DY259878

Overview
NameDY259878
Unique NameDY259878
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1188
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig39 contig Ccv1_Contig39:433..1620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY259878 vs. ExPASy Swiss-Prot
Match: Y2165_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g16250 OS=Arabidopsis thaliana GN=At2g16250 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 8.999e-45
Identity = 102/206 (49.51%), Postives = 136/206 (66.02%), Query Frame = 2 
Query:    2 SDASISGSSVATCAYDVYCFGKVLLEVVTGKLGISKSDDATTREWLEHTLPHITLHDKEMLTKIIDPSLILDEDLLEEVWAMAIVARSCLDPKPAKRPPMKYILKALENPFKVVRQE---XXXXXXXXXXXXXXXXXXXXXGSWRQSSSDVATV---AHTR-----EGISGLKQLGRVLS---HDSGGIEHSSSNKRSSNEIFPEP 577
            S+ S SG + A C+YDVYCFGKVLLE+VTGKLGIS  D+A  +E++E  LP+I+ ++KE++TKI+DPSL++DEDLLEEVWAMAI+A+SCL+PKP +RP M++I+ ALENP KVVR++                        GSWRQS+SDV  V   A T       G +GL+  G   S   +++     SSS +R S+EI PEP
Sbjct:  700 SEPSSSGVTNAICSYDVYCFGKVLLELVTGKLGISSPDNALAKEYMEEALPYISTNEKELVTKILDPSLMVDEDLLEEVWAMAIIAKSCLNPKPTRRPLMRHIVNALENPLKVVREDTNSGSGSSRLRTNSSRGSWNAAIFGSWRQSASDVTAVQAGATTSGGGGGGGGNGLRNSGSQGSSGRNNNNNGNSSSSRRRQSSEIVPEP 905
The following BLAST results are available for this feature:
BLAST of DY259878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y2165_ARATH8.999e-4549.51Probable LRR receptor-like serine/threonine-protei... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YH20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259878 ID=DY259878; Name=DY259878; organism=Citrus clementina; type=EST; length=1188bp
CTCTGATGCAAGCATTTCAGGCTCGTCCGTGGCAACTTGTGCCTACGATG
TGTACTGCTTTGGAAAAGTCCTACTTGAGGTTGTAACTGGCAAGCTTGGT
ATTAGCAAATCAGATGATGCTACTACACGAGAGTGGTTGGAACACACACT
ACCTCACATCACTTTACACGACAAGGAAATGTTGACCAAGATCATCGACC
CATCTCTGATTCTAGATGAGGATCTACTGGAAGAAGTATGGGCCATGGCA
ATTGTAGCCAGATCATGCCTTGACCCTAAGCCTGCCAAACGACCGCCAAT
GAAATATATTCTAAAAGCATTGGAAAACCCTTTTAAAGTGGTGAGACAGG
AGAGTTTCAGCTCTGCGAGGCTGCGCACAACTTCATCTAGGCGATCTTGG
AGTACTGCTTTCTTTGGTAGTTGGCGACAGAGCTCATCAGATGTTGCAAC
TGTTGCTCACACAAGAGAAGGTATCAGTGGTCTAAAACAGTTGGGAAGAG
TACTTTCTCACGATAGTGGTGGAATTGAGCACTCATCTTCGAATAAAAGG
TCATCAAATGAAATATTCCCTGAACCGTTAGAAATGGAAGATATGGAGAG
GCAAGACGAACATTAGTTCGAAGTGTGCGCTTGTGATTATCTTTAAATGA
TTTTGTGGCTTCCCATCTGAGCGCCTGCTCGATAGCATTTCTTGACCCCC
GTCTTTTATATTTCCCCCTCCCTGGGGTCCAAAACAATTTTTTGAAAACA
ATTTTTTGACCCCCTGATGATGAAGATCCCGTGGAACCTTAAAATGTACC
AGGCTAAAAAAGGGGGTTGAAAACCCCTTCTGTAAAAAAAAGTAAACCCA
AAAAGGTTTTTCCTTTTTTTATACCATTTCCTTTTCGGTTTGGGAGCTTG
TTCCTTGTTAAAAAACAAACTGCCTTTTTTTCTCCCGTAAAAAAAAAAAA
AAAAAAAAAAACCCCCATATTTTTCTGGGAAATATTTGGTATTATAAAAA
AAACAGTTACCTTTATTTTTTTGTTCGTCACAAAAAGGGCCCCCCACACC
CACTAAAAAAAAAAATACCTATTTCTCCCCCCCTCCCCGCGTCAACTCTC
CCCTAAATAGGGAGGTGCTTATTAACAAGCGACTTTTAGTCTTCTTCCTC
CCGGCCAGCCTCCCATCCACCCCCCTCCCCTCTTACAC
back to top