DY259929

Overview
NameDY259929
Unique NameDY259929
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1047
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259929 vs. ExPASy Swiss-Prot
Match: AB34G_ARATH (ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.176e-39
Identity = 57/118 (48.31%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:  487 VRGVFMPRVLTALRCVRGAGKTTLMDVLA*TETG*YSGGDLSISGYHENRKTFARVSDYCEQTDIHSPYSTLDEXXXXXXXXXXXXNVDAXXXXXXXXXXXXXVDHKSLDESTVGPPG 840
            V G F P VLTAL  V GAGKTTLMDVLA  +TG Y  G ++ISGY +N+ TFARVS YCEQ DIHSP+ T+ E            ++D              V+ K L  S VG PG
Sbjct:  883 VGGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYVEGSINISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSADIDTKTREMFVEEVMELVELKPLRNSIVGLPG 1000

HSP 2 Score: 74.7146 bits (182), Expect = 5.176e-39
Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = 3 
Query:    3 GHTSLLVKEFPAGTWDAQNSDPRTNPPTIGNVLLKIKGFSTESKWYCIGVGSRTGFSYRIDFLFSAALAYVNPIGDSYST 242
            G T+L++ EF    W + N+D R N  T+G VLLK +GF TE  W+ I +G+  GF+   +F +  AL Y+NP+G+S +T
Sbjct:  728 GQTALVINEFLDERWGSPNNDTRINAKTVGEVLLKSRGFFTEPYWFWICIGALLGFTVLFNFCYIIALMYLNPLGNSKAT 807

HSP 3 Score: 31.5722 bits (70), Expect = 5.176e-39
Identity = 14/26 (53.85%), Postives = 20/26 (76.92%), Query Frame = 2 
Query:  362 GMILPFQPPFT*HSDNMTYFVDMPAD 439
            GM+LPFQP  +   +N+ Y+VDMPA+
Sbjct:  842 GMVLPFQP-LSLAFNNVNYYVDMPAE 866
[Close]
BLAST of DY259929 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.797e-37
Identity = 57/118 (48.31%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:  487 VRGVFMPRVLTALRCVRGAGKTTLMDVLA*TETG*YSGGDLSISGYHENRKTFARVSDYCEQTDIHSPYSTLDEXXXXXXXXXXXXNVDAXXXXXXXXXXXXXVDHKSLDESTVGPPG 840
            V G F P +LTAL  V GAGKTTLMDVLA  +TG Y  G +SISGY +N+ TFARVS YCEQ DIHSP+ T+ E            ++D              V+ K L  S VG PG
Sbjct:  884 VGGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQTTFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSTDIDIKTRELFVEEVMELVELKPLRNSIVGLPG 1001

HSP 2 Score: 68.5514 bits (166), Expect = 5.797e-37
Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = 3 
Query:    3 GHTSLLVKEFPAGTWDAQNSDPRTNPPTIGNVLLKIKGFSTESKWYCIGVGSRTGFSYRIDFLFSAALAYVNPIGDSYSTGLN*YG*KLRASGHQTKCMHMAMRSSS 323
            G T++++ EF    W + N D R N  T+G VLLK +GF TE  W+ I + +  GFS   +  +  AL Y+NP+G+S +T +     K +     T+   + + SSS
Sbjct:  730 GQTAIVMNEFLDERWSSPNYDTRINAKTVGEVLLKSRGFFTEPYWFWICIVALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGKDKQKGENRGTEGSVVELNSSS 836

HSP 3 Score: 30.4166 bits (67), Expect = 5.797e-37
Identity = 13/26 (50.00%), Postives = 20/26 (76.92%), Query Frame = 2 
Query:  362 GMILPFQPPFT*HSDNMTYFVDMPAD 439
            GM+LPFQ P +   +N+ Y+VDMP++
Sbjct:  843 GMVLPFQ-PLSLAFNNVNYYVDMPSE 867
[Close]
BLAST of DY259929 vs. ExPASy Swiss-Prot
Match: PDR13_ORYSJ (Pleiotropic drug resistance protein 13 OS=Oryza sativa subsp. japonica GN=PDR13 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.291e-25
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:  487 VRGVFMPRVLTALRCVRGAGKTTLMDVLA*TETG*YSGGDLSISGYHENRKTFARVSDYCEQTDIHSPYSTLDE 708
            V G+F PRVLTAL    G+GKTTLMDVLA  +TG Y  GD+ ISG+ + ++TFAR++ Y EQ DIHSP  T++E
Sbjct:  869 VSGIFRPRVLTALVGASGSGKTTLMDVLAGRKTGGYIEGDIRISGHKKEQRTFARIAGYVEQNDIHSPQVTVEE 942

HSP 2 Score: 40.4318 bits (93), Expect = 1.291e-25
Identity = 21/68 (30.88%), Postives = 33/68 (48.53%), Query Frame = 3 
Query:   21 VKEFPAGTWDAQNSDPRTNPPTIGNVLLKIKGFSTESKWYCIGVGSRTGFSYRIDFLFSAALAYVNPI 224
            V EF A  W   +        T+G  +L      T+  W+ IGVG    +S   + +F+ ALA++NP+
Sbjct:  715 VNEFSASRWSKVSVSGNM---TVGTNILISHSLPTDDHWFWIGVGVLLAYSIFFNIMFTLALAFLNPL 779

HSP 3 Score: 31.187 bits (69), Expect = 1.291e-25
Identity = 16/35 (45.71%), Postives = 22/35 (62.86%), Query Frame = 2 
Query:  335 GCSKCN*LVGMILPFQPPFT*HSDNMTYFVDMPAD 439
            G ++C    GMILPFQ P T    N+ Y+V+MP +
Sbjct:  819 GQTECKSKKGMILPFQ-PLTMTFHNVNYYVNMPKE 852
[Close]
BLAST of DY259929 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.068e-23
Identity = 57/122 (46.72%), Postives = 70/122 (57.38%), Query Frame = 1 
Query:  487 VRGVFMPRVLTALRCVRGAGKTTLMDVLA*TETG*YSGGDLSISGYHENRKTFARVSDYCEQTDIHSPYSTLDEXXXXXXXXXXXXNVDAXXXXXXXXXXXXXVDHKSLDESTVGPPGNIAL 852
            V G F P VLTAL  V GAGKTTLMDVLA  +TG Y  G+++ISGY +N++TFAR+S YCEQTDIHSP+ T+ E             VD              V+   L ++ VG PG   L
Sbjct:  856 VNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLPGESGL 977

HSP 2 Score: 29.261 bits (64), Expect = 7.068e-23
Identity = 15/29 (51.72%), Postives = 19/29 (65.52%), Query Frame = 2 
Query:  362 GMILPFQPPFT*HS---DNMTYFVDMPAD 439
            GM+LPF+P    HS   DN+ Y VDMP +
Sbjct:  815 GMVLPFEP----HSITFDNVVYSVDMPQE 839
[Close]
BLAST of DY259929 vs. ExPASy Swiss-Prot
Match: AB29G_ARATH (ABC transporter G family member 29 OS=Arabidopsis thaliana GN=ABCG29 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.435e-22
Identity = 55/118 (46.61%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:  487 VRGVFMPRVLTALRCVRGAGKTTLMDVLA*TETG*YSGGDLSISGYHENRKTFARVSDYCEQTDIHSPYSTLDEXXXXXXXXXXXXNVDAXXXXXXXXXXXXXVDHKSLDESTVGPPG 840
            V GVF P VLTAL  V GAGKTTLMDVLA  +TG Y  GD+ ISG+ + ++TFAR+S YCEQ DIHSP  T+ E             V               V+ +SL ++ VG PG
Sbjct:  845 VTGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKRQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLPKEVTKYEKMRFVDEVMELVELESLKDAVVGLPG 962

HSP 2 Score: 31.187 bits (69), Expect = 2.435e-22
Identity = 14/26 (53.85%), Postives = 18/26 (69.23%), Query Frame = 2 
Query:  362 GMILPFQPPFT*HSDNMTYFVDMPAD 439
            GM+LPF P  T   DN+ Y+VDMP +
Sbjct:  804 GMVLPFTP-LTMSFDNVNYYVDMPKE 828

HSP 3 Score: 20.4014 bits (41), Expect = 2.435e-22
Identity = 8/15 (53.33%), Postives = 10/15 (66.67%), Query Frame = 3 
Query:  897 VATPSNFLREEPTTG 941
            VA PS    +EPT+G
Sbjct:  981 VANPSIIFMDEPTSG 995
[Close]
BLAST of DY259929 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.911e-22
Identity = 57/118 (48.31%), Postives = 69/118 (58.47%), Query Frame = 1 
Query:  487 VRGVFMPRVLTALRCVRGAGKTTLMDVLA*TETG*YSGGDLSISGYHENRKTFARVSDYCEQTDIHSPYSTLDEXXXXXXXXXXXXNVDAXXXXXXXXXXXXXVDHKSLDESTVGPPG 840
            V G F P VLTAL  V GAGKTTLMDVLA  +TG Y  G ++ISGY + ++TFARVS YCEQ DIHSP  T+ E            +VD+             V+ KSL ++ VG PG
Sbjct:  891 VSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPG 1008

HSP 2 Score: 27.335 bits (59), Expect = 8.911e-22
Identity = 13/26 (50.00%), Postives = 17/26 (65.38%), Query Frame = 2 
Query:  362 GMILPFQPPFT*HSDNMTYFVDMPAD 439
            GM+LPF P  +   DN+ Y VDMP +
Sbjct:  850 GMVLPFTP-LSLSFDNVRYSVDMPQE 874

HSP 3 Score: 20.4014 bits (41), Expect = 8.911e-22
Identity = 8/15 (53.33%), Postives = 10/15 (66.67%), Query Frame = 3 
Query:  897 VATPSNFLREEPTTG 941
            VA PS    +EPT+G
Sbjct: 1027 VANPSIIFMDEPTSG 1041
[Close]
BLAST of DY259929 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.911e-22
Identity = 57/118 (48.31%), Postives = 69/118 (58.47%), Query Frame = 1 
Query:  487 VRGVFMPRVLTALRCVRGAGKTTLMDVLA*TETG*YSGGDLSISGYHENRKTFARVSDYCEQTDIHSPYSTLDEXXXXXXXXXXXXNVDAXXXXXXXXXXXXXVDHKSLDESTVGPPG 840
            V G F P VLTAL  V GAGKTTLMDVLA  +TG Y  G ++ISGY + ++TFARVS YCEQ DIHSP  T+ E            +VD+             V+ KSL ++ VG PG
Sbjct:  891 VSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPG 1008

HSP 2 Score: 27.335 bits (59), Expect = 8.911e-22
Identity = 13/26 (50.00%), Postives = 17/26 (65.38%), Query Frame = 2 
Query:  362 GMILPFQPPFT*HSDNMTYFVDMPAD 439
            GM+LPF P  +   DN+ Y VDMP +
Sbjct:  850 GMVLPFTP-LSLSFDNVRYSVDMPQE 874

HSP 3 Score: 20.4014 bits (41), Expect = 8.911e-22
Identity = 8/15 (53.33%), Postives = 10/15 (66.67%), Query Frame = 3 
Query:  897 VATPSNFLREEPTTG 941
            VA PS    +EPT+G
Sbjct: 1027 VANPSIIFMDEPTSG 1041
[Close]
BLAST of DY259929 vs. ExPASy Swiss-Prot
Match: PDR2_NICPL (Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.155e-21
Identity = 55/116 (47.41%), Postives = 65/116 (56.03%), Query Frame = 1 
Query:  493 GVFMPRVLTALRCVRGAGKTTLMDVLA*TETG*YSGGDLSISGYHENRKTFARVSDYCEQTDIHSPYSTLDEXXXXXXXXXXXXNVDAXXXXXXXXXXXXXVDHKSLDESTVGPPG 840
            G F P +LTAL  V GAGKTTLMDVLA  +TG Y  G ++ISGY +N+ TFARVS YCEQ DIHSPY T+ E            +V               V+ K L  + VG PG
Sbjct:  892 GAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKNQTTFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLASDVKTETRKMFVEEVMELVELKLLRNALVGLPG 1007

HSP 2 Score: 30.0314 bits (66), Expect = 1.155e-21
Identity = 14/26 (53.85%), Postives = 20/26 (76.92%), Query Frame = 2 
Query:  362 GMILPFQPPFT*HSDNMTYFVDMPAD 439
            GMILPFQ P +   +++ Y+VDMPA+
Sbjct:  849 GMILPFQ-PLSLAFNHVNYYVDMPAE 873

HSP 3 Score: 20.4014 bits (41), Expect = 1.155e-21
Identity = 8/15 (53.33%), Postives = 10/15 (66.67%), Query Frame = 3 
Query:  897 VATPSNFLREEPTTG 941
            VA PS    +EPT+G
Sbjct: 1026 VANPSIIFMDEPTSG 1040
[Close]
BLAST of DY259929 vs. ExPASy Swiss-Prot
Match: AB36G_ARATH (ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.478e-21
Identity = 56/118 (47.46%), Postives = 66/118 (55.93%), Query Frame = 1 
Query:  487 VRGVFMPRVLTALRCVRGAGKTTLMDVLA*TETG*YSGGDLSISGYHENRKTFARVSDYCEQTDIHSPYSTLDEXXXXXXXXXXXXNVDAXXXXXXXXXXXXXVDHKSLDESTVGPPG 840
            V G F P VLTAL  V GAGKTTLMDVLA  +TG Y  GD+ ISG+ + ++TFAR+S YCEQTDIHSP  T+ E             V               V+  SL +S VG PG
Sbjct:  898 VTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDEKMMFVDQVMELVELDSLRDSIVGLPG 1015

HSP 2 Score: 28.4906 bits (62), Expect = 5.478e-21
Identity = 13/26 (50.00%), Postives = 17/26 (65.38%), Query Frame = 2 
Query:  362 GMILPFQPPFT*HSDNMTYFVDMPAD 439
            GM+LPF P      D++ YFVDMP +
Sbjct:  857 GMVLPFTP-LAMSFDDVKYFVDMPGE 881

HSP 3 Score: 20.4014 bits (41), Expect = 5.478e-21
Identity = 8/15 (53.33%), Postives = 10/15 (66.67%), Query Frame = 3 
Query:  897 VATPSNFLREEPTTG 941
            VA PS    +EPT+G
Sbjct: 1034 VANPSIIFMDEPTSG 1048
[Close]
BLAST of DY259929 vs. ExPASy Swiss-Prot
Match: PDR12_ORYSJ (Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp. japonica GN=PDR12 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.178e-21
Identity = 48/74 (64.86%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:  487 VRGVFMPRVLTALRCVRGAGKTTLMDVLA*TETG*YSGGDLSISGYHENRKTFARVSDYCEQTDIHSPYSTLDE 708
            V G F P VLTAL  V GAGKTTLMDVLA  +TG Y  GD+ ISGY +N++TFAR+S YCEQ DIHSP  T+ E
Sbjct:  925 VTGSFRPAVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDMRISGYPKNQETFARISGYCEQNDIHSPQVTVRE 998

HSP 2 Score: 29.6462 bits (65), Expect = 6.178e-21
Identity = 13/26 (50.00%), Postives = 19/26 (73.08%), Query Frame = 2 
Query:  362 GMILPFQPPFT*HSDNMTYFVDMPAD 439
            GM+LPF P  +   D++ Y+VDMPA+
Sbjct:  884 GMVLPFTP-LSMSFDDVNYYVDMPAE 908
The following BLAST results are available for this feature:
BLAST of DY259929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
AB34G_ARATH5.176e-3948.31ABC transporter G family member 34 OS=Arabidopsis ... [more]
AB39G_ARATH5.797e-3748.31ABC transporter G family member 39 OS=Arabidopsis ... [more]
PDR13_ORYSJ1.291e-2558.11Pleiotropic drug resistance protein 13 OS=Oryza sa... [more]
AB40G_ARATH7.068e-2346.72ABC transporter G family member 40 OS=Arabidopsis ... [more]
AB29G_ARATH2.435e-2246.61ABC transporter G family member 29 OS=Arabidopsis ... [more]
PDR3_ORYSJ8.911e-2248.31Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI8.911e-2248.31Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR2_NICPL1.155e-2147.41Pleiotropic drug resistance protein 2 OS=Nicotiana... [more]
AB36G_ARATH5.478e-2147.46ABC transporter G family member 36 OS=Arabidopsis ... [more]
PDR12_ORYSJ6.178e-2164.86Pleiotropic drug resistance protein 12 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YK20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259929 ID=DY259929; Name=DY259929; organism=Citrus clementina; type=EST; length=1047bp
ATGGACATACCTCGTTGCTTGTAAAAGAATTCCCTGCCGGAACATGGGAT
GCACAAAATAGCGACCCCCGTACTAACCCACCAACGATTGGGAACGTACT
TCTCAAAATTAAGGGCTTCTCCACTGAAAGTAAGTGGTATTGCATTGGCG
TTGGATCACGGACAGGATTTTCTTATCGCATCGACTTTCTGTTTAGTGCG
GCCTTGGCTTACGTAAATCCTATAGGGGATTCCTATTCGACTGGCTTAAA
TTAATATGGATAGAAGCTGCGAGCATCTGGACATCAAACGAAATGTATGC
ACATGGCGATGAGAAGTTCATCTATTCCTGCTGGGGCTGCTCAAAATGTA
ACTAACTAGTGGGGATGATTTTACCCTTCCAGCCCCCTTTCACTTGACAT
TCTGACAATATGACCTACTTCGTGGATATGCCTGCAGATTGAGGACTGAA
GGACTTGGAGAAGATCTTCTTCTACTGCTACGCAGTGTCCGCGGTGTATT
CATGCCAAGAGTATTGACAGCGTTAAGGTGTGTACGTGGAGCGGGGAAGA
CAACTCTGATGGATGTACTGGCATGAACCGAAACCGGATGATATAGCGGC
GGAGACCTTAGTATTTCTGGTTATCACGAGAACCGCAAAACCTTTGCTCG
AGTGAGTGATTATTGTGAACAGACTGACATCCATTCACCCTATAGTACCC
TCGATGAATCTCCCCTCCTAGGCTCCTGACCTCGTCTGTCTTCAAACGTT
GATGCAAAAAAAAAAAAAAGTTTGTTGATCTAGTTATCCGACCTTGTCGA
CCACAAATCATTGGATGAATCTACCGTTGGCCCTCCCGGAAATATTGCTC
TGCCCAACGAAGAAAAAAAAAAAATTGAAGAGAGCCGCAAAAGTGGGTTG
CCACCCCTTCCAACTTCCTCCGGGAGGAGCCCACCACCGGGGCTTGCGGG
GAAGCCCGGCGGCAATGGCCCTTCCCTCCCGCCAAAAAAATTTTGTGAAA
ACACGGGATAAATTTTTTGGTTGTACAATCCCCACCAATCCAATGAT
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