DY258893

Overview
NameDY258893
Unique NameDY258893
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1256
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14925 contig Ccv1_Contig14925:164..1419. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258893 vs. ExPASy Swiss-Prot
Match: AAPC_CENCI (Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 4.293e-85
Identity = 164/301 (54.49%), Postives = 203/301 (67.44%), Query Frame = 3
Query:  108 IVHDKDGLPRIILTEPTGSSAEVLLYGGQVVSWKNERREELLFMSSKSFWKPPKAIRGGIPVCFPQFGNLGLLEQHGFARNRFWSLDEDASPLP--PANNQSTVDLILKSTEEDIKAWPRGFELRLRISISP-GKLTLIPRVRNV--DNKAFSFMFALRNYLSVSDISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTF*LRKDGMPDSVVWNPLDKRPKLCQNMGVDGLQNMFMCGSCCIEILIALKPFKNGGAVKSFLLGPPSIGVGQFGPKK 995
            +V    GL +++L       AE+ LYGGQV SWKN+  EELLF+SSK+ +KPPKAIRGGIP+C PQFG  G LEQHGFARNRFWS+D D  PLP  PA  ++ VDLIL+  EED+K WP  FE RLR+++ P G L+L  R+RN   D + FS+ FA   Y  VSDISEVRVEGLET+DY D L  KERFTEQ DAI F+ E+D+VYL+ P+KIAIIDHEKK+TF + K+G+PD+VVWNP DK+ K  Q+ G    +NM       +E  I LKP +      +    P S   GQ  P K
Sbjct:   26 LVKTPSGLEKVVLRGARNCCAEIYLYGGQVTSWKNDNGEELLFLSSKAIFKPPKAIRGGIPICLPQFGTHGNLEQHGFARNRFWSIDNDPPPLPVNPAI-KAFVDLILRPAEEDLKIWPHSFEFRLRVALGPSGDLSLTSRIRNTNTDGRPFSYTFAYHTYFFVSDISEVRVEGLETMDYLDNLKAKERFTEQGDAIVFESEVDKVYLAAPSKIAIIDHEKKKTFVVTKEGLPDAVVWNPWDKKAKAMQDFGDAEYKNMLCVEPAAVEKPITLKPGEEWRGRIALSAVPSSYCSGQLDPLK 325          
BLAST of DY258893 vs. ExPASy Swiss-Prot
Match: YMY9_YEAST (Glucose-6-phosphate 1-epimerase OS=Saccharomyces cerevisiae GN=YMR099C PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.359e-22
Identity = 86/281 (30.60%), Postives = 127/281 (45.20%), Query Frame = 3
Query:  138 IILTEPTG--SSAEVLLYGGQVVSWKNERREELLFMSSKSFWKPPKAIRGGIPVCFPQFG------NLGLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILK---STEEDIKAWPRGFELRLRISISPGKLTLIPRVRNV-DNKAFSFMFALRNYLSVSDISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVY--LSTPTKIAIIDHEKKRTF*LRKDGMPDSVVWNP-LDKRPKLCQNMGVDGLQNMFMCGSCCIEILIALKPFKNGGA 935
            ++LT P    +S  +L YG  V SWK  + EE L++S+ +     K +RGGIP+ FP FG      +L  L QHG ARN  W         PP     TV   LK   +  E  K WP  + L L + +    L     V N   +K   F +    Y  + DI    V  L  +  +D L+ KE + ++   +TF+ E D +Y  +S    I I+D +  +   L++  +PD+VVWNP ++K   +       G Q M       +   I+L P K   A
Sbjct:   10 VVLTHPADETTSVHILKYGATVYSWKL-KSEEQLWLSTAAKLDGSKPVRGGIPLVFPVFGKNSTDEHLSKLPQHGLARNSTWEFLGQTKENPP-----TVQFGLKPEIANPELTKLWPMDYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYDQLL-KESYVDKHPVVTFNQETDVIYQNVSAERAIQIVD-KGVQIHTLKRYNLPDTVVWNPWIEKSQGMADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNA 282          
BLAST of DY258893 vs. ExPASy Swiss-Prot
Match: YEAD_ECOLI (Putative glucose-6-phosphate 1-epimerase OS=Escherichia coli (strain K12) GN=yeaD PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.246e-17
Identity = 83/248 (33.47%), Postives = 111/248 (44.76%), Query Frame = 3
Query:  123 DGLPRIILTEPTGSSAEVLLYGGQVVSWKNERREELLFMSSKSFWKPPKAIRGGIPVCFPQFGNLGL--LEQHGFARNRFWSL---DEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDISEVRVEGLETLDYFDYLMNKERFTEQADAI-TFDGEIDRVYLSTPTKIAIIDHEKKRTF*LRKDGMPDSVVWNPLDKRPKLCQNMG 848
            D L  I++  P    A   L G  ++SWK    EE+L++S+ + +K   AIRGG+PVC+P FG      L  HGFARN  W+L    EDA  +        +   L  +EE  K WP  F L     +  GK   I    + +   F    AL  Y +V DI++V V GL   D F   +N  +     D I TF    DRVYL+      I D    R   +      + V WNP    P L  +MG
Sbjct:   24 DELDLIVVDHPQ-VKASFALQGAHLLSWKPAGEEEVLWLSNNTPFKNGVAIRGGVPVCWPWFGPAAQQGLPAHGFARNLPWTLKSHHEDADGV-------ALTFELTQSEETKKFWPHDFTLLAHFRV--GKTCEIDLESHGE---FETTSALHTYFNVGDIAKVSVSGLG--DRFIDKVNDAKENVLTDGIQTFPDRTDRVYLNPQDCSVINDEALNRIIAVGHQHHLNVVGWNP---GPALSISMG 253          
The following BLAST results are available for this feature:
BLAST of DY258893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AAPC_CENCI4.293e-8554.49Putative glucose-6-phosphate 1-epimerase OS=Cenchr... [more]
YMY9_YEAST1.359e-2230.60Glucose-6-phosphate 1-epimerase OS=Saccharomyces c... [more]
YEAD_ECOLI2.246e-1733.47Putative glucose-6-phosphate 1-epimerase OS=Escher... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3DF10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258893 ID=DY258893; Name=DY258893; organism=Citrus clementina; type=EST; length=1256bp
AGTAATATTATTATCAAGAGCCAAACCTGGAGTGGAGAAAAGGGAAAGTG
AACCCATTTGTGAGCAGAATAAGGGCAAGGTTAGGGCCAACAGCTATGCC
ATTGAATATAGTTCATGATAAAGATGGATTGCCCAGAATTATTTTGACTG
AGCCAACTGGGTCATCTGCTGAGGTGCTTCTCTATGGTGGGCAAGTTGTT
TCCTGGAAGAATGAACGAAGAGAAGAACTGCTTTTTATGAGCAGCAAGTC
TTTCTGGAAGCCACCTAAAGCCATCAGGGGAGGTATACCTGTCTGCTTCC
CACAGTTTGGAAATCTTGGTTTACTGGAGCAACATGGATTCGCAAGGAAC
AGATTTTGGTCATTGGATGAAGATGCTTCTCCTCTGCCCCCAGCTAACAA
CCAGTCAACAGTGGATCTGATATTGAAGTCCACAGAAGAGGATATAAAGG
CCTGGCCACGAGGCTTTGAGTTGCGTCTCCGTATTTCTATCAGTCCTGGC
AAGCTGACTTTGATCCCTCGTGTGAGGAATGTGGATAACAAGGCTTTCTC
TTTTATGTTCGCGCTGCGTAATTACTTATCTGTATCAGATATCAGTGAAG
TGCGTGTCGAAGGCTTGGAGACTCTTGATTACTTTGATTATCTGATGAAT
AAAGAAAGGTTCACAGAGCAGGCGGATGCAATTACCTTTGATGGCGAGAT
TGACAGAGTGTATTTGAGCACCCCAACAAAGATTGCCATTATTGACCATG
AGAAGAAGAGAACCTTTTGACTGCGGAAAGATGGCATGCCAGATTCAGTT
GTGTGGAACCCCTTGGACAAAAGGCCAAAGCTCTGCCAGAATATGGGGGT
TGACGGGTTACAAAACATGTTTATGTGTGGATCCTGCTGCATTGAAATCC
TAATTGCCTTGAAACCTTTTAAAAATGGAGGGGCCGTCAAGAGCTTTCTA
CTGGGGCCTCCAAGTATTGGCGTTGGGCAATTTGGACCCAAGAAAAATTC
TCCCGTGGCTTTCCATTGATTCCTTCCCCCGGACTCCAAAAAAAATTTTT
CAAAAATTTTGGTTTTAATTTTCCTCTTTATTAATTGAAAAAATACCCCC
GTGCCCCTTGTTCTGTCCTTTGGTTATTCCTCTTTTTTTTTTTTTAACCC
CCCCGTTTTTATTGTAAAAAAAACCCAAAAACCACCCACACCATAACACA
CAAAAATAATTTCCCACCAAAAAAATTTATGTAAAACGCCACACAACCAC
AAATAA
back to top