DY258829

Overview
NameDY258829
Unique NameDY258829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length956
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig55 contig Ccv1_Contig55:36..991. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258829 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 9.786e-73
Identity = 136/235 (57.87%), Postives = 162/235 (68.94%), Query Frame = 3
Query:   48 MPEKITAENILDNLVETISDKVQKQKXXXXXXXXXXXXXXXRFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLDSCFLS 752
            MP+K   E+++ +LV+  ++ VQK K               RFNRLF RQKP+HH+LGGGKSADVLLWRNKKISASVLMGATAIWVLFEW+N+HFL++VC+AL+LGM+AQF W N SG  NRS S+VPR VLP + FA +G  V   VN  L  LQD+AC G LKQ             +GSCCNFLTVLYIGFV AHT+PVLYE++EDEVD             YKKLD+ FLS
Sbjct:    1 MPDKNIVEDVIGDLVDNFTETVQKNKHGSSFFEQEDSVSS-RFNRLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLDTGFLS 234          
BLAST of DY258829 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 7.078e-39
Identity = 85/191 (44.50%), Postives = 112/191 (58.64%), Query Frame = 3
Query:  180 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLDSCFLS 752
            RLFGR+KPVH +LGGG  ADV LWR+KK+SASVL  ATAIWVLFE + YHFL++VC  L+  + A F   N     N++P K+P   +  E F  I + +   +N+A  +L+ IA G  LK+             +G+  NFLT++YI FV  HT+P+LYEKHED+VD             Y   D   LS
Sbjct:   51 RLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLS 241          
BLAST of DY258829 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 4.588e-38
Identity = 76/168 (45.24%), Postives = 109/168 (64.88%), Query Frame = 3
Query:  180 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVD 683
            R+FGR+KPVH +LGGGK ADV LWR+KK+S +VL  ATAIWVLFE + YH L+++C   +L +   F W N   L N++  ++P   +P E F  + +++   +N+A  +L+ IA G  LK+             +G+  NFLT++YI FV  HT+P+LYEKHED+VD
Sbjct:   51 RMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVD 218          
BLAST of DY258829 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.625e-37
Identity = 74/191 (38.74%), Postives = 107/191 (56.02%), Query Frame = 3
Query:  180 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLDSCFLS 752
            RLFGR++PVH +LGGGK AD+ +W+NKK+S  VL GATA WV+FE + YH LT++C  +++ +   F W N +   N+SP K+P   +P E    + + +   +N     L++IA G  LK+             +G C NFLT+ YI  V   T+P+ Y+K+ED+VD             Y  LD   LS
Sbjct:   72 RLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLS 262          
BLAST of DY258829 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.131e-35
Identity = 68/187 (36.36%), Postives = 106/187 (56.68%), Query Frame = 3
Query:  180 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLDS 740
            RLFGR++PVH +LGGGK AD+ +W++KK+S  V  GAT  WVLFE + YH LT++C  +++ +   F W N +   ++SP K+P   +P E    + + +   +N  +  L++IA G  +K+             +G C +FLT+ YI  V   T+P+ Y+K+ED+VDS            Y  LD+
Sbjct:   68 RLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDA 254          
BLAST of DY258829 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.784e-35
Identity = 75/191 (39.27%), Postives = 105/191 (54.97%), Query Frame = 3
Query:  180 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLDSCFLS 752
            RLFGR++P+H L GGGK AD+ LWRNKK+S  VL  AT  W+LFE L Y+ LT+     +L +   F W + S   ++SP  +P   +P +V   + + +   +N    +L+DIA G  LK+             +GS CNFLT++YI  V   T+PVLYEK+ED+VD             Y + D   LS
Sbjct:   47 RLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLS 237          
BLAST of DY258829 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.635e-35
Identity = 82/228 (35.96%), Postives = 112/228 (49.12%), Query Frame = 3
Query:   69 ENILDNLVETI-----SDKVQKQKXXXXXXXXXXXXXXXRFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLD 737
            E+IL+ +VE I     S  +                   +  RLFGR+KPVH +LGGGK AD+ LWRNKK+S  VL   TA WVLFE   YH L  +C   +  + A F W N     ++S   +P   +P +    + + +   +N  L LL++IA G  +K+             IGSC NFLT+ Y   V   T+PVLYEK+ED+VD+            Y  LD
Sbjct:    9 ESILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLD 236          
BLAST of DY258829 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.438e-31
Identity = 69/191 (36.13%), Postives = 103/191 (53.93%), Query Frame = 3
Query:  180 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLDSCFLS 752
            +LF RQ+ +H + GGGK AD+LLWR  KI+A++++G + +W L E + Y+F+T++C A +  ML  F W   S   N     +P  VL    F  +  +     N+ L  L D+ACG                  IG+  NF+ +L+IGFV+  TLPV+YE +ED+VD+            YKK+D+  LS
Sbjct:   22 KLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNVLS 212          
BLAST of DY258829 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 6.641e-29
Identity = 68/191 (35.60%), Postives = 102/191 (53.40%), Query Frame = 3
Query:  180 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLDSCFLS 752
            R+FGR++P+H +LGGGK ADVLLWR+KK++  +L   T IW+LF +     LT +C   +L +L  F W   S   N+SP  +    +P +      + +   +N A   L+ IA    +K              IG+  +FL++LYI FV  HT+P+LYEK+EDE+D             Y+  ++ FLS
Sbjct:   53 RMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLW---SNALNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEIDPIAEKAVIEMKKHYQVFEAKFLS 240          
BLAST of DY258829 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.069e-22
Identity = 57/191 (29.84%), Postives = 93/191 (48.69%), Query Frame = 3
Query:  180 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLDSCFLS 752
            RL GRQ  VH  +GGGK+AD+LLWR + +S  V++ +T  W++FE+    FL++    L++ ++  F    +S   NR    +P  VL  E+  +   +    +N  L +  D+  G   +              IGS  +  T+LYIG + + T+P LY K++ +VD             YK +D   +S
Sbjct:   24 RLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVIS 214          
The following BLAST results are available for this feature:
BLAST of DY258829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RTNLH_ARATH9.786e-7357.87Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH7.078e-3944.50Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH4.588e-3845.24Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLA_ARATH6.625e-3738.74Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH2.131e-3536.36Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH2.784e-3539.27Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH3.635e-3535.96Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH2.438e-3136.13Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH6.641e-2935.60Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLP_ARATH2.069e-2229.84Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CF06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258829 ID=DY258829; Name=DY258829; organism=Citrus clementina; type=EST; length=956bp
ACTCAACAGACCCCATTTTTTTCCTTTTTTCTTGAAAGATTGGAAGAATG
CCAGAGAAAATAACAGCAGAGAACATTTTGGACAACCTTGTGGAAACCAT
TTCAGATAAGGTTCAAAAGCAGAAAGCTGTATCATTTTTTGAGGAAGAGA
CATCAAGCTCAGTCACTGCTCGTTTCAATCGGCTGTTCGGACGCCAGAAA
CCTGTCCACCATCTTTTGGGCGGTGGAAAATCTGCTGATGTTTTGTTATG
GAGGAACAAGAAGATATCAGCCAGTGTATTAATGGGTGCAACAGCAATTT
GGGTGCTCTTTGAATGGCTTAACTACCATTTTCTGACCATTGTATGCTTT
GCTTTGGTCCTTGGCATGCTTGCTCAATTTTTTTGGGTAAACATTTCGGG
CTTATTTAACAGATCACCATCAAAAGTTCCCCGCTTTGTTCTGCCTCCAG
AGGTATTTGCTAACATTGGCACAACAGTTTGTGCTAATGTTAATGAAGCT
CTGGGGCTACTTCAGGACATTGCATGTGGAGGAAAACTGAAACAACTTCT
TGTGGCTGTAGCAAGCTTGTGGGCTGCTGCTGTGATAGGGAGCTGTTGTA
ACTTTTTGACCGTTCTATATATTGGTTTTGTTGCTGCCCATACATTGCCA
GTCCTGTATGAGAAGCATGAAGATGAAGTTGACAGCTTTCTGAACAATGT
CTTCCAGCAGCTCCAGAATCAGTACAAGAAGCTTGATTCATGTTTCCTCA
GCAAAATCCCCAAGGGCAAGTTCAAAGGGAAGAAAAGCGAATAGATCGAT
TGATCAAACATTAAATTTTACATATCCCCCTGGCCATGACTAGTGATGGA
ACGTAACGACAACCTTGTCATATTATTAATGGTAATTATGGTGGGAATTA
TGTATTATTAAAGAATATTGGGCTTGGTGGAATTTAAAAAAGTCCCCAAT
ACCTAC
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