DY259964

Overview
NameDY259964
Unique NameDY259964
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1374 contig Ccv1_Contig1374:1..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP4M1_BOVIN (AP-4 complex subunit mu-1 OS=Bos taurus GN=AP4M1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.814e-27
Identity = 63/172 (36.63%), Postives = 107/172 (62.21%), Query Frame = 1 
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIF---MQGTKRMPGTAVTKSVVANEPGGRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFD 507
            ++ +N  LVYELLDEV+D+GYVQTTSTEVL++++  E +V     L  LS   +F    Q +K  P +A ++ V+++     ++ E+F+D++E++SV  +S+G +L  ++ G I++KS+L    E+R+ L ++  +GK     Y      G G + +DE++ H SV LD F+
Sbjct:  101 TISRNVALVYELLDEVLDYGYVQTTSTEVLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLSSRSDQSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCVGKSELRGY------GPG-IRVDEVSFHSSVYLDEFE 265

HSP 2 Score: 23.0978 bits (48), Expect = 3.814e-27
Identity = 10/18 (55.56%), Postives = 10/18 (55.56%), Query Frame = 3 
Query:  513 RTLSLVPPNGEFLVWNYQ 566
            R L L PP GE  V  YQ
Sbjct:  268 RILRLQPPQGELTVMRYQ 285
[Close]
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP4M1_HUMAN (AP-4 complex subunit mu-1 OS=Homo sapiens GN=AP4M1 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 4.965e-27
Identity = 62/172 (36.05%), Postives = 107/172 (62.21%), Query Frame = 1 
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIF---MQGTKRMPGTAVTKSVVANEPGGRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFD 507
            ++ +N  LVYELLDEV+D+GYVQTTSTE+L++++  E +V     L  LS   +F    Q +K  P +A ++ V+++     ++ E+F+D++E++SV  +S+G +L  ++ G I++KS+L    E+R+ L ++  +GK     Y      G G + +DE++ H SV LD F+
Sbjct:  101 TISRNVALVYELLDEVLDYGYVQTTSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLSSRSDQSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCVGKSELRGY------GPG-IRVDEVSFHSSVNLDEFE 265

HSP 2 Score: 23.0978 bits (48), Expect = 4.965e-27
Identity = 10/18 (55.56%), Postives = 10/18 (55.56%), Query Frame = 3 
Query:  513 RTLSLVPPNGEFLVWNYQ 566
            R L L PP GE  V  YQ
Sbjct:  268 RILRLQPPQGELTVMRYQ 285
[Close]
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP4M1_MOUSE (AP-4 complex subunit mu-1 OS=Mus musculus GN=Ap4m1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.415e-26
Identity = 62/172 (36.05%), Postives = 105/172 (61.05%), Query Frame = 1 
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIF---MQGTKRMPGTAVTKSVVANEPGGRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFD 507
            ++ +N  LVYELLDEV+D+GYVQTTSTE+L++++  E +V     L  LS   +F    Q  K  P +A ++ V+++     ++ E+F+D++E++SV  +S+G +L  ++ G I++KS+L    EI + L ++  +GK     Y      G G + +DE++ H SV LD F+
Sbjct:  101 TISRNVALVYELLDEVLDYGYVQTTSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQNKVAPSSAASRPVLSSRSDQSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEICIGLTEEFCVGKSELRGY------GPG-IRVDEVSFHSSVNLDEFE 265

HSP 2 Score: 23.0978 bits (48), Expect = 2.415e-26
Identity = 10/18 (55.56%), Postives = 10/18 (55.56%), Query Frame = 3 
Query:  513 RTLSLVPPNGEFLVWNYQ 566
            R L L PP GE  V  YQ
Sbjct:  268 RILRLQPPQGELTVMRYQ 285
[Close]
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP4M1_RAT (AP-4 complex subunit mu-1 OS=Rattus norvegicus GN=Ap4m1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.589e-25
Identity = 60/172 (34.88%), Postives = 106/172 (61.63%), Query Frame = 1 
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKR---MPGTAVTKSVVANEPGGRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFD 507
            ++ +N  LVYELLDEV+D+GYVQTTST++L++++  E  V     L  LS   +F   T++    P +A ++ V+++     ++ E+F+D++E++SV  +S+G +L  ++ G I++KS+L  + EI + L ++  +GK     Y      G G + +DE++ H SV LD F+
Sbjct:  101 TISRNVALVYELLDEVLDYGYVQTTSTDMLRNFIQTEAAVSKPFSLFDLSSVGLFGAETQQNRVAPSSAASRPVLSSRSDQSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSSSEICIGLTEEFCVGKSELRGY------GPG-IRVDEVSFHSSVNLDEFE 265

HSP 2 Score: 23.0978 bits (48), Expect = 2.589e-25
Identity = 10/18 (55.56%), Postives = 10/18 (55.56%), Query Frame = 3 
Query:  513 RTLSLVPPNGEFLVWNYQ 566
            R L L PP GE  V  YQ
Sbjct:  268 RILHLQPPQGELTVMRYQ 285
[Close]
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP1M1_HUMAN (AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1 PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 1.639e-24
Identity = 64/179 (35.75%), Postives = 104/179 (58.10%), Query Frame = 1 
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGRKRE-EIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFDVEGLCPWFP 534
            S+R NFV++YELLDE++DFGY QTT +++L+ Y+  E   ++               G  R P T VT +V     G + R+ E+F+D+IE +++  S++G +L SEI G+I+M+ +L+G PE+RL LND +L        +D      S +V L+++  H+ VRL  F+ +    + P
Sbjct:  102 SIRDNFVIIYELLDELMDFGYPQTTDSKILQEYITQEGHKLET--------------GAPRPPAT-VTNAVSWRSEGIKYRKNEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVL--------FDNTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIP 257

HSP 2 Score: 26.5646 bits (57), Expect = 1.639e-24
Identity = 9/18 (50.00%), Postives = 15/18 (83.33%), Query Frame = 3 
Query:  513 RTLSLVPPNGEFLVWNYQ 566
            RT+S +PP+GEF + +Y+
Sbjct:  251 RTISFIPPDGEFELMSYR 268
[Close]
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP1M1_BOVIN (AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 1.639e-24
Identity = 64/179 (35.75%), Postives = 104/179 (58.10%), Query Frame = 1 
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGRKRE-EIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFDVEGLCPWFP 534
            S+R NFV++YELLDE++DFGY QTT +++L+ Y+  E   ++               G  R P T VT +V     G + R+ E+F+D+IE +++  S++G +L SEI G+I+M+ +L+G PE+RL LND +L        +D      S +V L+++  H+ VRL  F+ +    + P
Sbjct:  102 SIRDNFVIIYELLDELMDFGYPQTTDSKILQEYITQEGHKLET--------------GAPRPPAT-VTNAVSWRSEGIKYRKNEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVL--------FDNTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIP 257

HSP 2 Score: 26.5646 bits (57), Expect = 1.639e-24
Identity = 9/18 (50.00%), Postives = 15/18 (83.33%), Query Frame = 3 
Query:  513 RTLSLVPPNGEFLVWNYQ 566
            RT+S +PP+GEF + +Y+
Sbjct:  251 RTISFIPPDGEFELMSYR 268
[Close]
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP1M1_RAT (AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=Ap1m1 PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 2.133e-24
Identity = 64/179 (35.75%), Postives = 104/179 (58.10%), Query Frame = 1 
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGRKRE-EIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFDVEGLCPWFP 534
            S+R NFV++YELLDE++DFGY QTT +++L+ Y+  E   ++               G  R P T VT +V     G + R+ E+F+D+IE +++  S++G +L SEI G+I+M+ +L+G PE+RL LND +L        +D      S +V L+++  H+ VRL  F+ +    + P
Sbjct:  102 SIRDNFVIIYELLDELMDFGYPQTTDSKILQEYITQEGHKLET--------------GAPRPPAT-VTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVL--------FDNTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIP 257

HSP 2 Score: 26.5646 bits (57), Expect = 2.133e-24
Identity = 9/18 (50.00%), Postives = 15/18 (83.33%), Query Frame = 3 
Query:  513 RTLSLVPPNGEFLVWNYQ 566
            RT+S +PP+GEF + +Y+
Sbjct:  251 RTISFIPPDGEFELMSYR 268
[Close]
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP1M1_MOUSE (AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1 PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 2.133e-24
Identity = 64/179 (35.75%), Postives = 104/179 (58.10%), Query Frame = 1 
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGRKRE-EIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFDVEGLCPWFP 534
            S+R NFV++YELLDE++DFGY QTT +++L+ Y+  E   ++               G  R P T VT +V     G + R+ E+F+D+IE +++  S++G +L SEI G+I+M+ +L+G PE+RL LND +L        +D      S +V L+++  H+ VRL  F+ +    + P
Sbjct:  102 SIRDNFVIIYELLDELMDFGYPQTTDSKILQEYITQEGHKLET--------------GAPRPPAT-VTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVL--------FDNTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIP 257

HSP 2 Score: 26.5646 bits (57), Expect = 2.133e-24
Identity = 9/18 (50.00%), Postives = 15/18 (83.33%), Query Frame = 3 
Query:  513 RTLSLVPPNGEFLVWNYQ 566
            RT+S +PP+GEF + +Y+
Sbjct:  251 RTISFIPPDGEFELMSYR 268
[Close]
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP2M1_XENTR (AP-2 complex subunit mu-1 OS=Xenopus tropicalis GN=ap2m1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.499e-24
Identity = 67/220 (30.45%), Postives = 108/220 (49.09%), Query Frame = 1 
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGR----------KREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFDVEGLCPWFPRTVNF---WYGTTNDPGILTSFSFNPWGEKAG 621
            +++ NFVL+YELLDE++DFGY Q + T  LK++                    I  QG K    T   +S + ++  G+          +R E+F+D++E +++  S  G +L++ + G + MKSYL+G PE +  +ND ++I K  +   D    TG  ++ +D+   H+ VRL  FD E    + P    F    Y TT D  I+  F   P   + G
Sbjct:  100 NIKNNFVLIYELLDEILDFGYPQNSETGALKTF--------------------ITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETGKTGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKD--IILPFRVIPLVREVG 297
[Close]
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP2M1_RAT (AP-2 complex subunit mu OS=Rattus norvegicus GN=Ap2m1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.499e-24
Identity = 67/220 (30.45%), Postives = 109/220 (49.55%), Query Frame = 1 
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGR----------KREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFDVEGLCPWFPRTVNF---WYGTTNDPGILTSFSFNPWGEKAG 621
            +++ NFVL+YELLDE++DFGY Q + T  LK++                    I  QG K    T   +S + ++  G+          +R E+F+D++E +++  S  G +L++ + G + MKSYL+G PE +  +ND ++I K  +   D  S +G  ++ +D+   H+ VRL  FD E    + P    F    Y TT D  I+  F   P   + G
Sbjct:  100 NIKNNFVLIYELLDEILDFGYPQNSETGALKTF--------------------ITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKD--IILPFRVIPLVREVG 297
The following BLAST results are available for this feature:
BLAST of DY259964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
AP4M1_BOVIN3.814e-2736.63AP-4 complex subunit mu-1 OS=Bos taurus GN=AP4M1 P... [more]
AP4M1_HUMAN4.965e-2736.05AP-4 complex subunit mu-1 OS=Homo sapiens GN=AP4M1... [more]
AP4M1_MOUSE2.415e-2636.05AP-4 complex subunit mu-1 OS=Mus musculus GN=Ap4m1... [more]
AP4M1_RAT2.589e-2534.88AP-4 complex subunit mu-1 OS=Rattus norvegicus GN=... [more]
AP1M1_HUMAN1.639e-2435.75AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1... [more]
AP1M1_BOVIN1.639e-2435.75AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 P... [more]
AP1M1_RAT2.133e-2435.75AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=... [more]
AP1M1_MOUSE2.133e-2435.75AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1... [more]
AP2M1_XENTR3.499e-2430.45AP-2 complex subunit mu-1 OS=Xenopus tropicalis GN... [more]
AP2M1_RAT3.499e-2430.45AP-2 complex subunit mu OS=Rattus norvegicus GN=Ap... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YM16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259964 ID=DY259964; Name=DY259964; organism=Citrus clementina; type=EST; length=765bp
TCACTTCGAAAGAACTTTGTGCTTGTCTATGAATTGCTTGATGAAGTCAT
CGATTTTGGTTATGTGCAAACAACGTCTACTGAAGTGTTGAAGTCCTATG
TATTTAATGAGCCAATTGTGGTTGATGCTGTACGCCTGCAACCGCTAAGC
CCTGCTGCTATTTTTATGCAAGGGACCAAACGAATGCCAGGAACAGCTGT
AACTAAATCTGTTGTGGCGAATGAGCCTGGAGGTAGGAAGAGAGAAGAAA
TTTTTGTGGATATTATTGAGAAAATTAGCGTGACATTCAGCTCAAGTGGA
TATATTCTGACTTCTGAGATTGATGGCACCATTCAAATGAAGAGCTACCT
CACTGGAAACCCGGAAATACGTTTGGCTCTTAATGATGACCTGCTCATTG
GGAAAGGCAGAAGATCAATCTATGATTACAGAAGTTCAACTGGGTCAGGA
GCTGTGGTACTTGATGAATTGAACCTTCATGAATCTGTACGTCTTGATAG
TTTTGATGTGGAAGGACTTTGTCCCTGGTTCCCCCGAACGGTGAATTTCT
GGTATGGAACTACCAATGACCCAGGAATTTTAACCTCTTTTTCTTTTAAT
CCTTGGGGTGAAAAAGCAGGACCCTTAGGGCGAAGTGGACATTAAAAAAA
TGGGGAATTTCCCCGCAAGCTTTATGGCACCCAATTTGTTGGAAAAATGG
GGCGGCCCAAATCACAAACAAAGAGGTTTTTGGGGTTGGAAACCGGGAGG
GTTGGGGAAAAAAAA
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