DY260015
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260015 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1) HSP 1 Score: 220.705 bits (561), Expect = 9.284e-57 Identity = 124/262 (47.33%), Postives = 141/262 (53.82%), Query Frame = 1 Query: 148 MASWVLSECGLKPLPHIFPRPRTG-----INPSKARFLHSKKSLTDLKLPSVKC-SGDFSRDKNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAXGTMFWALFVLGHDW*RNFFFLNLGASFPLLKFGFCFLICSGHGNLSKDHKLKSVGGHRPHSPFRFPYQGRKLAPGTLHQTHGLVKNDKSRPP 915 MASWVLSECGL+PLP ++P+PRTG NP+K RF S TDL S C S R+KNW L+VSAPLRV +E E+ FDPGAPPPFKL+DIR AIPKHCWVKDPW+SM Y Y NNWVVWPLYW A TMFWALFVLGHD GHG+ S D KL SV GH HS PY G +++ T HQ HG V+ND+S P Sbjct: 1 MASWVLSECGLRPLPRVYPKPRTGHPLLNSNPTKLRF-----SRTDLGNGSSFCLSSGILREKNWALRVSAPLRVLQVEEEEENKEGERVINGGEE----------FDPGAPPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAVVFGLAAVAAYFNNWVVWPLYWFAQSTMFWALFVLGHD--------------------------CGHGSFSNDPKLNSVVGHILHSSILVPYHGWRISHRTHHQNHGHVENDESWHP 221
BLAST of DY260015 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1) HSP 1 Score: 216.853 bits (551), Expect = 1.341e-55 Identity = 118/259 (45.56%), Postives = 140/259 (54.05%), Query Frame = 1 Query: 148 MASWVLSECGLKPLPHIFPRPRTGI---NPSKARFLHSKKSLTDLKLPSVKCSGDFSRDKNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAXGTMFWALFVLGHDW*RNFFFLNLGASFPLLKFGFCFLICSGHGNLSKDHKLKSVGGHRPHSPFRFPYQGRKLAPGTLHQTHGLVKNDKSRPP 915 MA+W +CGLKPL + PRPRTG + S+ FL + K + K ++C+ R++NWGLKVSAPLRVA +E E FDPGAPPPF LADIRAAIPKHCWVKDPW+SMSY YLNNW+VWPLYWAA GTMFWALFVLGHD GHG+ S + KL SV GH HS PY G +++ T HQ HG +ND+S P Sbjct: 1 MATWYHQKCGLKPLAPVIPRPRTGAALSSTSRVEFLDTNKVVAGPKFQPLRCN---LRERNWGLKVSAPLRVASIEEEQKSVDLTNGTNGVEHEKLPE-----FDPGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDVIAVFGLAAAAAYLNNWLVWPLYWAAQGTMFWALFVLGHD--------------------------CGHGSFSNNSKLNSVVGHLLHSSILVPYHGWRISHRTHHQHHGHAENDESWHP 225
BLAST of DY260015 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 1.875e-49 Identity = 113/260 (43.46%), Postives = 130/260 (50.00%), Query Frame = 1 Query: 151 ASWVLSECGLKPLPHIFPRPRTGINPSKARFLHSKKSLTDLK----LPSVKCSG-DFSRDKNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAXGTMFWALFVLGHDW*RNFFFLNLGASFPLLKFGFCFLICSGHGNLSKDHKLKSVGGHRPHSPFRFPYQGRKLAPGTLHQTHGLVKNDKSRPP 915 A WVLSECGL+PLP I+ RPR G SK L + L D K S K S S+ NW L V+ P+ V+ + GED FD GAPPPF LADIRAAIPKHCWVK+PW+SMSY Y NNWV WPLYW GTMFWALFVLGHD GHG+ S + KL SV GH HS PY G +++ T HQ HG V+ND+S P Sbjct: 3 AGWVLSECGLRPLPRIYSRPRIGFT-SKTTNLLKLRELPDSKSYNLCSSFKVSSWSNSKQSNWALNVAVPVNVSTVSGEDDREREEFNGIVNVDEGKGEF----FDAGAPPPFTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVAAYFNNWVAWPLYWFCQGTMFWALFVLGHD--------------------------CGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHP 231
BLAST of DY260015 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 7.125e-49 Identity = 113/264 (42.80%), Postives = 134/264 (50.76%), Query Frame = 1 Query: 148 MASWVLSECGLKPLPHIFPRPRTGINPSKARFLHSKKSLTDLKLPSVKCSGDFSRD---KNWGLKVSAPLRV-----APLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAXGTMFWALFVLGHDW*RNFFFLNLGASFPLLKFGFCFLICSGHGNLSKDHKLKSVGGHRPHSPFRFPYQGRKLAPGTLHQTHGLVKNDKSRPP 915 MA+ VLSECG++PLP I+ PR+ + +F S S + S G SRD +NW L VS PL +PLE ++ FDPGAPPPF LADIRAAIPKHCWVK+PWKS+SY YLNNW+VWPLYW A GTMFWALFVLGHD GHG+ S D KL SV GH HS PY G +++ T HQ HG V+ND+S P Sbjct: 1 MANLVLSECGIRPLPRIYTTPRSNFLSNNNKFRPSLSSSSYKTSSSPLSFGLNSRDGFTRNWALNVSTPLTTPIFEESPLEEDNKQR---------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGAAYLNNWIVWPLYWLAQGTMFWALFVLGHD--------------------------CGHGSFSNDPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHP 217
BLAST of DY260015 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 2.534e-46 Identity = 110/261 (42.15%), Postives = 129/261 (49.43%), Query Frame = 1 Query: 148 MASWVLSECGLKPLPHIFPRPRTGI--NPSKARFLHSKKSLTDLKLPSVKCS---GDFSRDKNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAXGTMFWALFVLGHDW*RNFFFLNLGASFPLLKFGFCFLICSGHGNLSKDHKLKSVGGHRPHSPFRFPYQGRKLAPGTLHQTHGLVKNDKSRPP 915 MAS VLSECG +PLP +P+ T NP K F K LK PS + G +S+ +NW L V+ PL E+ FDPGAPPPF LADIRAAIPKHCWVK+PW SMSY Y NNW++WPLYW A GTMFWALFVLGHD GHG+ S D +L SV GH HS PY G +++ T HQ HG V+ND+S P Sbjct: 1 MASSVLSECGFRPLPRFYPKHTTSFASNP-KPTF----KFNPPLKPPSSLLNSRYGFYSKTRNWALNVATPLTTLQSPSEEDTER--------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVAAYFNNWLLWPLYWFAQGTMFWALFVLGHD--------------------------CGHGSFSNDPRLNSVAGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHP 210
BLAST of DY260015 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 4.629e-40 Identity = 91/205 (44.39%), Postives = 103/205 (50.24%), Query Frame = 1 Query: 316 KNWGLKVSAPLRV-----APLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAXGTMFWALFVLGHDW*RNFFFLNLGASFPLLKFGFCFLICSGHGNLSKDHKLKSVGGHRPHSPFRFPYQGRKLAPGTLHQTHGLVKNDKSRPP 915 +NW L V+ PL V P+E E FDPGAPPPF LADIRAAIPKHCWVK+PWKSMSY YLNNW+VWPLYW A GTMFWALFVLGHD GHG+ S D +L SV GH HS PY G +++ T HQ HG V+ND+S P Sbjct: 17 RNWALNVTTPLTVDSSSSPPIEEEPKTQR--------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWKSMSYVVRELAIVFALAAGAAYLNNWLVWPLYWIAQGTMFWALFVLGHD--------------------------CGHGSFSNDPRLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHP 175
BLAST of DY260015 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.763e-31 Identity = 70/156 (44.87%), Postives = 84/156 (53.85%), Query Frame = 1 Query: 448 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAXGTMFWALFVLGHDW*RNFFFLNLGASFPLLKFGFCFLICSGHGNLSKDHKLKSVGGHRPHSPFRFPYQGRKLAPGTLHQTHGLVKNDKSRPP 915 FDP A PPFK+ DIRAAIPKHCWVK P +SMSY Y+++W +WPLYWAA GT+FWA+FVLGHD GHG+ S L SV GH HS PY G +++ T HQ HG V+ND+S P Sbjct: 26 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALAIAAVYVDSWFLWPLYWAAQGTLFWAIFVLGHD--------------------------CGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVP 155
BLAST of DY260015 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 5.130e-31 Identity = 70/156 (44.87%), Postives = 80/156 (51.28%), Query Frame = 1 Query: 448 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAXGTMFWALFVLGHDW*RNFFFLNLGASFPLLKFGFCFLICSGHGNLSKDHKLKSVGGHRPHSPFRFPYQGRKLAPGTLHQTHGLVKNDKSRPP 915 FDPGAPPPFK+ADIRAAIPKHCW K +S+SY N+W WPLYW A GTMFWALFVLGHD GHG+ S KL S GH HS PY G +++ T HQ HG V+ D+S P Sbjct: 22 FDPGAPPPFKIADIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFNSWFFWPLYWPAQGTMFWALFVLGHD--------------------------CGHGSFSNSSKLNSFVGHILHSLILVPYNGWRISHRTHHQNHGHVEKDESWVP 151
BLAST of DY260015 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 6.700e-31 Identity = 69/156 (44.23%), Postives = 82/156 (52.56%), Query Frame = 1 Query: 448 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAXGTMFWALFVLGHDW*RNFFFLNLGASFPLLKFGFCFLICSGHGNLSKDHKLKSVGGHRPHSPFRFPYQGRKLAPGTLHQTHGLVKNDKSRPP 915 FDP A PPFK+ DIRAAIPKHCWVK P +SMSY Y ++W +WPLYW A GT+FWA+FVLGHD GHG+ S L SV GH HS PY G +++ T HQ HG V+ND+S P Sbjct: 23 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVTRDIFAVAALAMAAVYFDSWFLWPLYWVAQGTLFWAIFVLGHD--------------------------CGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVP 152
BLAST of DY260015 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 7.407e-30 Identity = 66/156 (42.31%), Postives = 83/156 (53.21%), Query Frame = 1 Query: 448 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAXGTMFWALFVLGHDW*RNFFFLNLGASFPLLKFGFCFLICSGHGNLSKDHKLKSVGGHRPHSPFRFPYQGRKLAPGTLHQTHGLVKNDKSRPP 915 FDP APPPF+LA+IR IPKHCWVKDP +S+SY +L++W+ +PLYWA GTMFWA+FVLGHD GHG+ S L +V GH HS PY G +++ T HQ HG V+ D+S P Sbjct: 22 FDPSAPPPFRLAEIRNVIPKHCWVKDPLRSLSYVVRDVIFVATLIGIAIHLDSWLFYPLYWAIQGTMFWAIFVLGHD--------------------------CGHGSFSDSQLLNNVVGHILHSAILVPYHGWRISHKTHHQNHGNVETDESWVP 151 The following BLAST results are available for this feature:
BLAST of DY260015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY260015 ID=DY260015; Name=DY260015; organism=Citrus clementina; type=EST; length=916bpback to top |