DY258790

Overview
NameDY258790
Unique NameDY258790
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1272
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9910 contig Ccv1_Contig9910:662..1933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258790 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.086e-14
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 2
Query:   26 GSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK*NS 157
            GSVNGANCKEL  QPDVDGFLVGGASLKPEFIDIIK+AE+K N+
Sbjct:  211 GSVNGANCKELGGQPDVDGFLVGGASLKPEFIDIIKAAEVKRNA 254          
BLAST of DY258790 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 9.929e-13
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 2
Query:   26 GSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 148
            GSV GANCKELAA+PDVDGFLVGGASLKPEFIDII SA +K
Sbjct:  211 GSVTGANCKELAAKPDVDGFLVGGASLKPEFIDIINSATVK 251          
BLAST of DY258790 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.297e-12
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 2
Query:   26 GSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 148
            GSVNGAN KELA QPD+DGFLVGGASLKPEF+DIIKSA +K
Sbjct:  211 GSVNGANSKELAGQPDIDGFLVGGASLKPEFVDIIKSATVK 251          
BLAST of DY258790 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.694e-12
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 2
Query:   26 GSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 148
            GSVNG NCKEL  Q DVDGFLVGGASLKPEFIDIIK+AE+K
Sbjct:  211 GSVNGGNCKELGGQADVDGFLVGGASLKPEFIDIIKAAEVK 251          
BLAST of DY258790 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 2.889e-12
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 2
Query:   26 GSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 148
            GSV GA+CKELAAQPDVDGFLVGGASLKPEFIDII +A +K
Sbjct:  211 GSVTGASCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of DY258790 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 3.773e-12
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 2
Query:   26 GSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 148
            GSV  ANCKELAAQPDVDGFLVGGASLKPEFIDII +A +K
Sbjct:  211 GSVTAANCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of DY258790 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.927e-12
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 2
Query:   26 GSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 148
            GSV+G+NCKEL  Q DVDGFLVGGASLKPEFIDIIK+AE+K
Sbjct:  152 GSVSGSNCKELGGQTDVDGFLVGGASLKPEFIDIIKAAEVK 192          
BLAST of DY258790 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 2.445e-11
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 2
Query:   26 GSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 148
            GSV GA+CKELAAQ DVDGFLVGGASLKPEFIDII +A +K
Sbjct:  211 GSVTGASCKELAAQADVDGFLVGGASLKPEFIDIINAAAVK 251          
BLAST of DY258790 vs. ExPASy Swiss-Prot
Match: TPIS_RAT (Triosephosphate isomerase OS=Rattus norvegicus GN=Tpi1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 9.293e-11
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 2
Query:   26 GSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 142
            GSV GA CKELA+QPDVDGFLVGGASLKPEF+DII + +
Sbjct:  211 GSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 249          
BLAST of DY258790 vs. ExPASy Swiss-Prot
Match: TPIS_RABIT (Triosephosphate isomerase OS=Oryctolagus cuniculus GN=TPI1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.293e-11
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 2
Query:   26 GSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 142
            GSV GA CKELA+QPDVDGFLVGGASLKPEF+DII + +
Sbjct:  210 GSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 248          
The following BLAST results are available for this feature:
BLAST of DY258790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
TPIS_PETHY3.086e-1486.36Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_ORYSJ9.929e-1387.80Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_COPJA1.297e-1285.37Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_ARATH1.694e-1285.37Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_SECCE2.889e-1285.37Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_MAIZE3.773e-1285.37Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_LACSA4.927e-1282.93Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_HORVU2.445e-1182.93Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_RAT9.293e-1179.49Triosephosphate isomerase OS=Rattus norvegicus GN=... [more]
TPIS_RABIT9.293e-1179.49Triosephosphate isomerase OS=Oryctolagus cuniculus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BH10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258790 ID=DY258790; Name=DY258790; organism=Citrus clementina; type=EST; length=1272bp
GATTTTTCGTTGTTTAACTATCTAAGGATCCGTAAATGGTGCAAACTGCA
AGGAATTGGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTGCT
TCGTTGAAACCGGAGTTCATTGACATCATCAAATCTGCTGAGCTGAAGTA
AAATTCTTGAGCTTTATTTCAAGGGCAGTTTGCTGATGAAGTATTTACTG
TTTGTGGATATATAGAATACGTTTGGTATAATTTCAGAATTACTTTTGTT
TTTGATAATCGCGACCAACTGAAACCTTTTTTTAAACTTTTTTAATTATC
TTTGTTTCCTATTCCTACTCCTAACAAAAAAATTACAAGAGGAATGCAAA
GACCCTGCTTTCCTAGAAATTGTTGGGCCTTATAAAAACGATTTATTATA
TAATGGGTGCCATCAATCCGGTAGATAACGGATCAAACAAAATCCTGATT
GGGCATCCGGCTGAAATCCCCTAAAAAAGAGACGAATTGATGGCCATAAC
TGTTTCCTGACACCTCTGGCCCGGGTCCCAAAATCCCATATGTTACATGG
ACCAAAAAAAAAAAAATGCTACCTGTTTATCAATCCTCCCCGCTCCCCAA
GAAAAACTGTAATTTTTCTATTTTGGGTGCATGAATTCCCTATTTTTTAT
ATACCCTTTTCGGAAACTAAATGAGAAAAAAAACCAAGGCCCATGCTTAG
ATTGGCGAGGTCCTGGAATCTGTCCGCAATCCGTACCCCCGCACCACCCC
CCCAAACAAATAATTCCCCCCCCGCAAAAAAATTGTTAACAAAGGGAAAC
ACGCCCCAGTAATTGATTACTACATCCAGTAAAAAAAGAAAAAAAAATTT
TCCCTTTTCTTTCTAAAATTGTCGCACATAGCAAAACAAAAAGCTTCACC
TACTTAGTTCGTTCCCCCTACGCCAAACCTTTTATCCATTTTAAAATGTG
CCTTTTGCCCCTCCACCAAAACAACCCCTCTTTTGTGTATAAAGAATATT
TCACAAAAAAAAATATTGATAGCGGCCTCCGGCGCGCGCCCCCCTCGCTA
CACCCCTCCAACACATTAATTTTCTCCAAAAAAAAAAGAATTTCCTTTTT
CTAAAACACCTGAAAAGTGCCCCTTTCCCCCCGCCGGCAACACCAACCGC
TGGCAATATAAACCCCTTACACCCACCACAAAACAAAAACAACACAAAAA
AAAAATTATTATCGAATGGGAGACGCCCGCCCCGTGAAGAGACAACACTA
AGAAAAAAAATGAGACACCCCA
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