DY259827

Overview
NameDY259827
Unique NameDY259827
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1053
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1323 contig Ccv1_Contig1323:1..1053. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259827 vs. ExPASy Swiss-Prot
Match: ATG8F_ARATH (Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.932e-48
Identity = 97/121 (80.17%), Postives = 102/121 (84.30%), Query Frame = 3
Query:   81 MAKSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIP 443
            MAKS FKQEHDL             YPDRIPVIVEKAE+SDIP IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP GA+MS++YEEKKD+DGFLYVTYSGENTFG   P
Sbjct:    1 MAKSSFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAEKSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFGFGSP 121          
BLAST of DY259827 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSJ (Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 3.410e-45
Identity = 92/117 (78.63%), Postives = 97/117 (82.91%), Query Frame = 3
Query:   81 MAKSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 431
            MA+S FK EH L             YPDRIPVIVEKAERSDIP+IDKKKYLVPADLTVGQFVYV+RKRIKLSAEKAIFIFV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFG
Sbjct:    1 MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of DY259827 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSI (Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 3.410e-45
Identity = 92/117 (78.63%), Postives = 97/117 (82.91%), Query Frame = 3
Query:   81 MAKSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 431
            MA+S FK EH L             YPDRIPVIVEKAERSDIP+IDKKKYLVPADLTVGQFVYV+RKRIKLSAEKAIFIFV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFG
Sbjct:    1 MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of DY259827 vs. ExPASy Swiss-Prot
Match: ATG8C_ARATH (Autophagy-related protein 8c OS=Arabidopsis thaliana GN=ATG8C PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.692e-44
Identity = 89/117 (76.07%), Postives = 96/117 (82.05%), Query Frame = 3
Query:   81 MAKSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 431
            MA S FK EH L             YPDRIPVIVE+AERSD+PNIDKKKYLVPADLTVGQFVYV+RKRIKLSAEKAIF+FV N LPPT A+MSAIY+E KDEDGFLY+TYSGENTFG
Sbjct:    1 MANSSFKLEHPLERRQIESSRIREKYPDRIPVIVERAERSDVPNIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTAAMMSAIYDENKDEDGFLYMTYSGENTFG 117          
BLAST of DY259827 vs. ExPASy Swiss-Prot
Match: ATG8G_ARATH (Autophagy-related protein 8g OS=Arabidopsis thaliana GN=ATG8G PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.887e-44
Identity = 88/118 (74.58%), Postives = 98/118 (83.05%), Query Frame = 3
Query:   81 MAKSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 434
            M+   F+Q+HD              Y DR+PVIVEK+E+SDIPNIDKKKYLVPADLTVGQFVYVIRKRI+LSAEKAIFIFVDNVLPPTGA+MS IY+E K+EDGFLYVTYSGENTFGS
Sbjct:    1 MSNVSFRQDHDFEKRKAEALRIREKYSDRVPVIVEKSEKSDIPNIDKKKYLVPADLTVGQFVYVIRKRIQLSAEKAIFIFVDNVLPPTGAMMSTIYDENKEEDGFLYVTYSGENTFGS 118          
BLAST of DY259827 vs. ExPASy Swiss-Prot
Match: ATG8E_ARATH (Autophagy-related protein 8e OS=Arabidopsis thaliana GN=ATG8E PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.770e-44
Identity = 86/115 (74.78%), Postives = 97/115 (84.35%), Query Frame = 3
Query:   90 SYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 434
            S FK + D              YPDRIPVIVEKAE+S++PNIDKKKYLVP+DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG +MS++YE+KKDEDGFLY+TYSGENTFG+
Sbjct:    5 SIFKMDDDFEKRKAEAGRIREKYPDRIPVIVEKAEKSEVPNIDKKKYLVPSDLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLYITYSGENTFGA 119          
BLAST of DY259827 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSJ (Autophagy-related protein 8B OS=Oryza sativa subsp. japonica GN=ATG8B PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 1.097e-43
Identity = 90/117 (76.92%), Postives = 95/117 (81.20%), Query Frame = 3
Query:   81 MAKSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 431
            MAKS FK +H L             Y DRIPVIVEKAERSDIP+IDKKKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFG
Sbjct:    1 MAKSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of DY259827 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSI (Autophagy-related protein 8B OS=Oryza sativa subsp. indica GN=ATG8B PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.097e-43
Identity = 90/117 (76.92%), Postives = 95/117 (81.20%), Query Frame = 3
Query:   81 MAKSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 431
            MAKS FK +H L             Y DRIPVIVEKAERSDIP+IDKKKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFG
Sbjct:    1 MAKSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of DY259827 vs. ExPASy Swiss-Prot
Match: ATG8D_ARATH (Autophagy-related protein 8d OS=Arabidopsis thaliana GN=ATG8D PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 4.169e-43
Identity = 87/117 (74.36%), Postives = 96/117 (82.05%), Query Frame = 3
Query:   81 MAKSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 431
            MA S FK EH L             YPDRIPVIVE+AE+SD+P+ID+KKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV N+LPPT AIMSAIYEE KDEDGFLY++YSGENTFG
Sbjct:    1 MAISSFKHEHPLEKRQAEAARIREKYPDRIPVIVERAEKSDVPDIDRKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLYMSYSGENTFG 117          
BLAST of DY259827 vs. ExPASy Swiss-Prot
Match: ATG8A_ARATH (Autophagy-related protein 8a OS=Arabidopsis thaliana GN=ATG8A PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 2.069e-42
Identity = 87/118 (73.73%), Postives = 95/118 (80.51%), Query Frame = 3
Query:   81 MAKSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 434
            MAKS FK  + L             YPDRIPVIVEKA +SD+P+IDKKKYLVPADLTVGQFVYV+RKRIKL AEKAIF+FV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFGS
Sbjct:    1 MAKSSFKISNPLEARMSESSRIREKYPDRIPVIVEKAGQSDVPDIDKKKYLVPADLTVGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFGS 118          
The following BLAST results are available for this feature:
BLAST of DY259827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8F_ARATH1.932e-4880.17Autophagy-related protein 8f OS=Arabidopsis thalia... [more]
ATG8C_ORYSJ3.410e-4578.63Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8C_ORYSI3.410e-4578.63Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8C_ARATH1.692e-4476.07Autophagy-related protein 8c OS=Arabidopsis thalia... [more]
ATG8G_ARATH2.887e-4474.58Autophagy-related protein 8g OS=Arabidopsis thalia... [more]
ATG8E_ARATH3.770e-4474.78Autophagy-related protein 8e OS=Arabidopsis thalia... [more]
ATG8B_ORYSJ1.097e-4376.92Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8B_ORYSI1.097e-4376.92Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8D_ARATH4.169e-4374.36Autophagy-related protein 8d OS=Arabidopsis thalia... [more]
ATG8A_ARATH2.069e-4273.73Autophagy-related protein 8a OS=Arabidopsis thalia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YF04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259827 ID=DY259827; Name=DY259827; organism=Citrus clementina; type=EST; length=1053bp
GTTTTGATCATTAAAGTTCTCTCGTTCTTTTCTGTTTTTTTTTCCTCTGG
CTTCTTCGCTTCGACTCTTCACAAGGAGGAATGGCAAAGAGTTACTTCAA
GCAAGAGCATGATCTTGAGAAGAGACGCGCCGAGGCTGCAAGGATTAGGG
AGAAGTACCCTGACAGGATTCCGGTGATTGTGGAGAAGGCAGAGAGAAGT
GACATACCAAATATAGATAAGAAGAAGTATCTTGTTCCAGCTGACCTGAC
TGTAGGACAATTTGTCTATGTCATCCGTAAAAGGATCAAACTGAGTGCTG
AAAAGGCGATATTTATTTTTGTGGATAATGTGCTCCCACCTACAGGTGCA
ATTATGTCTGCCATATACGAAGAGAAAAAGGATGAAGATGGTTTTCTTTA
TGTGACTTACAGTGGGGAGAACACATTTGGAAGCCACATCCCAGTTTAGC
CTTGTGATTATCAATCTGCTCATTGTGTGGTTTCTTGTGCGACCACATTT
TTATCTCAATTGTCATCCTTGCCTTCCGCCGAATATTCCTTTATCGGGCA
TATTTTACATTTTATAAAGACCTTTGCCAGTGATAAATGTACAAGTTACC
TAATTGTATATCAGTTCTTACACGGCAACCACGTCCCATTTCCTCCCGGC
CCTCCCAATTTGAAGGTACTTTTTTTCGGACCGGGTATATAGCTGCCAAT
TCCAATCAATAATTCTCTCCTACCCACCAATCTCCACCTTGAACCCCGCA
TATTCCACCCGCACCCTCCCCCCCTCCCACCCTCTCAATTCTCTCCTCAC
CCCGTTTTATACCATCTACCAATATCAACCCCACTAACATAATCTTATCA
CTCCTCACACACCAACACCTTCCCTATCTTTGGCTGACATCCGTACCTAT
CCACACACCGCTCAACCACCCCCACCTACAACACACCCAATCAAAACCCT
AACCACATCAAGCTACAGAACTACCCTAATACACAAACTCCTCCAACCAT
ACATCAACTACAACTACCACCTCCCGACAACCACACTCAACTCTAACCAC
CCT
back to top