DY260121

Overview
NameDY260121
Unique NameDY260121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1032
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1422 contig Ccv1_Contig1422:1..1033. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260121 vs. ExPASy Swiss-Prot
Match: SAR1A_ARATH (GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 7.315e-85
Identity = 159/194 (81.96%), Postives = 167/194 (86.08%), Query Frame = 1
Query:   82 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVPPKWVTGKGFKWLSQYLK 663
            MF+ DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESK+ELDALLSDESLA+VPFLILGNKIDIPYAASEDELRY LGL+NFTTGKGKVNL DSNVRPLEVFMCSIV  K   G+GFKW+SQY+K
Sbjct:    1 MFMIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLASVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIV-RKMGYGEGFKWVSQYIK 193          
BLAST of DY260121 vs. ExPASy Swiss-Prot
Match: SAR1B_ARATH (GTP-binding protein SAR1B OS=Arabidopsis thaliana GN=SAR1B PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 2.780e-84
Identity = 161/193 (83.42%), Postives = 164/193 (84.97%), Query Frame = 1
Query:   82 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVPPKWVTGKGFKWLSQYL 660
            MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESKRELDALLSDE+LA VPFLILGNKIDIPYAASEDELRY LGLTNFTTGKGKV L DS VRPLEVFMCSIV  K   G+GFKWLSQY+
Sbjct:    1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKRELDALLSDEALATVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVTLGDSGVRPLEVFMCSIV-RKMGYGEGFKWLSQYI 192          
BLAST of DY260121 vs. ExPASy Swiss-Prot
Match: SAR1A_BRACM (GTP-binding protein SAR1A OS=Brassica campestris GN=SAR1A PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 4.741e-84
Identity = 159/194 (81.96%), Postives = 166/194 (85.57%), Query Frame = 1
Query:   82 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVPPKWVTGKGFKWLSQYLK 663
            MF+ DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESK+ELDALLSDESLA VPFLILGNKIDIPYAASEDELRY LGL+NFTTGKGKV+LV SNVRPLEVFMCSIV  K   G+GFKWLSQY+K
Sbjct:    1 MFVIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVDLVGSNVRPLEVFMCSIV-RKMGYGEGFKWLSQYIK 193          
BLAST of DY260121 vs. ExPASy Swiss-Prot
Match: SAR1B_BRACM (GTP-binding protein SAR1B OS=Brassica campestris GN=SAR1B PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 1.093e-80
Identity = 156/195 (80.00%), Postives = 162/195 (83.08%), Query Frame = 1
Query:   82 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLV--DSNVRPLEVFMCSIVPPKWVTGKGFKWLSQYL 660
            MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW                   ERF+ESK+ELDALLSD++LA VPFLILGNKID PYAASEDELRY LGLTNFTTGKGKV     DS VRPLEVFMCSIV  K   G+GFKWLSQY+
Sbjct:    1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFSESKKELDALLSDDALATVPFLILGNKIDNPYAASEDELRYHLGLTNFTTGKGKVTTAGGDSGVRPLEVFMCSIV-RKMGYGEGFKWLSQYI 194          
BLAST of DY260121 vs. ExPASy Swiss-Prot
Match: SAR2_SOLLC (GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 4.592e-79
Identity = 148/194 (76.29%), Postives = 159/194 (81.96%), Query Frame = 1
Query:   82 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVPPKWVTGKGFKWLSQYLK 663
            MFL DWFYG+LASLGLWQK+AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIG IKFKAFDLGGHQIARRVW                   ERF E+K+ELD LLSDESL NVPFLILGNKIDIPYAASEDELRY LGLT  TTGKG +NL  +NVRP+EVFMCSIV  K   G+GFKW+SQY+K
Sbjct:    1 MFLVDWFYGVLASLGLWQKDAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGNIKFKAFDLGGHQIARRVWRDYYAKVDAVVYLVDANDRERFPEAKKELDGLLSDESLTNVPFLILGNKIDIPYAASEDELRYHLGLTGVTTGKGNINLAGTNVRPIEVFMCSIV-RKMGYGEGFKWMSQYIK 193          
BLAST of DY260121 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 2.143e-60
Identity = 129/199 (64.82%), Postives = 144/199 (72.36%), Query Frame = 1
Query:   82 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGN---KIDIPYAA-SEDELRYPLGLTNFT-TGKGKVNLVDSNVRPLEVFMCSIVPPKWVTGKGFKWLSQYLK 663
            MFL DWFYGILA+LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESK+ELDALLS  S     FL L N   +I+ P     +   RY +G    +   +GKVNL DSNVRP+EVFMCSIV  +   G+GF+W+SQY+K
Sbjct:    1 MFLVDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLSGWSSLAHCFLFLDNWVTRIEHPICCLRKMNWRYHMGANGASPLARGKVNLADSNVRPVEVFMCSIV-RQMGYGEGFRWMSQYIK 198          
BLAST of DY260121 vs. ExPASy Swiss-Prot
Match: SAR1_USTMA (Small COPII coat GTPase SAR1 OS=Ustilago maydis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.101e-56
Identity = 116/193 (60.10%), Postives = 141/193 (73.06%), Query Frame = 1
Query:   82 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVPPKWVTGKGFKWLSQYL 660
            MF+ +WF+ ILA LGL  K AKILFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG++KF  +DLGGHQ ARR+W                   ERFAE++ ELDALLS E L++VPFLILGNKID P A SE+ELR  +GL   TTGKGKV L D  +RP+E+FMCS+V  +   G+GF+W+SQY+
Sbjct:    1 MFIINWFWDILAQLGLAHKNAKILFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGQVKFTTYDLGGHQQARRLWKDYFPEVDGIVFLVDTQDHERFAEARAELDALLSIEELSSVPFLILGNKIDAPGAVSEEELRQAIGLYQ-TTGKGKVPLKD--IRPIEIFMCSVVMRQGY-GEGFRWISQYI 189          
BLAST of DY260121 vs. ExPASy Swiss-Prot
Match: SAR1_CRYNE (Small COPII coat GTPase SAR1 OS=Cryptococcus neoformans GN=SAR1 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 3.203e-56
Identity = 117/193 (60.62%), Postives = 140/193 (72.54%), Query Frame = 1
Query:   82 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVPPKWVTGKGFKWLSQYL 660
            MF+ +WF+ +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG +KF  +DLGGH  ARR+W                   ERFAESK ELD+LLS ESLA VPFLILGNKID   A SE++LR+ LGL   TTGKGK+ L D  +RP+EVFMCS+V  +   G+GF+WLSQY+
Sbjct:    1 MFIINWFWDVLASLGLMNKSAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGNVKFTTYDLGGHIQARRLWRDYFPEVDGIVFLVDSADAERFAESKAELDSLLSIESLAQVPFLILGNKIDAYGAVSEEQLRHELGLYQ-TTGKGKIPLRD--IRPIEVFMCSVVMRQGY-GEGFRWLSQYI 189          
BLAST of DY260121 vs. ExPASy Swiss-Prot
Match: SAR1_ASPFU (Small COPII coat GTPase sar1 OS=Aspergillus fumigatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 7.135e-56
Identity = 118/193 (61.14%), Postives = 137/193 (70.98%), Query Frame = 1
Query:   82 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVPPKWVTGKGFKWLSQYL 660
            M++ +WFY ILASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK ELDALL+ E LA VPFLILGNKID P A SEDELR+ LGL   TTGKGKV L    +RP+EVFMCS+V  +   G+G +WLSQY+
Sbjct:    1 MWIINWFYDILASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGY-GEGIRWLSQYV 189          
BLAST of DY260121 vs. ExPASy Swiss-Prot
Match: SAR1_NEOFI (Small COPII coat GTPase sar1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sar1 PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 9.318e-56
Identity = 117/193 (60.62%), Postives = 137/193 (70.98%), Query Frame = 1
Query:   82 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYPLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVPPKWVTGKGFKWLSQYL 660
            M++ +WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK ELDALL+ E LA VPFLILGNKID P A SEDELR+ LGL   TTGKGKV L    +RP+EVFMCS+V  +   G+G +WLSQY+
Sbjct:    1 MWIINWFYDVLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGY-GEGIRWLSQYV 189          
The following BLAST results are available for this feature:
BLAST of DY260121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
SAR1A_ARATH7.315e-8581.96GTP-binding protein SAR1A OS=Arabidopsis thaliana ... [more]
SAR1B_ARATH2.780e-8483.42GTP-binding protein SAR1B OS=Arabidopsis thaliana ... [more]
SAR1A_BRACM4.741e-8481.96GTP-binding protein SAR1A OS=Brassica campestris G... [more]
SAR1B_BRACM1.093e-8080.00GTP-binding protein SAR1B OS=Brassica campestris G... [more]
SAR2_SOLLC4.592e-7976.29GTP-binding protein SAR2 OS=Solanum lycopersicum G... [more]
SAR1_TOBAC2.143e-6064.82GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]
SAR1_USTMA1.101e-5660.10Small COPII coat GTPase SAR1 OS=Ustilago maydis GN... [more]
SAR1_CRYNE3.203e-5660.62Small COPII coat GTPase SAR1 OS=Cryptococcus neofo... [more]
SAR1_ASPFU7.135e-5661.14Small COPII coat GTPase sar1 OS=Aspergillus fumiga... [more]
SAR1_NEOFI9.318e-5660.62Small COPII coat GTPase sar1 OS=Neosartorya fische... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YG05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260121 ID=DY260121; Name=DY260121; organism=Citrus clementina; type=EST; length=1032bp
CTCAAAGATTCCTCTTTATTTCAGCCAAAATTCGATCTTTTTGATAGATT
CATTATAAATAAGGAGTAATAAAAGAAACCCATGTTTTTGTTTGATTGGT
TTTATGGGATTCTTGCATCTCTTGGGCTCTGGCAAAAAGAGGCCAAGATC
TTGTTTCTCGGCCTCGATAATGCCGGTAAAACGACGCTGCTTCATATGTT
GAAAGATGAGAGATTAGTGCAACATCAACCAACACAACATCCCACTTCGG
AGGAACTGAGTATTGGGAAAATCAAGTTTAAGGCTTTTGATTTGGGAGGG
CATCAGATTGCTCGTAGAGTTTGGAAAGATTACTACGCCAAGGTTGATGC
GGTTGTGTACCTGGTAGATGCGTATGACAAGGAGAGGTTTGCTGAGTCGA
AAAGGGAGCTTGATGCCCTTCTTTCAGATGAATCCTTGGCCAATGTTCCA
TTCCTTATTTTGGGCAACAAAATTGATATCCCATATGCTGCGTCAGAAGA
TGAGTTGCGATACCCCCTTGGACTGACCAACTTCACCACTGGCAAGGGTA
AGGTGAATCTGGTTGATTCCAACGTTCGCCCCCTTGAGGTATTCATGTGC
AGCATTGTCCCCCCAAAATGGGTTACCGGAAAGGGATTTAAGTGGCTGTC
CCAGTACCTCAAGTAGACCAAGAACTGGAATTCGTTCCGGTTCCTCCCTT
ATATGTTCGTTCCCCAATGAATTGAGGTTGATGCCTTTCCCCTTACGAAC
GGAAGATTCCTGTATTTCCCCATTTCCCCCCAAATGACCAACCTGGCAAC
TCCCATGCCATTTCGAAAACTTTAAAAAAAAAAAAAAAAAAAAAACCCCA
CTTTTCTTGACCCAAGTGGGCTTTTAAAAAAAAACATAGCTTTCACATTT
TCGTTCCACCGCAACCGGGGCCCTAGCCCCCCACAACAAAACCACTTTAT
TTCCCCTCCCACCCCGAACCCCCCAAAACCTCGTGCCTCTATCTCAAGGG
ATCTATACGTGTTTTCTTGGAGAATTCCGCGC
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