DY259883

Overview
NameDY259883
Unique NameDY259883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length929
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH61_MAIZE (Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.281e-21
Identity = 57/106 (53.77%), Postives = 74/106 (69.81%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPL 569
            D R+G  MA+DA+V NL   A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  +AD  T  + EL++  GM LDRGY+SPYFITN KT++C L DPL
Sbjct:  148 DLRRGISMAVDAVVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIADGNTLYN-ELEVVEGMKLDRGYISPYFITNSKTQKCELEDPL 252          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH61_CUCMA (Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.281e-21
Identity = 56/106 (52.83%), Postives = 75/106 (70.75%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPL 569
            D R+G  MA+D++V NL S A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  ++D KT  + EL++  GM LDRGY+SPYFITN K ++C L DPL
Sbjct:  146 DLRRGISMAVDSVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTMDN-ELEVVEGMKLDRGYISPYFITNQKNQKCELDDPL 250          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH60A_ARATH (Chaperonin CPN60, mitochondrial OS=Arabidopsis thaliana GN=CPN60 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.673e-21
Identity = 58/106 (54.72%), Postives = 74/106 (69.81%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPL 569
            D R+G  MA+DA+V NL S A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  + D KT  + EL++  GM LDRGY SPYFITN KT++C L DPL
Sbjct:  145 DLRRGISMAVDAVVTNLKSKARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIQDGKTLFN-ELEVVEGMKLDRGYTSPYFITNQKTQKCELDDPL 249          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH62_CUCMA (Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.727e-21
Identity = 56/106 (52.83%), Postives = 75/106 (70.75%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPL 569
            D R+G  MA+D++V NL S A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  ++D KT  + EL++  GM LDRGY+SPYFITN K ++C L DPL
Sbjct:  146 DLRRGISMAVDSVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTLFN-ELEVVEGMKLDRGYISPYFITNQKNQKCELDDPL 250          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH60B_ARATH (Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.134e-21
Identity = 55/106 (51.89%), Postives = 74/106 (69.81%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPL 569
            D R+G ++A+D +V NL S A+ I++ E+IA  GT +ANGDR IGELIAKA E      +  + D KT  + EL++  GM +DRGY+SPYFITN KT++C L DPL
Sbjct:  146 DLRRGIKLAVDTVVTNLQSRARMISTSEEIAQVGTISANGDREIGELIAKAMETVGKEGVITIQDGKTLFN-ELEVVEGMKIDRGYISPYFITNPKTQKCELEDPL 250          

HSP 2 Score: 21.1718 bits (43), Expect = 4.134e-21
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  559 EIPYIMILEKKVSN 600
            E P I+I EKK+SN
Sbjct:  247 EDPLILIHEKKISN 260          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH62_MAIZE (Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.868e-21
Identity = 56/106 (52.83%), Postives = 73/106 (68.87%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPL 569
            D R+G  MA+DA+V NL   A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  +AD  T  + EL++  GM LDRGY+SPYFITN K ++C L DPL
Sbjct:  148 DLRRGISMAVDAVVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIADGNTLYN-ELEVVEGMKLDRGYISPYFITNSKAQKCELEDPL 252          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH60C_ARATH (Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 9.501e-17
Identity = 51/108 (47.22%), Postives = 70/108 (64.81%), Query Frame = 3
Query:  246 VPDQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPL 569
            V D R G  MAI A+V +L S A  I++ E+I    T +ANG+R IGELIA+A EK     +  +AD  T  + EL++  GM L RGY+SPYFIT+ KT++C L +P+
Sbjct:  143 VMDLRVGINMAIAAVVSDLKSRAVMISTPEEITQVATISANGEREIGELIARAMEKVGKEGVITVADGNTLDN-ELEVVEGMKLARGYISPYFITDEKTQKCELENPI 249          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH602_RHIEC (60 kDa chaperonin 2 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.318e-16
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G  +A+DA+VG L + A+ I++  +IA  GT +ANGD  IG  +A+A EK     +  + + KT  + EL++  GM  DRGYLSPYF+TN       L DP
Sbjct:  115 DLKRGIDLAVDAVVGELKANARKISNNSEIAQVGTISANGDAEIGRYLAEAMEKVGNEGVITVEEAKTAET-ELEVVEGMQFDRGYLSPYFVTNQDKMRVELEDP 218          

HSP 2 Score: 23.8682 bits (50), Expect = 3.318e-16
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:  541 RKNVFYEIPYIMILEKKVSN 600
            +  V  E PYI+I EKK+SN
Sbjct:  210 KMRVELEDPYILIHEKKLSN 229          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH602_AZOC5 (60 kDa chaperonin 2 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=groL2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.230e-15
Identity = 41/105 (39.05%), Postives = 65/105 (61.90%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G  +A+DA+V +L + A+ +TS  +IA  GT +ANGD  +G+ +A+A +K     +  + + KT  + EL++  GM  DRGYLSPYF+TN +       DP
Sbjct:  115 DLKRGIDLAVDAIVKDLAAKAKKVTSNAEIAQVGTISANGDADVGKFLAEAMQKVGNEGVITVEEAKTAET-ELEVVEGMQFDRGYLSPYFVTNAEKMRVEFEDP 218          

HSP 2 Score: 25.409 bits (54), Expect = 1.230e-15
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  541 RKNVFYEIPYIMILEKKVSN 600
            +  V +E PYI+I EKK+SN
Sbjct:  210 KMRVEFEDPYILIHEKKLSN 229          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH60_BRANA (Chaperonin CPN60, mitochondrial OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.596e-15
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIA--KAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPL 569
            D R+G ++A+D +V  L S A+ I++ E+IA  GT +ANGDR   EL+   KA E      +  + D KT  + EL++  GM +DRGY+SPYFITN K ++C L DPL
Sbjct:  149 DLRRGIKLAVDTVVTKLKSRARMISTSEEIAQVGTISANGDR---ELVTDCKAMESVGKEGVITIQDGKTLFN-ELEVVEGMKIDRGYISPYFITNQKNQKCELEDPL 252          

HSP 2 Score: 21.1718 bits (43), Expect = 1.596e-15
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  559 EIPYIMILEKKVSN 600
            E P I+I EKK+SN
Sbjct:  249 EDPLILIHEKKISN 262          
The following BLAST results are available for this feature:
BLAST of DY259883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 296
Match NameE-valueIdentityDescription
CH61_MAIZE1.281e-2153.77Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=C... [more]
CH61_CUCMA1.281e-2152.83Chaperonin CPN60-1, mitochondrial OS=Cucurbita max... [more]
CH60A_ARATH1.673e-2154.72Chaperonin CPN60, mitochondrial OS=Arabidopsis tha... [more]
CH62_CUCMA3.727e-2152.83Chaperonin CPN60-2, mitochondrial OS=Cucurbita max... [more]
CH60B_ARATH4.134e-2151.89Chaperonin CPN60-like 1, mitochondrial OS=Arabidop... [more]
CH62_MAIZE4.868e-2152.83Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=C... [more]
CH60C_ARATH9.501e-1747.22Chaperonin CPN60-like 2, mitochondrial OS=Arabidop... [more]
CH602_RHIEC3.318e-1641.9060 kDa chaperonin 2 OS=Rhizobium etli (strain CFN ... [more]
CH602_AZOC51.230e-1539.0560 kDa chaperonin 2 OS=Azorhizobium caulinodans (s... [more]
CH60_BRANA1.596e-1545.37Chaperonin CPN60, mitochondrial OS=Brassica napus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YI01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259883 ID=DY259883; Name=DY259883; organism=Citrus clementina; type=EST; length=929bp
TTCTGTGTCATGTTCATTTAACTCGGAGCAGACAGTATACCGCGGCGGAA
GTCACTAAAAGATTTTTGGATTGTGAAACATCTTCTGGATTTTCTTAATT
AAGAAATTAGATTTGCTGTGAATGGGAATGGAGTTAATTAATGGATACAG
ATCATCTGATCAAATTCAATTGACATCTATCTTCTGTCTGCAGGCACCAA
TTCTAAAGTTAAAAGGGAGAATTTTATATGCGGGAGGATGCGGAAGTGCC
AGACCAAAGACAAGGGGCTAGAATGGCAATTGATGCACTTGTGGGAAATT
TATACAGCACAGCACAACCCATCACATCATTCGAACAAATAGCCCTGTTT
GGAACGGCTGCAGCAAATGGTGACAGAGTGATTGGCGAGCTCATAGCCAA
GGCTTTTGAGAAAGGTTGGGGAAACAATCTTCATGTGTTAGCTGATCGGA
AAACACCACCCAGTATTGAACTTCAGTTGTATTGGGGAATGACCCTAGAC
AGGGGCTATTTGTCACCTTACTTCATCACCAATCATAAGACGAAAGAATG
TGTTTTACGAGATCCCTTATATCATGATCCTTGAGAAAAAGGTTTCAAAC
TGCGTTCTTCTTTGACTTATTGGCAGAGATTGAACCATTTAGAAAATATA
ATGGCACAAATGTACTGATCATTGCGAAAAAATTGAAAAATGACCTCCTA
ACAAGTCTGGTCCTAAATGGAAAGTCCTACAGACAACAAAGGGCTGGGTC
CAACAACCATCTGGAATTTGGAAAAACTACGAAGGCCAATCCTTTGGGAA
CATAGTCAAATTCCCTTAAGGGGACCGTCAGGGCCAGGAAACAATTTTTT
CACCGCCCCCCCCCGGCCCCCCCCTCCCAAAACCCCCGCCATCTCACACC
ACCGAACGTGTTCCTCCTTTTTGGTACGC
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