DY258748

Overview
NameDY258748
Unique NameDY258748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1228
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258748 vs. ExPASy Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 7.273e-29
Identity = 84/166 (50.60%), Postives = 98/166 (59.04%), Query Frame = 1
Query:  139 KVELIELMEEWVDWKVVAPALRW*VCSIDGVVLPEDEGLNPS*TSFFHVHNILTVIMAGIVESITPVVLIVKVDRVGSSEATLLAHFVIRPFSYGLVVLPVYSKGFIYCP*GRRTD*RSSNEEVRAGVSTSTDLALGVSYPTLNDAPRLIYNV*KIVVGAAHAPEY 636
            K +L E+ EE   +KV APA    V  ID VV P + GL+PS TSFF V NI T I  G VE ITPV LI K D+VGSSEA LLA   IRPFSYGLVV  VY  G ++ P           E+  AGVS  T L+L +SYPT+  AP +  N  K V+  A A EY
Sbjct:   95 KGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALATEY 260          
BLAST of DY258748 vs. ExPASy Swiss-Prot
Match: RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 1.620e-28
Identity = 83/166 (50.00%), Postives = 97/166 (58.43%), Query Frame = 1
Query:  139 KVELIELMEEWVDWKVVAPALRW*VCSIDGVVLPEDEGLNPS*TSFFHVHNILTVIMAGIVESITPVVLIVKVDRVGSSEATLLAHFVIRPFSYGLVVLPVYSKGFIYCP*GRRTD*RSSNEEVRAGVSTSTDLALGVSYPTLNDAPRLIYNV*KIVVGAAHAPEY 636
            K +L E+ EE   +KV APA    V  ID VV P + GL+PS TSFF V NI T I  G VE ITPV LI + D+VGSSEA LLA   IRPFSYGLVV  VY  G ++ P           E+  +G+S  T LAL VSYPTL  AP +  N  K  +  A A EY
Sbjct:   94 KGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATEY 259          
BLAST of DY258748 vs. ExPASy Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.764e-28
Identity = 83/166 (50.00%), Postives = 97/166 (58.43%), Query Frame = 1
Query:  139 KVELIELMEEWVDWKVVAPALRW*VCSIDGVVLPEDEGLNPS*TSFFHVHNILTVIMAGIVESITPVVLIVKVDRVGSSEATLLAHFVIRPFSYGLVVLPVYSKGFIYCP*GRRTD*RSSNEEVRAGVSTSTDLALGVSYPTLNDAPRLIYNV*KIVVGAAHAPEY 636
            K +L E+ EE   +KV APA    V  ID VV P + GL+PS TSFF V NI T I  G VE ITPV LI K D+VGSSEA LLA   IRPFSYGLVVL VY  G ++ P            +  AGVS  T L+L +SYPTL  AP +  N  K V+  A   +Y
Sbjct:   95 KGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIGKFAAGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAVAVETDY 260          
BLAST of DY258748 vs. ExPASy Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 3.610e-28
Identity = 82/166 (49.40%), Postives = 97/166 (58.43%), Query Frame = 1
Query:  139 KVELIELMEEWVDWKVVAPALRW*VCSIDGVVLPEDEGLNPS*TSFFHVHNILTVIMAGIVESITPVVLIVKVDRVGSSEATLLAHFVIRPFSYGLVVLPVYSKGFIYCP*GRRTD*RSSNEEVRAGVSTSTDLALGVSYPTLNDAPRLIYNV*KIVVGAAHAPEY 636
            K +L E+ EE   +KV APA    V  ID VV P + GL+PS TSFF V NI T I  G VE ITPV LI + D+VGSSEA LLA   IRPFSYGLVV  VY  G ++ P           E+  +G+S  T LAL VSYPTL  AP +  N  K  +  A A +Y
Sbjct:   94 KGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATDY 259          
BLAST of DY258748 vs. ExPASy Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 1.517e-26
Identity = 77/166 (46.39%), Postives = 96/166 (57.83%), Query Frame = 1
Query:  139 KVELIELMEEWVDWKVVAPALRW*VCSIDGVVLPEDEGLNPS*TSFFHVHNILTVIMAGIVESITPVVLIVKVDRVGSSEATLLAHFVIRPFSYGLVVLPVYSKGFIYCP*GRRTD*RSSNEEVRAGVSTSTDLALGVSYPTLNDAPRLIYNV*KIVVGAAHAPEY 636
            K +L E+ EE   +KV APA    V  +D VV P + GL+PS TSFF V NI T I  G VE ITPV LI K D+VGSSE+ LLA   IRPFSYGLV+  VY  G ++ P           E+  +GVS    ++L +SYPT+  AP +  N  K V+  A   EY
Sbjct:   95 KGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEY 260          
BLAST of DY258748 vs. ExPASy Swiss-Prot
Match: RLA0_MAIZE (60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 2.190e-25
Identity = 76/166 (45.78%), Postives = 93/166 (56.02%), Query Frame = 1
Query:  139 KVELIELMEEWVDWKVVAPALRW*VCSIDGVVLPEDEGLNPS*TSFFHVHNILTVIMAGIVESITPVVLIVKVDRVGSSEATLLAHFVIRPFSYGLVVLPVYSKGFIYCP*GRRTD*RSSNEEVRAGVSTSTDLALGVSYPTLNDAPRLIYNV*KIVVGAAHAPEY 636
            K +L E+ EE   +KV APA    V  +D VV P + GL+PS TSFF V NI T I  G VE ITPV LI K ++VGSSE+ LLA   IRPFSYGL V  VY  G ++ P           E+   GVS    L+L +SYPTL   P +  N  K V+  A   +Y
Sbjct:   95 KGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGEKVGSSESALLAKLGIRPFSYGLQVTSVYEDGSVFSPEVLDLSEEDLIEKFATGVSMVASLSLAISYPTLAAVPHMFINGYKNVLAVAVETDY 260          
BLAST of DY258748 vs. ExPASy Swiss-Prot
Match: RLA0_LUPLU (60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 7.789e-23
Identity = 77/163 (47.24%), Postives = 88/163 (53.99%), Query Frame = 1
Query:  148 LIELMEEWVDWKVVAPALRW*VCSIDGVVLPEDEGLNPS*TSFFHVHNILTVIMAGIVESITPVVLIVKVDRVGSSEATLLAHFVIRPFSYGLVVLPVYSKGFIYCP*GRRTD*RSSNEEVRAGVSTSTDLALGVSYPTLNDAPRLIYNV*KIVVGAAHAPEY 636
            L E+ EE   +KV APA    V  ID VV P + GL+PS TSFF V NI T I  G VE ITPV LI K D+VGSSEA LLA   IRPFSYGLVVL VY  G ++ P           E+   GVS           P  + AP +  N  K V+  A A EY
Sbjct:   98 LKEVSEEVAKYKVGAPACVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFKPEVLDLTEDDLLEKFAIGVSQCYFSDTSHFIPNPSAAPHVFINAYKNVLAVAVATEY 260          
BLAST of DY258748 vs. ExPASy Swiss-Prot
Match: RLA0_CHERU (60S acidic ribosomal protein P0 OS=Chenopodium rubrum PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.866e-22
Identity = 72/147 (48.98%), Postives = 84/147 (57.14%), Query Frame = 1
Query:  139 KVELIELMEEWVDWKVVAPALRW*VCSIDGVVLPEDEGLNPS*TSFFHVHNILTVIMAGIVESITPVVLIVKVDRVGSSEATLLAHFVIRPFSYGLVVLPVYSKGFIYCP*GRRTD*RSSNEEVRAGVSTSTDLALGVSYPTLNDAP 579
            K +L ++ EE   +KV APA    V  ID VV P + GL+PS TSFF V NI T I  G VE IT V LI K ++VGSSEA LLA   IRPFSYGL V  VY  G ++ P                GVS  T L+L +SYPTL  AP
Sbjct:   95 KGDLNQVREEISKYKVGAPARFGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITAVELIKKGEKVGSSEAALLAKLGIRPFSYGLNVESVYDDGSVFSPEVLDLTEDDLLARFATGVSMVTSLSLAISYPTLAAAP 241          
BLAST of DY258748 vs. ExPASy Swiss-Prot
Match: RLA0_CERCA (60S acidic ribosomal protein P0 OS=Ceratitis capitata GN=RpLP0 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.867e-17
Identity = 57/165 (34.55%), Postives = 87/165 (52.73%), Query Frame = 1
Query:  139 KVELIELMEEWVDWKVVAPALRW*VCSIDGVVLPEDEGLNPS*TSFFHVHNILTVIMAGIVESITPVVLIVKVDRVGSSEATLLAHFVIRPFSYGLVVLPVYSKGFIYCP*GRRTD*RSSNEEVRAGVSTSTDLALGVSYPTLNDAPRLIYNV*KIVVGAAHAPE 633
            K +L E+ ++ ++ KV APA    +  +  ++  ++ GL P  TSFF   +I T I  G +E I  V ++   D+VG+SEATLL    I PFSYGL +  VY  G I+ P            + +AGV+    ++L + YPT+  AP  I N  K ++  A + E
Sbjct:   92 KGDLAEVRDKLLESKVRAPARAGAIAPLPVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLAITQVYDSGSIFSPEILDIKPEDLRAKFQAGVANLAAVSLQIGYPTIASAPHSIANGFKNLLAIAASTE 256          
BLAST of DY258748 vs. ExPASy Swiss-Prot
Match: RLA0_DROME (60S acidic ribosomal protein P0 OS=Drosophila melanogaster GN=RpLP0 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.387e-17
Identity = 58/165 (35.15%), Postives = 85/165 (51.52%), Query Frame = 1
Query:  139 KVELIELMEEWVDWKVVAPALRW*VCSIDGVVLPEDEGLNPS*TSFFHVHNILTVIMAGIVESITPVVLIVKVDRVGSSEATLLAHFVIRPFSYGLVVLPVYSKGFIYCP*GRRTD*RSSNEEVRAGVSTSTDLALGVSYPTLNDAPRLIYNV*KIVVGAAHAPE 633
            K +L E+ ++ ++ KV APA    +  +  ++  ++ GL P  TSFF   +I T I  G +E I  V ++   D+VG+SEATLL    I PFSYGL+V  VY  G I+ P            + + GV+    + L V YPT+  AP  I N  K ++  A   E
Sbjct:   92 KGDLAEVRDKLLESKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAATTE 256          
The following BLAST results are available for this feature:
BLAST of DY258748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RLA01_ARATH7.273e-2950.6060S acidic ribosomal protein P0-1 OS=Arabidopsis t... [more]
RLA02_ARATH1.620e-2850.0060S acidic ribosomal protein P0-2 OS=Arabidopsis t... [more]
RLA0_SOYBN2.764e-2850.0060S acidic ribosomal protein P0 OS=Glycine max PE=... [more]
RLA03_ARATH3.610e-2849.4060S acidic ribosomal protein P0-3 OS=Arabidopsis t... [more]
RLA0_ORYSJ1.517e-2646.3960S acidic ribosomal protein P0 OS=Oryza sativa su... [more]
RLA0_MAIZE2.190e-2545.7860S acidic ribosomal protein P0 OS=Zea mays GN=RP-... [more]
RLA0_LUPLU7.789e-2347.2460S acidic ribosomal protein P0 OS=Lupinus luteus ... [more]
RLA0_CHERU3.866e-2248.9860S acidic ribosomal protein P0 OS=Chenopodium rub... [more]
RLA0_CERCA2.867e-1734.5560S acidic ribosomal protein P0 OS=Ceratitis capit... [more]
RLA0_DROME6.387e-1735.1560S acidic ribosomal protein P0 OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BB10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258748 ID=DY258748; Name=DY258748; organism=Citrus clementina; type=EST; length=1228bp
TGAAATTGAGGATTGCCGTGGAGGTTATAACCGCTGGTGGCCGTGGAGGT
TATAACGGCGCGTGGCCGATGGTGGCTATGGAGGTGGTGGGGGCTATGGC
GGTGGTGGGGGCTATGGCGGTGTTGGGTTGATTGGCCGAAGGTTGAGTTG
ATAGAGTTGATGGAGGAGTGGGTTGATTGGAAGGTTGTAGCTCCGGCTCT
TCGCTGGTAGGTCTGCTCAATTGATGGGGTTGTTCTTCCCGAGGACGAAG
GTCTCAACCCCTCCTAGACCTCCTTCTTCCATGTGCATAACATTCTCACC
GTGATTATGGCGGGTATTGTTGAGTCTATCACGCCTGTGGTGCTTATTGT
GAAGGTGGACAGGGTGGGATCTTCTGAGGCTACCCTGCTTGCACACTTTG
TGATTAGACCTTTCTCTTATGGTCTTGTTGTCCTGCCAGTCTATTCTAAA
GGGTTCATCTACTGTCCATGAGGTCGTAGAACTGACTGACGATCATCTAA
TGAAGAAGTTCGTGCAGGTGTATCGACGAGCACCGATCTGGCACTTGGCG
TATCATACCCGACGCTGAACGATGCTCCACGCTTGATCTACAATGTATAG
AAGATTGTGGTAGGGGCTGCTCATGCTCCTGAGTATTAAATCTGTTAGGC
CGATACAGAGACGGAGAACGTGTACGTACTTATACAGCTTGCTGGAAGCT
GGTGTACATCGTAGCTATGATGACGTGAATGTTCATCTGCTTGTTGCAAC
AATGTAAGAAATCTTATTACAGACTCTCTTCTGATGCTAATAAGGATTCG
GCCCTACACGTGGCTAAACTTAGATACCGTGTAGGTGGATCTCTAAAAAG
GTGAAATACAAGCAACAAAGATTGCGTTGGGGTTTTACTCCTTATGGATA
GTAGACAACCCCAGGGTGGAGTTTTTGCGCATTTCCCCCTGTGTTCCGGA
AAAATAACACCCATTTAAAATTTTATTTTATAGTAAAAAAAATTTCTGGG
GCCTAGATGCCAAAGTGTGGCTCTATATAACAAGGAAAAAACTTTCCCAT
TTGTCTTTTTGTAAAGAAAACAAAAATAATACAAAAGGACAAAAAAAAAA
AAAACTATTATTTTTTGTAACCTTCGGTGGGAAGAAAAAAAAACCCTACG
TCGTTGTGAGTACTGGAAAATTTAGTGGGTGGCGAAGCCAACCCACGCGG
GCCGGTCCCTTTCTCGTCCTTCTCACCT
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