DY259947

Overview
NameDY259947
Unique NameDY259947
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1366 contig Ccv1_Contig1366:1..595. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_CITSI (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Citrus sinensis GN=ndhF PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.876e-52
Identity = 107/136 (78.68%), Postives = 108/136 (79.41%), Query Frame = -3
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            MEHTYQYSW                 LFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLR+WTITSDLSFEFGYFIDPLTSIMS           IYSDNYMSHDQGYLRFFAYMSFFNASML
Sbjct:    1 MEHTYQYSWIIPLVPLPVPMLIGVGLLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRTWTITSDLSFEFGYFIDPLTSIMSILITTVGILVLIYSDNYMSHDQGYLRFFAYMSFFNASML 136          
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_PACAQ (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment) OS=Pachira aquatica GN=ndhF PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.032e-42
Identity = 90/136 (66.18%), Postives = 97/136 (71.32%), Query Frame = -3
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            MEHTYQYSW                 L FP ATKNLRRMWAF +ILLLSIVMIFS+DLSI+QI+R+SIYQ + SWTI +D SFEFGYFID LTSIMS           IY DNYMSHDQGYLRFFAYMS FN SML
Sbjct:    1 MEHTYQYSWIIPFVPLPIPIKIGMGLLLFPMATKNLRRMWAFPNILLLSIVMIFSVDLSIQQINRSSIYQYVWSWTINNDFSFEFGYFIDSLTSIMSILITTVGIFVLIYXDNYMSHDQGYLRFFAYMSLFNTSML 136          
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_VITVI (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Vitis vinifera GN=ndhF PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.298e-42
Identity = 88/136 (64.71%), Postives = 97/136 (71.32%), Query Frame = -3
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            MEHTYQY+W                 L FPTATKNLRRMW+F S+LLLSIVM FS++LSI QI+ +SIYQ + SWTI +D S EFGY IDPLTSIMS           IYSDNYMSHDQGYLRFFAYMSFFNASML
Sbjct:    1 MEHTYQYAWIIPFLPLPIPMLLGVGLLLFPTATKNLRRMWSFTSVLLLSIVMTFSVNLSIHQINSSSIYQYVWSWTINNDFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMSHDQGYLRFFAYMSFFNASML 136          
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_MALAR (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment) OS=Malvaviscus arboreus GN=ndhF PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.120e-42
Identity = 90/136 (66.18%), Postives = 96/136 (70.59%), Query Frame = -3
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            MEH YQYSW                 L FPTATKNLRRMWAF +ILLLSIVMIFSIDLSI+QI+ + IYQ + SWTI +D SFEFGYFID LTSIMS           IYSDNYMSHDQGYLRFFAYMS FN SML
Sbjct:    1 MEHAYQYSWIIPFVPLPIPILIGIGLLLFPTATKNLRRMWAFPNILLLSIVMIFSIDLSIQQINGSYIYQYVWSWTINNDFSFEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYMSLFNTSML 136          
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_ARATH (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Arabidopsis thaliana GN=ndhF PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.141e-41
Identity = 88/136 (64.71%), Postives = 96/136 (70.59%), Query Frame = -3
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            MEHTYQYSW                 L FPTATKNLRRMW F+SI LLSIVMIFSI LSI+QI  + I+Q++ SWTI ++ SFEFGYFIDPLTSIMS           IYSDNYMSHDQGYLRFFAYM FFN SML
Sbjct:    1 MEHTYQYSWIIPFIPLPVPILLGVGLLLFPTATKNLRRMWTFLSIFLLSIVMIFSIYLSIQQIFLSCIHQNVWSWTINNEFSFEFGYFIDPLTSIMSILITTVGILVLIYSDNYMSHDQGYLRFFAYMGFFNTSML 136          
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_OLIPU (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Olimarabidopsis pumila GN=ndhF PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.945e-41
Identity = 87/136 (63.97%), Postives = 96/136 (70.59%), Query Frame = -3
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            MEHTYQYSW                 L FPTATKNLRRMW F+SI LLSIVMIFS+ LSI+QI  + I+Q++ SWTI ++ SFEFGYFIDPLTSIMS           IYSDNYMSHDQGYLRFFAYM FFN SML
Sbjct:    1 MEHTYQYSWIIPFIPLPVPILLGVGLLLFPTATKNLRRMWTFLSIFLLSIVMIFSLYLSIQQIFLSCIHQNVWSWTINNEFSFEFGYFIDPLTSIMSILITTVGILVLIYSDNYMSHDQGYLRFFAYMGFFNTSML 136          
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_LEPVR (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Lepidium virginicum GN=ndhF PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.541e-41
Identity = 87/136 (63.97%), Postives = 96/136 (70.59%), Query Frame = -3
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            MEHTYQYSW                 L FPTATKNLRRMW F+SI LLSIVMIFS+ LSI+QI  + I+Q++ SWTI ++ SFEFGYFIDPLTSIMS           IYSDNYMSHDQGYLRFFAYM FFN SML
Sbjct:    1 MEHTYQYSWIIPFIPLPVPILLGVGLLLFPTATKNLRRMWTFLSIFLLSIVMIFSLYLSIQQIFVSCIHQNVWSWTINNEFSFEFGYFIDPLTSIMSILISTVGILVLIYSDNYMSHDQGYLRFFAYMGFFNTSML 136          
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_CRUWA (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Crucihimalaya wallichii GN=ndhF PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.334e-41
Identity = 86/136 (63.24%), Postives = 96/136 (70.59%), Query Frame = -3
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            M+HTYQYSW                 L FPTATKNLRRMW F+SI LLSIVMIFS+ LSI+QI  + I+Q++ SWTI ++ SFEFGYFIDPLTSIMS           IYSDNYMSHDQGYLRFFAYM FFN SML
Sbjct:    1 MDHTYQYSWIIPFIPLPVPILLGVGLLLFPTATKNLRRMWTFLSIFLLSIVMIFSLYLSIQQIFLSCIHQNVWSWTINNEFSFEFGYFIDPLTSIMSILITTVGILVLIYSDNYMSHDQGYLRFFAYMGFFNTSML 136          
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_CARPA (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Carica papaya GN=ndhF PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.334e-41
Identity = 88/136 (64.71%), Postives = 95/136 (69.85%), Query Frame = -3
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            MEH YQYSW                 L FPTATKNLRRMWAF+SI LLSIVMIFSIDLSI+QI  +S YQ + SWTI ++ SFEFG  IDPLTSIMS           IYSD+YMSHDQGYLRFFAYMSFFN SML
Sbjct:    1 MEHIYQYSWMIPFIPLPVPILLGMGLLLFPTATKNLRRMWAFLSIFLLSIVMIFSIDLSIQQITGSSAYQYVWSWTINNEFSFEFGNLIDPLTSIMSILITTVGILVLIYSDSYMSHDQGYLRFFAYMSFFNTSML 136          
BLAST of DY259947 vs. ExPASy Swiss-Prot
Match: NU5C_BARVE (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Barbarea verna GN=ndhF PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.334e-41
Identity = 86/136 (63.24%), Postives = 96/136 (70.59%), Query Frame = -3
Query:    3 MEHTYQYSWXXXXXXXXXXXXXXXXXLFFPTATKNLRRMWAFISILLLSIVMIFSIDLSIEQIDRTSIYQSLRSWTITSDLSFEFGYFIDPLTSIMSXXXXXXXXXXXIYSDNYMSHDQGYLRFFAYMSFFNASML 410
            MEHTYQYSW                 L FPTATKNLRRMW F+SI LLSIVMIF++ LSI+QI  + I+Q++ SWTI ++ SFEFGYFIDPLTSIMS           IYSDNYMSHDQGYLRFFAYM FFN SML
Sbjct:    1 MEHTYQYSWIIPFIPLPVPILLGVGLLLFPTATKNLRRMWTFLSIFLLSIVMIFALYLSIQQIILSCIHQNVWSWTINNEFSFEFGYFIDPLTSIMSILITTVGILVLIYSDNYMSHDQGYLRFFAYMGFFNTSML 136          
The following BLAST results are available for this feature:
BLAST of DY259947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
NU5C_CITSI1.876e-5278.68NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_PACAQ1.032e-4266.18NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_VITVI2.298e-4264.71NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_MALAR5.120e-4266.18NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_ARATH1.141e-4164.71NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_OLIPU1.945e-4163.97NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_LEPVR2.541e-4163.97NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_CRUWA4.334e-4163.24NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_CARPA4.334e-4164.71NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_BARVE4.334e-4163.24NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YL19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259947 ID=DY259947; Name=DY259947; organism=Citrus clementina; type=EST; length=595bp
CCTAACATTGAAGCATTGAAAAAACTCATATAAGCAAAAAATCTCAAATA
TCCTTGATCATGAGACATATAATTGTCACTATAAATAAGAACCAGAATTC
CAACTGTAGTGATTAATATTGACATAATAGAAGTAAGTGGATCAATAAAG
TATCCGAACTCGAAAGACAAATCACTAGTGATGGTCCAACTCCTTAGGGA
TTGATAGATCGAAGTTCTATCTATTTGCTCAATAGATAGATCGATCGAAA
AAATCATAACTATACTTAACAATAAAATACTAATAAAAGCCCACATACGG
CGAAGATTTTTTGTTGCGGTCGGAAAAAATAGAAGTCCCACCCCTATTAA
CATAGGGACTGGAAGTGGAACTAAAGGTATGATCCAGGAATATTGATATG
TATGTTCCATAAAATCAATAAAGTAATAATAATTGTTTTTTATTCTTAAT
TCAGTGTTTCTGATTCACCGGTTCTTATCTCTTTTAAATTTAAAAGGGAT
TAATAAAAAAATTAAGGTTAAGGTATTAAAATGAAAAACTTAAATAAAAT
TCGCTTTTTCTATTCATAGTTATTTTGAATCTTTCCCACCAACTT
back to top