DY259766

Overview
NameDY259766
Unique NameDY259766
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1024
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259766 vs. ExPASy Swiss-Prot
Match: STAD_SOLCO (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum commersonii PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.896e-12
Identity = 58/165 (35.15%), Postives = 69/165 (41.82%), Query Frame = 1
Query:  115 PKVEYPNWKKAHGLASDESVPDTPSKPD*P*VQTTSTCGWGDENNLKHPKHV*NGSSDSGNRHDPALQGMQDEPQGAL*ICNEIRDDDAAGLFGHPIAEEVLPIGQKKGIGEHRVSDDNSEDLTACANRGMSRFADEKAMGHISKGYPNLSGDVDLKLIEKTSQY 609
            P VE  N KK      +  V  T S P        S  GW D N L H K V      S    DPA +G +D+ +     C EI DD    L G  I EE LP  Q        V D+    LT  A    +  A+E   G +   Y  LSG VD++ IEKT QY
Sbjct:   37 PSVEDGNVKKPFSPPREVHVQVTHSMPPEKREIFDSLHGWADNNILVHLKPVEKCWQASDFLPDPASEGFEDQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQY 201          

HSP 2 Score: 24.2534 bits (51), Expect = 7.896e-12
Identity = 10/26 (38.46%), Postives = 15/26 (57.69%), Query Frame = 2
Query:  590 LRKPVSTRKGSGMAPKTKKNALHGFL 667
            + K +    GSGM P+T+ N   GF+
Sbjct:  195 IEKTIQYLIGSGMDPRTENNPYLGFI 220          
BLAST of DY259766 vs. ExPASy Swiss-Prot
Match: STAD_SIMCH (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Simmondsia chinensis PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.282e-11
Identity = 76/257 (29.57%), Postives = 100/257 (38.91%), Query Frame = 1
Query:   34 STSVPNIYKPEPVNVEKSASLTPLLGFPKVEYPNWKKAHGLASDESVPDTPSKPD*P*VQTTSTCGWGDENNLKHPKHV*NGSSDSGNRHDPALQGMQDEPQGAL*ICNEIRDDDAAGLFGHPIAEEVLPIGQKKGIGEHRVSDDNSEDLTACANRGMSRFADEKAMGHISKGYPNLSGDVDLKLIEKTSQYPKRIWNGSKNKKKRTAWIP-PTAHIDIRENLSPTTNLANMPGKQKTFTLAQY*GNIAPVAKRTTT 801
            S+ +P  Y      V  ++S    +G    E PN KK H    +  V  T S P        S  GW +EN L H K V           DPA +G  D+ +       EI D+    L G  I EE LP  Q        V D+    LT+ A    +  A+E   G +   Y  L+G VD+K IEKT QY   I +G   + +   ++         R       N A +      F LAQ  G IA   KR  T
Sbjct:   18 SSGLPRSYHLRSHRVFMASST---IGITSKEIPNAKKPHMPPREAHVQKTHSMPPQKIEIFKSLEGWAEENVLVHLKPVEKCWQPQDFLPDPASEGFMDQVKELRERTKEIPDEYLVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLTGRVDMKQIEKTIQY--LIGSGMDPRSENNPYLGFIYTSFQERATFISHGNTARLAKDHGDFQLAQVCGIIAADEKRHET 269          
The following BLAST results are available for this feature:
BLAST of DY259766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
STAD_SOLCO7.896e-1235.15Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SIMCH5.282e-1129.57Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YC06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259766 ID=DY259766; Name=DY259766; organism=Citrus clementina; type=EST; length=1024bp
TCACTTTGGCTGTGTAACCAAATACGCCTGCATTCAACTTCTGTGCCTAA
TATTTACAAACCAGAACCTGTAAATGTGGAGAAATCTGCAAGTTTGACCC
CCCTACTTGGGTTCCCGAAGGTGGAGTACCCGAATTGGAAGAAGGCGCAT
GGTCTTGCAAGTGACGAATCCGTTCCAGATACACCATCAAAACCAGATTG
ACCATAGGTTCAGACAACATCTACGTGCGGGTGGGGTGACGAGAACAACT
TGAAGCATCCAAAACATGTATAGAATGGCTCGAGTGACTCGGGGAATCGG
CATGATCCTGCCTTACAAGGAATGCAGGATGAACCCCAAGGGGCGTTATA
AATATGCAATGAAATCCGTGATGACGATGCTGCTGGATTGTTTGGACATC
CGATCGCAGAAGAAGTACTTCCTATTGGACAAAAAAAGGGGATTGGTGAG
CACAGGGTGTCAGATGATAATAGTGAAGACCTCACTGCATGTGCAAATCG
GGGCATGTCTCGTTTTGCTGATGAAAAGGCGATGGGACACATTTCCAAAG
GATATCCCAACCTATCGGGAGATGTGGACTTGAAGCTCATTGAGAAAACC
AGTCAGTACCCGAAAAGGATCTGGAATGGCTCCAAAAACAAAAAAAAACG
CACTGCATGGATTCCTCCGACGGCTCATATTGATATACGGGAAAATTTAT
CCCCCACGACAAACCTTGCAAATATGCCAGGGAAACAGAAAACCTTCACA
CTAGCCCAATATTGAGGCAACATTGCCCCGGTCGCAAAACGCACTACAAC
CCCCCTCCCCAACAACACCGGCCAAGGTTTTTGAGATTGCGCCCTCAAAC
GCACCCGCTCCGGGGTCACCTAATCAAGAGCAAACACCACACTCTCCCTC
CCCCTCCTCATTTAGCTGTTGGGCCAATCGATCACCCCTAATTTCATCGC
CTCTCATTCTACTCCTCCGCACTCGAGTAACCCTCTCCCACCTATTGTTG
TACTCTATTTATAAACTCACCCCG
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