGTTAAAACA
AAATGGGTGATTTTAACCTCGCTCTGGTGATCGTCGCGATAGTGGTGTGC
GTTTTGGTATTCATTTTCAATGTCTATCTTCTCGTTAACTACCAGCATCC
CGACGACGCCAACCAGGCGTATTTTCCGAAATTCGTCGTCGTTTTGGGGC
TTTCCGTTGCCGCTATTTCAATTCTTATGTTGCCGGCTGACGTGGCCAAT
CGGCAGGCGTGTAGGCACGCGATTTATAATGGCGCCTGTAATCTCACCTT
GCCGATGAAGGATCTTTGGCTTGCTGTCTATATTCTCGATGCGGTGCTTG
TTTTCTTCGTTATTCCGTTCGCAATGTTCTATTACGAAGGCGACCAGGAT
AAGAGTGTGGGCAAAAGGATTAAGAGCGCTTTAATTTGGGTGATTATGAC
GGCTATTGTCTGTGCCCTTGTGCTTGGCATTTTGTATGGTCTAGTTGGGA
AGGTTGACTTCACTGTTAGACACCTCTCTTCAACTACTACTAATTTTCCG
ACTTCTTGGGAGTTCTCTGGTGGTCAACAATGTGTTGGTGGAAGTGGCGT
ACACCAGTGTTCGGCATATTTAGCAAATGAAACATCAGAAAAAACATGGA
CGATGCGCACCACCTTCCCAGAATATGTTGTTGCTCTAGCTACAATTGTT
GGATCAGTACTTTTTTCGATATTTGGTGGGTGTTGGGATTGCTTGTTTGC
CACTTGAACTTATCTTTTTCTTCATCCGACGTCCAAAGGCAGTCATCACT
CGCTCACAGTATAATAAGGAAGCAACTGAACTAGGAAAGAAAAGCAGAAA
ATTTGAAAAAAGCAGCTTGATACCCTTCTTCCAGGAGAAAAGAAGGGGGT
TCCAAGGGAAAAAAAATGGCGGAAAAATTGTGAAGTCTTGGGGAAAAAGA
ATTTGCTACATTTGGAAAAAAAATGTAAAGCTTTTAAAAAAAAAATGTTC
CCTCCAGGGGGAAAAAGGGGGGGAAAACTTCT
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