DY258751

Overview
NameDY258751
Unique NameDY258751
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1221
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig305 contig Ccv1_Contig305:1104..2325. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258751 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 5.454e-77
Identity = 142/164 (86.59%), Postives = 151/164 (92.07%), Query Frame = 1
Query:    1 ESFIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            E+F  GFNQVFDITSLQIFTP ELD+LLCGRRELWE   LAEHIKFDHGY AKSPAI+NLLEIMGE T DQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSST+ + A+NG G SE+ADDDLPSVMTCANYLKLPPYSTKEIMYKKL+YAI+EGQGSFDLS
Sbjct: 1726 EAFRSGFNQVFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEIMGELTADQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTS-SAAANGAGASETADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1888          
BLAST of DY258751 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 4.073e-48
Identity = 99/164 (60.37%), Postives = 120/164 (73.17%), Query Frame = 1
Query:    1 ESFIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            E+F  GFNQVF I  L+IF   EL+ +LCG  +L+    + +HIKFDHGYT+ SP +  LL+I+ EF  +QQRAF QFVTG+PRLP GGLA L+PKLTIVRKH              S+S+D DLPSVMTCANYLKLPPYS+KE M +KL+YAI+EGQGSF LS
Sbjct: 1352 EAFRSGFNQVFSIEHLRIFNEEELETMLCGECDLFSMNEVLDHIKFDHGYTSSSPPVEYLLQILHEFDREQQRAFLQFVTGSPRLPHGGLASLSPKLTIVRKHG-------------SDSSDTDLPSVMTCANYLKLPPYSSKEKMKEKLIYAITEGQGSFHLS 1502          
BLAST of DY258751 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.577e-36
Identity = 86/165 (52.12%), Postives = 103/165 (62.42%), Query Frame = 1
Query:    1 ESFIFGFNQVFDITSLQIFTPHELDHLLCGRR-ELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            +SF  GF  VF ++ LQ F P ELD LLCG + + W+   L E  + DHGYT  S A+  L EI+  F  +QQR F QFVTG+PRLP GG   LNP LTIVRK   +           +E+ DD LPSVMTC NYLKLP YS+ EIM +KL+ A  EGQ SF LS
Sbjct: 1839 DSFRDGFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFES-----------TENPDDFLPSVMTCVNYLKLPDYSSIEIMREKLLIAAREGQQSFHLS 1992          
BLAST of DY258751 vs. ExPASy Swiss-Prot
Match: YDE1_SCHPO (Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe GN=SPAC12B10.01c PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 1.406e-32
Identity = 80/164 (48.78%), Postives = 98/164 (59.76%), Query Frame = 1
Query:    1 ESFIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            E+F  GF+ VF  TSLQ+ T HEL  L     E W  A L + I  DHGYT +SP I  LL +M +    +QR F QF+TG+ +LP GG A LNP LT+VR+ +            P    DD LPSVMTC NYLKLP YS+ E++  +L  AI EGQGSF LS
Sbjct: 1495 EAFQNGFSSVFPYTSLQVLTEHELVTLFGTVDEDWSYATLMKSIVADHGYTMESPTIQRLLTLMSQMNFQEQRDFLQFITGSRKLPIGGFAGLNPPLTVVRRLNE-----------PPYVPDDYLPSVMTCVNYLKLPEYSSSEVLGSRLSKAILEGQGSFHLS 1647          
BLAST of DY258751 vs. ExPASy Swiss-Prot
Match: UFD4_YEAST (Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae GN=UFD4 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 9.434e-29
Identity = 72/164 (43.90%), Postives = 98/164 (59.76%), Query Frame = 1
Query:    1 ESFIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            ++FI GF++VF    + I  P EL  +     E W  A L  ++  +HGYT  S  I + + I+  F   ++R F QF+TG+P+LP GG   LNPK T+V KH       A +G     +AD+ LPSVMTCANYLKLP Y++K+IM  +L  AI EG G+F LS
Sbjct: 1331 KAFIEGFSKVFSYERMLILFPDELVDIFGRVEEDWSMATLYTNLNAEHGYTMDSSIIHDFISIISAFGKHERRLFLQFLTGSPKLPIGGFKSLNPKFTVVLKH-------AEDGL----TADEYLPSVMTCANYLKLPKYTSKDIMRSRLCQAIEEGAGAFLLS 1483          
BLAST of DY258751 vs. ExPASy Swiss-Prot
Match: HECD1_HUMAN (E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 7.735e-23
Identity = 60/157 (38.22%), Postives = 88/157 (56.05%), Query Frame = 1
Query:    1 ESFIFGFNQVFDITSLQIFTPHELDHLLCGRRE-LWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISE 468
            E+F  GFN+VF +  L  F+  E+  +LCG +   W    +  + +   GYT  SP  +  + ++   + D+++AF QF TG   LPPGGLA L+P+LT+VRK  +T               D   PSV TC +YLKLP YS++EIM ++L+ A  E
Sbjct: 2465 EAFRDGFNKVFPMEKLSSFSHEEVQMILCGNQSPSWAAEDIINYTEPKLGYTRDSPGFLRFVRVLCGMSSDERKAFLQFTTGCSTLPPGGLANLHPRLTVVRKVDAT---------------DASYPSVNTCVHYLKLPEYSSEEIMRERLLAATME 2606          
BLAST of DY258751 vs. ExPASy Swiss-Prot
Match: UPL6_ARATH (E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.413e-16
Identity = 59/162 (36.42%), Postives = 81/162 (50.00%), Query Frame = 1
Query:    7 FIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            F+ GF Q+     + +F  HEL  L+ G  +  +   L  +  +  GY A    I    E+M  F+ + Q+ F +FVTG  R P  G   L P   I R     A  +ASN       + D LP+  TC N LKLPPY +KE++  KL+YAIS  +  FDLS
Sbjct:  880 FLRGFQQLIPKEWIDMFNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHAGHYVIDMFWEVMKSFSTENQKKFLKFVTGCSRGPLLGFKYLEPAFCIQR-----AAGSASN------ESVDRLPTSATCMNLLKLPPYQSKELLETKLMYAIS-AEAGFDLS 1029          
BLAST of DY258751 vs. ExPASy Swiss-Prot
Match: UBE3A_HUMAN (Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UBE3A PE=1 SV=4)

HSP 1 Score: 84.7297 bits (208), Expect = 1.196e-15
Identity = 58/160 (36.25%), Postives = 85/160 (53.12%), Query Frame = 1
Query:    1 ESFIFGFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 477
            ++F  GF+ V + + L+ +F P E++ L+CG R L +  AL E  ++D GYT  S  I    EI+  FT +Q+R F QF TG  R P GGL  L  K+ I +    T                + LP+  TC N L LP YS+KE + ++L+ AI+  +G
Sbjct:  731 KAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNL-DFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL--KMIIAKNGPDT----------------ERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKG 871          
BLAST of DY258751 vs. ExPASy Swiss-Prot
Match: UBE3A_MOUSE (Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ube3a PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 7.753e-15
Identity = 57/160 (35.62%), Postives = 84/160 (52.50%), Query Frame = 1
Query:    1 ESFIFGFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 477
            ++F  GF+ V + + L+ +F P E++ L+CG R L +  AL E  ++D GYT +S  I    EI+  FT +Q+R F  F TG  R P GGL  L  K+ I +    T                + LP+  TC N L LP YS+KE +  +L+ AI+  +G
Sbjct:  741 KAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNL-DFQALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLLFTTGTDRAPVGGLGKL--KMIIAKNGPDT----------------ERLPTSHTCFNVLLLPEYSSKEKLNVRLLKAITYAKG 881          
BLAST of DY258751 vs. ExPASy Swiss-Prot
Match: YFK7_SCHPO (Probable E3 ubiquitin protein ligase C167.07c OS=Schizosaccharomyces pombe GN=SPAC167.07c PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.617e-12
Identity = 52/158 (32.91%), Postives = 71/158 (44.94%), Query Frame = 1
Query:    4 SFIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 477
            +F  GF Q+ D   L +F   E+  L+ G     +   L  H  +  GY   SP IV   E++ EF  + +R+F +FVT   R P  G   L P   I             NG   +      LP+  TC N LKLP YSTK+ +  KL+ A+  G G
Sbjct:  884 AFTNGFTQIIDPHWLAMFHESEIQILVGGDPVPIDIDDLRRHTVYAGGYEPNSPTIVLFWEVLREFEEEDKRSFVKFVTSVARPPILGFKALMPSFCI-----------RVNGEDETR-----LPTASTCVNLLKLPMYSTKQTLRDKLLTAVRSGVG 1025          
The following BLAST results are available for this feature:
BLAST of DY258751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
UPL3_ARATH5.454e-7786.59E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis th... [more]
UPL4_ARATH4.073e-4860.37E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis th... [more]
TRIPC_HUMAN3.577e-3652.12Probable E3 ubiquitin-protein ligase TRIP12 OS=Hom... [more]
YDE1_SCHPO1.406e-3248.78Probable ubiquitin fusion degradation protein C12B... [more]
UFD4_YEAST9.434e-2943.90Ubiquitin fusion degradation protein 4 OS=Saccharo... [more]
HECD1_HUMAN7.735e-2338.22E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens... [more]
UPL6_ARATH1.413e-1636.42E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis th... [more]
UBE3A_HUMAN1.196e-1536.25Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UB... [more]
UBE3A_MOUSE7.753e-1535.63Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ub... [more]
YFK7_SCHPO1.617e-1232.91Probable E3 ubiquitin protein ligase C167.07c OS=S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BC05FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258751 ID=DY258751; Name=DY258751; organism=Citrus clementina; type=EST; length=1221bp
GAATCTTTTATATTTGGATTCAATCAGGTCTTTGACATCACATCATTACA
AATATTTACTCCTCATGAATTGGACCATCTGCTTTGTGGCCGTAGAGAGT
TGTGGGAGCCTGCGGCGCTTGCTGAGCATATAAAATTCGATCATGGATAC
ACTGCCAAGAGTCCTGCAATTGTTAACTTACTAGAGATCATGGGAGAATT
CACACCAGATCAGCAGCGTGCCTTCTGTCAGTTTGTTACTGGTGCACCTC
GTCTTCCACCGGGTGGGTTGGCGGTGCTGAATCCAAAGCTTACCATTGTC
AGAAAGCATTCTTCAACTGCACCTAATACAGCATCAAATGGAACCGGGCC
TTCGGAATCAGCGGATGATGACTTGCCAAGTGTCATGACTTGTGCCAATT
ACCTGAAGCTTCCTCCTTACTCTACCAAGGAAATTATGTACAAGAAACTG
GTTTATGCAATAAGCGAAGGGCAGGGATCTTTTGATCTGTCATGAGTTCT
CAAAACTAACCGATGGACCTTTGTATATTAATATATGTGTCATCAAGTCA
ATTCTCTTACCTGGGGATTATTCATCTTTGAAAGTAGCATCATATTTCAG
TCAAATAATGGCTGCTTTTCACTGCCCTTGTATCAATGTTCACATCATTG
GCAAGTTGATTTTTTTTGTTTCAGGTCCGACTTCAGGCTGCCCCAGTGCC
ACACTCTCTCAACAGAGATTTGAAGAGGGAAATTGTGGAGCAGTTTTTTG
GCTGCTGCTAGGACTTTGCATATAAATAGGAAACTTAAAATTTTTGTCTT
TTTTCCCTCATTGACAAGTTATTGGCTGCAGAATCAACTTAACATGGATG
GAATAAAAATGATGGGAAAGAAAAAAAAATTGGTGAAAATGTATGCCCTA
ATTTAAACCCCAATTTCCTTTCCAAAAAAAAATAAAAAAAAAAACCCCCA
CTTTTCTTGGACAAATGTGGGCCATTTATAAAAAAGGCTTGGGCTTACCT
ATTTTGTTGCCACCAAAACCGGTCCCCCTTTCCCGCCAAAAAAAAAATCC
TTTAATTTTTTCCACACCCAGCCTAAAAACACCCCCCCAAACTAGAAACC
CCAATAATAAAAGGGGCGCACAAAAATGCGCTTTCCCCCGGCGCCCACCC
TCTTTGGCCCCCCGGGCTGCACCTCAAAAAAACACCCCTCCTGAAATGGT
TCTATTCCTCCTTTGACTAAC
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