DY259947
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_CITSI (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Citrus sinensis GN=ndhF PE=3 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 1.876e-52 Identity = 107/136 (78.68%), Postives = 108/136 (79.41%), Query Frame = -3 Query: 3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410 MEHTYQYSW LFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLR+WTITSDLSFEFGYFIDPLTSIMS IYSDNYMSHDQGYLRFFAYMSFFNASML Sbjct: 1 MEHTYQYSWIIPLVPLPVPMLIGVGLLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRTWTITSDLSFEFGYFIDPLTSIMSILITTVGILVLIYSDNYMSHDQGYLRFFAYMSFFNASML 136
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_PACAQ (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment) OS=Pachira aquatica GN=ndhF PE=3 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 1.032e-42 Identity = 90/136 (66.18%), Postives = 97/136 (71.32%), Query Frame = -3 Query: 3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410 MEHTYQYSW L FP ATKNLRRMWAF +ILLLSIVMIFS+DLSI+QI+R+SIYQ + SWTI +D SFEFGYFID LTSIMS IY DNYMSHDQGYLRFFAYMS FN SML Sbjct: 1 MEHTYQYSWIIPFVPLPIPIKIGMGLLLFPMATKNLRRMWAFPNILLLSIVMIFSVDLSIQQINRSSIYQYVWSWTINNDFSFEFGYFIDSLTSIMSILITTVGIFVLIYXDNYMSHDQGYLRFFAYMSLFNTSML 136
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_VITVI (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Vitis vinifera GN=ndhF PE=3 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 2.298e-42 Identity = 88/136 (64.71%), Postives = 97/136 (71.32%), Query Frame = -3 Query: 3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410 MEHTYQY+W L FPTATKNLRRMW+F S+LLLSIVM FS++LSI QI+ +SIYQ + SWTI +D S EFGY IDPLTSIMS IYSDNYMSHDQGYLRFFAYMSFFNASML Sbjct: 1 MEHTYQYAWIIPFLPLPIPMLLGVGLLLFPTATKNLRRMWSFTSVLLLSIVMTFSVNLSIHQINSSSIYQYVWSWTINNDFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMSHDQGYLRFFAYMSFFNASML 136
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_MALAR (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment) OS=Malvaviscus arboreus GN=ndhF PE=3 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 5.120e-42 Identity = 90/136 (66.18%), Postives = 96/136 (70.59%), Query Frame = -3 Query: 3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410 MEH YQYSW L FPTATKNLRRMWAF +ILLLSIVMIFSIDLSI+QI+ + IYQ + SWTI +D SFEFGYFID LTSIMS IYSDNYMSHDQGYLRFFAYMS FN SML Sbjct: 1 MEHAYQYSWIIPFVPLPIPILIGIGLLLFPTATKNLRRMWAFPNILLLSIVMIFSIDLSIQQINGSYIYQYVWSWTINNDFSFEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYMSLFNTSML 136
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_ARATH (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Arabidopsis thaliana GN=ndhF PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.141e-41 Identity = 88/136 (64.71%), Postives = 96/136 (70.59%), Query Frame = -3 Query: 3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410 MEHTYQYSW L FPTATKNLRRMW F+SI LLSIVMIFSI LSI+QI + I+Q++ SWTI ++ SFEFGYFIDPLTSIMS IYSDNYMSHDQGYLRFFAYM FFN SML Sbjct: 1 MEHTYQYSWIIPFIPLPVPILLGVGLLLFPTATKNLRRMWTFLSIFLLSIVMIFSIYLSIQQIFLSCIHQNVWSWTINNEFSFEFGYFIDPLTSIMSILITTVGILVLIYSDNYMSHDQGYLRFFAYMGFFNTSML 136
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_OLIPU (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Olimarabidopsis pumila GN=ndhF PE=3 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 1.945e-41 Identity = 87/136 (63.97%), Postives = 96/136 (70.59%), Query Frame = -3 Query: 3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410 MEHTYQYSW L FPTATKNLRRMW F+SI LLSIVMIFS+ LSI+QI + I+Q++ SWTI ++ SFEFGYFIDPLTSIMS IYSDNYMSHDQGYLRFFAYM FFN SML Sbjct: 1 MEHTYQYSWIIPFIPLPVPILLGVGLLLFPTATKNLRRMWTFLSIFLLSIVMIFSLYLSIQQIFLSCIHQNVWSWTINNEFSFEFGYFIDPLTSIMSILITTVGILVLIYSDNYMSHDQGYLRFFAYMGFFNTSML 136
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_LEPVR (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Lepidium virginicum GN=ndhF PE=3 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 2.541e-41 Identity = 87/136 (63.97%), Postives = 96/136 (70.59%), Query Frame = -3 Query: 3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410 MEHTYQYSW L FPTATKNLRRMW F+SI LLSIVMIFS+ LSI+QI + I+Q++ SWTI ++ SFEFGYFIDPLTSIMS IYSDNYMSHDQGYLRFFAYM FFN SML Sbjct: 1 MEHTYQYSWIIPFIPLPVPILLGVGLLLFPTATKNLRRMWTFLSIFLLSIVMIFSLYLSIQQIFVSCIHQNVWSWTINNEFSFEFGYFIDPLTSIMSILISTVGILVLIYSDNYMSHDQGYLRFFAYMGFFNTSML 136
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_CRUWA (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Crucihimalaya wallichii GN=ndhF PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 4.334e-41 Identity = 86/136 (63.24%), Postives = 96/136 (70.59%), Query Frame = -3 Query: 3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410 M+HTYQYSW L FPTATKNLRRMW F+SI LLSIVMIFS+ LSI+QI + I+Q++ SWTI ++ SFEFGYFIDPLTSIMS IYSDNYMSHDQGYLRFFAYM FFN SML Sbjct: 1 MDHTYQYSWIIPFIPLPVPILLGVGLLLFPTATKNLRRMWTFLSIFLLSIVMIFSLYLSIQQIFLSCIHQNVWSWTINNEFSFEFGYFIDPLTSIMSILITTVGILVLIYSDNYMSHDQGYLRFFAYMGFFNTSML 136
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_CARPA (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Carica papaya GN=ndhF PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 4.334e-41 Identity = 88/136 (64.71%), Postives = 95/136 (69.85%), Query Frame = -3 Query: 3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410 MEH YQYSW L FPTATKNLRRMWAF+SI LLSIVMIFSIDLSI+QI +S YQ + SWTI ++ SFEFG IDPLTSIMS IYSD+YMSHDQGYLRFFAYMSFFN SML Sbjct: 1 MEHIYQYSWMIPFIPLPVPILLGMGLLLFPTATKNLRRMWAFLSIFLLSIVMIFSIDLSIQQITGSSAYQYVWSWTINNEFSFEFGNLIDPLTSIMSILITTVGILVLIYSDSYMSHDQGYLRFFAYMSFFNTSML 136
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_BARVE (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Barbarea verna GN=ndhF PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 4.334e-41 Identity = 86/136 (63.24%), Postives = 96/136 (70.59%), Query Frame = -3 Query: 3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410 MEHTYQYSW L FPTATKNLRRMW F+SI LLSIVMIF++ LSI+QI + I+Q++ SWTI ++ SFEFGYFIDPLTSIMS IYSDNYMSHDQGYLRFFAYM FFN SML Sbjct: 1 MEHTYQYSWIIPFIPLPVPILLGVGLLLFPTATKNLRRMWTFLSIFLLSIVMIFALYLSIQQIILSCIHQNVWSWTINNEFSFEFGYFIDPLTSIMSILITTVGILVLIYSDNYMSHDQGYLRFFAYMGFFNTSML 136 The following BLAST results are available for this feature:
BLAST of DY259947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 121
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Sequences
The
following sequences are available for this feature:
EST sequence >DY259947 ID=DY259947; Name=DY259947; organism=Citrus clementina; type=EST; length=595bpback to top |