DY259777

Overview
NameDY259777
Unique NameDY259777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length951
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259777 vs. ExPASy Swiss-Prot
Match: Y5957_ARATH (Uncharacterized protein At5g39570 OS=Arabidopsis thaliana GN=At5g39570 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.487e-44
Identity = 121/266 (45.49%), Postives = 139/266 (52.26%), Query Frame = 2
Query:  110 ITLTYGRPLPPSDETCYPSSSASDGDFDYARPKFSSHSEPSAYADEALNNEYSSYARPKXXXXXXXXXXXXXXXXXXXXXXXAYGFQPGMGRPEPYGSGRPESEYASG--------YAKRPDSQEYGSGYGKRPESE-EYGSGYGRKPDSEVHGSGYGRRPESG-ESGFGGRTESEYGGS-AYGRXPEYESG-----YGPKPEYESGYGGKPGY-----------ESGYGSKPQF*SRNGRKPEYEFG*GSRPEFEPGYGRKPEYG 826
            IT+ YGRP+PPSDETCYP SS  D DF+Y RP+F+   EPSAY DEALN EYSSY+RPK                        YG + G GR       +PESEY SG        Y +RP+ Q YGSGYG R E+E EYGSG G + + E     YGRRPESG  SG+GGR+ESEY    +YGR  E E G     YG   E E GY  KP Y           +  YG   +      RKP Y    G   E E G  RKP YG
Sbjct:   28 ITVIYGRPIPPSDETCYPLSSGVDDDFEYERPEFTQIHEPSAYGDEALNTEYSSYSRPK-PRPAFRPDSGGGGHVQGERPNPGYGSESGYGR-------KPESEYGSGYGGQTEVEYGRRPE-QSYGSGYGGRTETESEYGSGGGGRTEVE-----YGRRPESGLGSGYGGRSESEYERKPSYGRSEEQEEGYRKPSYGRSEEQEEGY-RKPSYGRSEEQEEGYRKPSYGRSEEEQEEGYRKPSY----GRSEEQEEGSYRKPSYG 274          

HSP 2 Score: 72.0182 bits (175), Expect = 5.592e-12
Identity = 55/131 (41.98%), Postives = 62/131 (47.33%), Query Frame = 2
Query:  467 SGYGKRPESEEYGSGYGR-------KPDSEVHGSGYGRRPESG---ESGFGGRTESEYGGSAYGRXPEYESGYGPKPEYESGYGGKPGYESGYGSKPQF*SRNGRKPEYEFG*GSRPEFEPGYGRKPEYGL 829
            S YG    + EY S Y R       +PDS   G   G RP  G   ESG+G + ESEYG S YG   E E G  P+  Y SGYGG+   ES YGS                G G R E E  YGR+PE GL
Sbjct:   68 SAYGDEALNTEYSS-YSRPKPRPAFRPDSGGGGHVQGERPNPGYGSESGYGRKPESEYG-SGYGGQTEVEYGRRPEQSYGSGYGGRTETESEYGS----------------GGGGRTEVE--YGRRPESGL 178          
BLAST of DY259777 vs. ExPASy Swiss-Prot
Match: IF2_CLOPH (Translation initiation factor IF-2 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=infB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.074e-11
Identity = 49/160 (30.63%), Postives = 74/160 (46.25%), Query Frame = 2
Query:  395 YGSGRPESEYASGYAKRPDSQEYGSGYGKRPESE-EYGS---GYGRKPDSEVHGSG-YGRRPESGESGFGGRTESEYGGSAYGRXPEYESGYGPKPEYESGYGGK------------PGYESGYGSKPQF*SRNG-RKPEYEFG*GSRPEFEPGYGRKPE 820
            YG  RP+ + + G  +RP  Q     YG RP+ +  YG    G G   D    G G YG R   G+  +G R + +  GS   R P+ +  YG +P+ +  YG +            P  +  YG +PQ     G R+P+ + G G RP+ +  YG +P+
Sbjct:  277 YGDRRPQGQGSYG-DRRPQGQ---GSYGDRPQGQGSYGDRPQGQGSYGDRRPQGQGSYGDRRPQGQGSYGDRPQGQ--GSYGDRRPQGQGSYGDRPQGQGNYGDRRPGGQGSYGDRRPQGQGSYGDRPQGQGNFGDRRPQGQGGYGGRPQGQGSYGGRPQ 430          
The following BLAST results are available for this feature:
BLAST of DY259777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y5957_ARATH2.487e-4445.49Uncharacterized protein At5g39570 OS=Arabidopsis t... [more]
IF2_CLOPH8.074e-1130.63Translation initiation factor IF-2 OS=Clostridium ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YC17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259777 ID=DY259777; Name=DY259777; organism=Citrus clementina; type=EST; length=951bp
ACAAAATCGCGTTCGGAACAGAGAAACAATGCCGTACTACGCTGACAATG
ACGATGACGTTACTGATTTCGACGATTACGATCCAACACCCTACGATGGT
GGATACGACATCACTTTGACTTACGGCCGTCCTCTGCCACCGTCCGATGA
GACTTGTTACCCATCATCGTCGGCGTCAGATGGTGACTTCGACTACGCTC
GTCCCAAGTTCTCGTCGCACTCGGAGCCTTCAGCCTACGCTGACGAAGCT
CTCAATAACGAGTACAGCTCCTACGCCCGACCAAAGCCTCGTCCCGGTTT
CGTACCCGGGTCAGGGGGTGGGTCGGGTTATGGAGGAAGGCCCCAGCCGC
AGCCGGCTTATGGGTTTCAGCCTGGAATGGGAAGGCCCGAACCTTATGGG
TCGGGGAGGCCCGAATCTGAATATGCTTCTGGGTATGCGAAGAGGCCTGA
TTCGCAGGAATATGGATCTGGGTACGGAAAGAGACCCGAGTCGGAGGAAT
ATGGATCTGGGTACGGCAGGAAACCTGATTCCGAGGTGCATGGCTCTGGA
TATGGGCGGAGACCGGAGTCGGGTGAATCCGGATTTGGTGGTAGGACTGA
GTCCGAGTATGGAGGATCAGCGTATGGACGANAACCCGAATATGAGTCCG
GTTATGGCCCGAAACCGGAATATGAATCTGGCTATGGTGGAAAACCCGGG
TACGAGTCTGGATATGGAAGCAAACCCCAATTTTGATCCCGAAATGGGAG
GAAACCCGAATACGAGTTCGGGTAAGGCAGCCGGCCGGAATTTGAACCCG
GTTATGGGAGGAAACCCGAATATGGACTTCCGGCACCGGAGTAACCAGGA
TGATGGGCCCGGGTATGGAAGTAACCCCCCTTGATTCCGGCTATGGGCCT
AAACCCGATTTCGGATCCGGAATTGGCCCCCAACCCCAATATGAACCTGG
G
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