DY260038

Overview
NameDY260038
Unique NameDY260038
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length962
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14612 contig Ccv1_Contig14612:2..963. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260038 vs. ExPASy Swiss-Prot
Match: SRPK3_HUMAN (Serine/threonine-protein kinase SRPK3 OS=Homo sapiens GN=SRPK3 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.105e-35
Identity = 74/233 (31.76%), Postives = 107/233 (45.92%), Query Frame = 3
Query:    3 LHRELSIIHTDLKPENVLLL-------SKIDPSKDARKSGVP----LILPTKTDKVVTESSASKDNKSLYGDLTKNQXXXXXXXXXXXXQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERRIDSVVNNESSRGNEVKNTSQGVKGHRRPSRGTRKNLLA-------AVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 647
            LH +  IIHTD+KPEN+LL             + + +++G P     I+ T   +V+T   +    K +     + Q            Q     EA   ++A+      D  S  T  +G S     + S  +     G+  +  + G+     P   +  NLL        A  ++ K+ D GNACW HK FT DIQTRQYR  EVL+G++Y   AD+WS AC+ FELATG
Sbjct:  202 LHTKCKIIHTDIKPENILLCVGDAYIRRLAAEATEWQQAGAPPPSRSIVSTAPQEVLTGKLSKNKRKKMRRK--RKQQKRLLEERLRDLQRLEAMEA--ATQAEDSGLRLDGGSGSTSSSGFSGS---LFSPASCSILSGSSNQRETGGLLSPSTPFGAS--NLLVNPLEPQNADKIKIKIADLGNACWVHKHFTEDIQTRQYRAVEVLIGAEYGPPADIWSTACMAFELATG 425          

HSP 2 Score: 74.7146 bits (182), Expect = 3.105e-35
Identity = 40/91 (43.96%), Postives = 54/91 (59.34%), Query Frame = 1
Query:  643 QDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLLFWPMNKVLVEKYHFNERNAKEMAEFLGSKT*FPFLKRKPIAPQCPHPSL 915
            +DH+A ++ELLG +P   AL GRYSR+FFNR G+LRHI  L  W + +VL+EKY +    A + + FL     +   KR   A    HP L
Sbjct:  441 EDHIAHIVELLGDIPPAFALSGRYSREFFNRRGELRHIHNLKHWGLYEVLMEKYEWPLEQATQFSAFLLPMMEYIPEKRASAADCLQHPWL 531          
BLAST of DY260038 vs. ExPASy Swiss-Prot
Match: SRPK2_HUMAN (Serine/threonine-protein kinase SRPK2 OS=Homo sapiens GN=SRPK2 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.563e-34
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 3
Query:  477 VQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 647
            ++ K+ D GNACW HK FT DIQTRQYR  EVL+G+ YST AD+WS AC+ FELATG
Sbjct:  524 IRVKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAFELATG 580          

HSP 2 Score: 78.9518 bits (193), Expect = 2.563e-34
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 1
Query:  643 QDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLLFWPMNKVLVEKYHFNERNAKEMAEFLGSKT*FPFLKRKPIAPQCPHPSL 915
            +DH+A ++ELLG +PR  AL G+YSR+FFNR G+LRHI +L  W +  VLVEKY +   +A +  +FL         KR      C HP L
Sbjct:  596 EDHIAHIIELLGSIPRHFALSGKYSREFFNRRGELRHITKLKPWSLFDVLVEKYGWPHEDAAQFTDFLIPMLEMVPEKRASAGCLCRHPWL 686          
BLAST of DY260038 vs. ExPASy Swiss-Prot
Match: SRPK2_MOUSE (Serine/threonine-protein kinase SRPK2 OS=Mus musculus GN=Srpk2 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 9.607e-34
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 3
Query:  477 VQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 647
            ++ K+ D GNACW HK FT DIQTRQYR  EVL+G+ YST AD+WS AC+ FELATG
Sbjct:  517 IRVKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAFELATG 573          

HSP 2 Score: 77.0258 bits (188), Expect = 9.607e-34
Identity = 35/68 (51.47%), Postives = 49/68 (72.06%), Query Frame = 1
Query:  643 QDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLLFWPMNKVLVEKYHFNERNAKEMAEFL 846
            +DH+A ++ELLG +PR  AL G+YSR+FFNR G+LRHI +L  W +  VLVEKY +   +A +  +FL
Sbjct:  589 EDHIAHIIELLGSIPRHFALSGKYSREFFNRRGELRHITKLKPWSLFDVLVEKYGWPHEDAAQFTDFL 656          
BLAST of DY260038 vs. ExPASy Swiss-Prot
Match: SRPK1_PONAB (Serine/threonine-protein kinase SRPK1 OS=Pongo abelii GN=SRPK1 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.123e-33
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 3
Query:  468 AVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 647
            A  ++ K+ D GNACW HK FT DIQTRQYR  EVL+GS Y+T AD+WS AC+ FELATG
Sbjct:  488 AEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATG 547          

HSP 2 Score: 76.2554 bits (186), Expect = 2.123e-33
Identity = 32/68 (47.06%), Postives = 51/68 (75.00%), Query Frame = 1
Query:  643 QDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLLFWPMNKVLVEKYHFNERNAKEMAEFL 846
            +DH+AL++ELLG +PRK+ + G+YS++FF + GDL+HI +L  W + +VLVEKY +++  A    +FL
Sbjct:  563 EDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFL 630          
BLAST of DY260038 vs. ExPASy Swiss-Prot
Match: SRPK1_HUMAN (Serine/threonine-protein kinase SRPK1 OS=Homo sapiens GN=SRPK1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.123e-33
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 3
Query:  468 AVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 647
            A  ++ K+ D GNACW HK FT DIQTRQYR  EVL+GS Y+T AD+WS AC+ FELATG
Sbjct:  488 AEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATG 547          

HSP 2 Score: 76.2554 bits (186), Expect = 2.123e-33
Identity = 32/68 (47.06%), Postives = 51/68 (75.00%), Query Frame = 1
Query:  643 QDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLLFWPMNKVLVEKYHFNERNAKEMAEFL 846
            +DH+AL++ELLG +PRK+ + G+YS++FF + GDL+HI +L  W + +VLVEKY +++  A    +FL
Sbjct:  563 EDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFL 630          
BLAST of DY260038 vs. ExPASy Swiss-Prot
Match: SRPK3_MOUSE (Serine/threonine-protein kinase SRPK3 OS=Mus musculus GN=Srpk3 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.986e-32
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 3
Query:  477 VQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 647
            ++ K+ D GNACW HK FT DIQTRQYR  EVL+G++Y   AD+WS AC+ FELATG
Sbjct:  401 IKIKIADLGNACWVHKHFTEDIQTRQYRAVEVLIGAEYGPPADIWSTACMAFELATG 457          

HSP 2 Score: 73.9442 bits (180), Expect = 2.986e-32
Identity = 40/91 (43.96%), Postives = 54/91 (59.34%), Query Frame = 1
Query:  643 QDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLLFWPMNKVLVEKYHFNERNAKEMAEFLGSKT*FPFLKRKPIAPQCPHPSL 915
            +DH+A ++ELLG +P   AL GRYSR+FFNR G+LRHI  L  W + +VL+EKY +    A + + FL     +   KR   A    HP L
Sbjct:  473 EDHIAHIVELLGDIPPAFALSGRYSREFFNRRGELRHIPNLKHWGLYEVLMEKYEWPLEQATQFSAFLLPMMEYIPEKRASAADCLQHPWL 563          
BLAST of DY260038 vs. ExPASy Swiss-Prot
Match: SKY1_DICDI (Probable serine/threonine-protein kinase sky1 OS=Dictyostelium discoideum GN=sky1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.989e-28
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 3
Query:  480 QCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 647
            + +LVD GNACWT K FT+DIQTRQYR PE ++ +K+ T  D+WS AC+ FELATG
Sbjct:  486 RAQLVDLGNACWTDKHFTDDIQTRQYRAPEAIVKAKWGTPVDIWSAACMAFELATG 541          

HSP 2 Score: 63.1586 bits (152), Expect = 3.989e-28
Identity = 36/68 (52.94%), Postives = 42/68 (61.76%), Query Frame = 1
Query:  646 DHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLL-FWPMNKVLVEKYHFNERNAKEMAEFL 846
            DHLALM+ELLG  PR I  GG  SR +F   GDLR I  L   WP+  VL EKY F+ + AK+   FL
Sbjct:  558 DHLALMIELLGKPPRFIFAGGDESRVYFTHKGDLRKIPDLSDQWPLFSVLTEKYKFSIQEAKDFEAFL 625          
BLAST of DY260038 vs. ExPASy Swiss-Prot
Match: DSK1_SCHPO (Protein kinase dsk1 OS=Schizosaccharomyces pombe GN=dsk1 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 5.499e-23
Identity = 72/216 (33.33%), Postives = 97/216 (44.91%), Query Frame = 3
Query:    3 LHRELSIIHTDLKPENVLLLSKIDPSKDARKSGVPLILPTKTDKVVTESSASKDNKSLYGDLTKNQXXXXXXXXXXXXQGCAGTEAFDESEADSK-PSSPDNFSVDTIPNGVSVEERRIDSVVNNESSRGNEVKNTSQGVKGHRRPSRGTRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 647
            LHRE  IIHTDLKPENVL+    D  +            T +    T SS +++N          +            +  A     +   A    PSSP   ++   P+     E  +  +   +S + N   N+      +     G   +      +  K+ D GNACWT K FTND+QTRQYR PEV+LG ++  SAD WSFACI FEL TG
Sbjct:  204 LHRECGIIHTDLKPENVLICIDQDALQHIEAPAT-----TSSPTSNTSSSKTRNNTGYTAKAPIIKRGQSVDNSAQERKTFAKNPTKNSKPAGQVIPSSPFTSTLSRFPS----LEGAVSEISLRDSQKHNSHPNSPFSSGDNSLILDGVNGSQEPVPKITVKIADLGNACWTRKHFTNDVQTRQYRSPEVILGCRWGASADCWSFACIIFELLTG 410          

HSP 2 Score: 84.7297 bits (208), Expect = 8.504e-16
Identity = 42/113 (37.17%), Postives = 66/113 (58.41%), Query Frame = 1
Query:  604 IYGPLLAYALSWRQDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLLFWPMNKVLVEKYHFNERNAKEMAEFLGSKT*FPFLKRKPIAPQCPHPSLGRMQDPPLR 942
            ++ P    + S   DH+A ++ELL   P+++AL G++SRD FNR G+LR+I +L FWP+  VL +KYHF+   A+++++FL     F   KR         P L  + DP  +
Sbjct:  413 LFDPRNGNSYSKEDDHIAQIIELLVNYPKQMALSGKHSRDLFNRRGELRNIHKLKFWPLKDVLEQKYHFSAELAQQISDFLSPMLCFDPAKRTNAGYMSNSPWLREVADPTFK 525          
BLAST of DY260038 vs. ExPASy Swiss-Prot
Match: SRPK1_MOUSE (Serine/threonine-protein kinase SRPK1 OS=Mus musculus GN=Srpk1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 2.024e-17
Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = 3
Query:  468 AVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGSLGTDDGASRDDATQD 695
            A  +Q K+ D GNACW HK FT DIQTRQYR  EVL+GS Y+T AD+WS AC+ FELATG     +  S +D T+D
Sbjct:  481 AEKLQVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDY-LFEPHSGEDYTRD 555          

HSP 2 Score: 75.0998 bits (183), Expect = 6.738e-13
Identity = 32/68 (47.06%), Postives = 50/68 (73.53%), Query Frame = 1
Query:  643 QDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLLFWPMNKVLVEKYHFNERNAKEMAEFL 846
            +DH+AL++ELLG +PRK+ + G+YS++FF + GDL+HI +L  W + +VLVEKY + +  A    +FL
Sbjct:  556 EDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLLEVLVEKYEWPQEEAAGFTDFL 623          
BLAST of DY260038 vs. ExPASy Swiss-Prot
Match: SPK1_CAEEL (Serine/threonine-protein kinase spk-1 OS=Caenorhabditis elegans GN=spk-1 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 2.238e-16
Identity = 81/280 (28.93%), Postives = 115/280 (41.07%), Query Frame = 3
Query:    3 LHRELSIIHTDLKPENVLLLSKIDPSKD-------ARKSGVPL---ILPTKTDKVV--TESSASKDNKSLYGDLTKNQXXXXXXXXXXXXQGCAGT--EAFDESEADSKPSSPDNFSVDTIPNGVSVEERRIDSVVNNESSRGN-EVKNT---------------------------------SQGVKGHRRPSRGTRKNLLAAV-DVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGSL----GTDDGASRDD 683
            +H +  IIHTD+KPENVL+    +  K        ARK  + +    + T  D +V   + + +K+ K       K Q             G  G   +A    EA +     +NF      N   VE+  ++  VN   +R   E+++                                  SQ   G   P+     N+     D+  K+ D GNACW +  +T+DIQTRQYR  EVL+GS Y   AD+WS AC+ FELATG         D  SRD+
Sbjct:  545 MHEKCGIIHTDIKPENVLITMSREEIKIMAQHAVVARKMNMKMSGSAVSTAPDHLVKMAQENMTKNKKKKMKKKAKKQREKLEAELA----GLEGLKMDANGLQEAYNNAPELENF------NASQVEDVTMEDTVNENGNRNKVEIRSPDRFDRTTLTPFSDPESKFGDLASPSAEYLSSPMSQLPPGGILPAPPVGPNIGDPYCDIDVKIADLGNACWVNHHYTDDIQTRQYRALEVLIGSGYGPPADIWSTACMAFELATGDYLFEPHQGDNYSRDE 814          
The following BLAST results are available for this feature:
BLAST of DY260038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
SRPK3_HUMAN3.105e-3531.76Serine/threonine-protein kinase SRPK3 OS=Homo sapi... [more]
SRPK2_HUMAN2.563e-3466.67Serine/threonine-protein kinase SRPK2 OS=Homo sapi... [more]
SRPK2_MOUSE9.607e-3466.67Serine/threonine-protein kinase SRPK2 OS=Mus muscu... [more]
SRPK1_PONAB2.123e-3365.00Serine/threonine-protein kinase SRPK1 OS=Pongo abe... [more]
SRPK1_HUMAN2.123e-3365.00Serine/threonine-protein kinase SRPK1 OS=Homo sapi... [more]
SRPK3_MOUSE2.986e-3263.16Serine/threonine-protein kinase SRPK3 OS=Mus muscu... [more]
SKY1_DICDI3.989e-2862.50Probable serine/threonine-protein kinase sky1 OS=D... [more]
DSK1_SCHPO5.499e-2333.33Protein kinase dsk1 OS=Schizosaccharomyces pombe G... [more]
SRPK1_MOUSE2.024e-1757.89Serine/threonine-protein kinase SRPK1 OS=Mus muscu... [more]
SPK1_CAEEL2.238e-1628.93Serine/threonine-protein kinase spk-1 OS=Caenorhab... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YA20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260038 ID=DY260038; Name=DY260038; organism=Citrus clementina; type=EST; length=962bp
ATTTGCATCGCGAGCTTTCAATTATTCACACTGATTTGAAGCCAGAGAAT
GTGTTGCTCTTGTCAAAAATTGATCCATCTAAAGATGCCCGCAAATCAGG
TGTTCCCCTCATCCTTCCTACTAAAACGGATAAAGTTGTGACAGAATCTA
GTGCTTCAAAAGACAATAAGAGTCTTTATGGGGATCTGACCAAGAACCAA
AAAAAGAAGGTAAAAAAAAAGGCCAAGAAGGCTGCTCAGGGTTGTGCAGG
GACTGAAGCATTTGATGAAAGTGAAGCAGACTCCAAACCATCTAGTCCTG
ATAATTTTAGTGTCGATACAATACCAAATGGGGTTTCTGTTGAAGAACGG
CGGATTGATTCTGTGGTTAACAATGAATCATCCAGGGGTAATGAAGTAAA
AAATACTAGCCAAGGAGTTAAGGGTCATAGAAGGCCAAGCCGTGGCACGA
GGAAAAATCTTTTGGCTGCGGTTGATGTGCAGTGTAAATTGGTTGATTTT
GGAAATGCTTGTTGGACACACAAACAATTTACAAATGACATTCAGACCAG
GCAGTATAGATGTCCCGAGGTTCTTCTTGGATCTAAATACTCCACTTCAG
CAGATCTATGGTCCTTTGCTTGCATATGCTTTGAGCTGGCGACAGGATCA
CTTGGCACTGATGATGGAGCTTCTCGGGATGATGCCACGCAAGATTGCAT
TGGGTGGTCGCTATTCCCGTGATTTCTTCAACAGACATGGGGATTTGAGG
CACATCCGTCGTCTACTTTTTTGGCCTATGAATAAGGTCCTTGTAGAGAA
ATACCACTTTAACGAGCGAAATGCAAAGGAAATGGCTGAATTCCTTGGTT
CCAAAACTTGATTTCCTTTCCTGAAAAGAAAACCAATTGCACCCCAATGT
CCCCATCCATCCCTGGGAAGAATGCAGGACCCTCCACTGCGGTGACCCCT
TCATGGGGTGGC
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