DY260135

Overview
NameDY260135
Unique NameDY260135
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1160
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260135_ssr431 microsatellite DY260135_ssr431:431..448. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260135 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.811e-50
Identity = 90/109 (82.57%), Postives = 101/109 (92.66%), Query Frame = 1
Query:    1 VVPVPYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQFR 327
            +VPV YRRVPC RRGGIRFTINGHSYFNLVLITNVGGAGDVH+ +IKGSRT WQ MSRNWGQNWQSN+YLNGQ+LSF+VTTSDGRTV S+N APAGWS+G+T++G QFR
Sbjct:  141 IVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQFR 249          
BLAST of DY260135 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 8.988e-50
Identity = 90/109 (82.57%), Postives = 100/109 (91.74%), Query Frame = 1
Query:    1 VVPVPYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQFR 327
            +VPV YRRVPC RRGGIRFTINGHSYFNLVLITNVGGAGDVH+  +KGSRTGWQ MSRNWGQNWQSN+YLNGQSLSF+VTTSDG+T+ S NVA AGWSFG+T++GAQ R
Sbjct:  142 IVPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGWSFGQTFTGAQLR 250          
BLAST of DY260135 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 1.695e-48
Identity = 88/109 (80.73%), Postives = 98/109 (89.91%), Query Frame = 1
Query:    1 VVPVPYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQFR 327
            VVPV YRRVPC RRGGIRFTINGHSYFNLVL+TNVGGAGDVH+V++KGSRT WQ MSRNWGQNWQSN  LNGQ+LSF+VT SDGRTV S N+APA WSFG+T++G QFR
Sbjct:  145 VVPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASWSFGQTFTGRQFR 253          
BLAST of DY260135 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 2.448e-47
Identity = 85/108 (78.70%), Postives = 95/108 (87.96%), Query Frame = 1
Query:    1 VVPVPYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQF 324
            +VPV YRRVPC ++GGIRFTINGHSYFNLVL+TNV G GDV +VSIKGS TGWQPMSRNWGQNWQSN+YL+GQSLSF+V  SDGRTVTS NV PAGW FG+T+ G QF
Sbjct:  144 IVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGPGDVQSVSIKGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVSDGRTVTSNNVVPAGWQFGQTFEGGQF 251          
BLAST of DY260135 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 4.175e-47
Identity = 87/109 (79.82%), Postives = 97/109 (88.99%), Query Frame = 1
Query:    1 VVPVPYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQFR 327
            ++PV YRRV C R GGIRFTINGHSYFNLVL+TNVGGAGDVH+VS+KGSRT WQ MSRNWGQNWQSN+YLNGQSLSF VTTSD R+V S+NVAP  WSFG+TY+G QFR
Sbjct:  146 IIPVMYRRVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKGSRTKWQLMSRNWGQNWQSNSYLNGQSLSFVVTTSDRRSVVSFNVAPPTWSFGQTYTGGQFR 254          
BLAST of DY260135 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 9.301e-47
Identity = 83/108 (76.85%), Postives = 96/108 (88.89%), Query Frame = 1
Query:    1 VVPVPYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQF 324
            +VPV +RRVPC ++GG+RFT+NGHSYFNLVL+TNV GAGDV +VSIKGSRTGWQPMSRNWGQNWQSN +L+GQSLSF+VT SDGRTVTS NVA  GW FG+T+ G QF
Sbjct:  139 IVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEGGQF 246          
BLAST of DY260135 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 9.301e-47
Identity = 83/108 (76.85%), Postives = 96/108 (88.89%), Query Frame = 1
Query:    1 VVPVPYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQF 324
            +VPV +RRVPC ++GG+RFT+NGHSYFNLVL+TNV GAGDV +VSIKGSRTGWQPMSRNWGQNWQSN +L+GQSLSF+VT SDGRTVTS NVA  GW FG+T+ G QF
Sbjct:  139 IVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEGGQF 246          
BLAST of DY260135 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.754e-45
Identity = 84/109 (77.06%), Postives = 97/109 (88.99%), Query Frame = 1
Query:    1 VVPVPYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRT-GWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQF 324
            +VPV +RRVPC ++GGIRFTINGHSYFNLVLI+NVGGAGDVHAVSIKGS+T  WQ MSRNWGQNWQSN+Y+N QSLSF+VTTSDGRT+ S +VAP+ W FG+TY G QF
Sbjct:  145 IVPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNWQFGQTYQGGQF 253          
BLAST of DY260135 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 7.370e-44
Identity = 84/109 (77.06%), Postives = 92/109 (84.40%), Query Frame = 1
Query:    1 VVPVPYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQFR 327
            VVPV YRRV C R+GGIRFTINGHSYFNLVLITNV GAGDV +VSIKG+ T WQ MSRNWGQNWQSN  L+GQ+LSF+VTTSDGRTV S N  P  WSFG+TY+G QFR
Sbjct:  144 VVPVQYRRVACRRKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTSDGRTVISNNATPRNWSFGQTYTGKQFR 252          
BLAST of DY260135 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 7.370e-44
Identity = 82/108 (75.93%), Postives = 92/108 (85.19%), Query Frame = 1
Query:    1 VVPVPYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQF 324
            VVPV YRRV C ++GGIRFTI GHSYFNLVL+TNVGGAGDV AVS+KGSR+GWQ MS NWG NWQ+   L+GQ LSF VT SDGRTVTS NVAP+GWSFG+T+SG QF
Sbjct:  141 VVPVQYRRVACAKQGGIRFTITGHSYFNLVLVTNVGGAGDVTAVSVKGSRSGWQAMSHNWGANWQNGANLDGQPLSFRVTASDGRTVTSDNVAPSGWSFGQTFSGGQF 248          
The following BLAST results are available for this feature:
BLAST of DY260135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
EXP10_ARATH1.811e-5082.57Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA1_ARATH8.988e-5082.57Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP15_ARATH1.695e-4880.73Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXPA2_ORYSJ2.448e-4778.70Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA5_ARATH4.175e-4779.82Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXPA4_ORYSJ9.301e-4776.85Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI9.301e-4776.85Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA8_ARATH1.754e-4577.06Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXP14_ARATH7.370e-4477.06Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXP11_ORYSJ7.370e-4475.93Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YG20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260135 ID=DY260135; Name=DY260135; organism=Citrus clementina; type=EST; length=1160bp
GTTGTCCCTGTCCCTTACAGGAGGGTACCCTGCGGAAGAAGGGGAGGCAT
CAGGTTCACAATCAATGGCCATTCCTACTTCAACCTAGTGTTGATCACCA
ACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAGGATCTAGA
ACTGGCTGGCAGCCAATGTCAAGAAACTGGGGCCAAAACTGGCAAAGCAA
CACTTATCTCAATGGCCAAAGCCTGTCATTTGAGGTCACCACAAGCGATG
GCCGTACTGTGACTTCCTACAATGTTGCCCCTGCTGGCTGGTCCTTTGGC
CGAACTTACTCCGGTGCTCAATTCCGCTAGAGCCACCAAGACCATTAGAG
ATTGGGTTTTAACACCTTTTTTAGCTATATATTCGTGTACTAAGTAGTAT
ATTTTAGTATGAAATTTTAGCATACTAGGGTATATATATATATATATAAT
ATAGAAGTAGCTATGTGGCTAGTTTTTGGCTTCCAGGGTCAAAAATGAAA
AAAAAGGGCTTATTTTAAAATGGCTTATTTTTTTCATTTTCAATTGATTT
TTATGGTTGCGTGGGGTGTCTAATTATGGGATCCTCTTATTATCCTGGGG
ATCCCTTTTTTACCTTTCTTTTTGGGGGTTTCTGTTGAAGTGCACCAGAT
GGCTGAGGTGGAAATTTTTCCCCCCCCCCTTTGTGCTTGAAATACCTGCC
TCCTTTTTTTGATGCCTCCTTGGAATTGCCTGGCCCAAAAACACTTTTTG
GGCGTGCAAGTTTAATTTGAAACCCCCAAATTTGGCTGAATATTATTATG
TCCTTTGGATGAAATGGGCAAATTTTTACCCAAATTGGAGGGGTAATTTT
CCCTTTCCTTTTATTAATTAATCCACCTAAAGTCCCCCCCTTATTAAAAA
AAAAAAAAAAAAAAAACCCCATTTTCCCTTCAAAAGGGTGCATATTAAAA
AAGACCTTGCTTTCCCATTTTTTTTCCACCCAAACGGCCCCATATCCTCC
CAAAAAAATCCATTCTTTTCCCCCCCCCCCCCAATCCCCCCCCAAAGCGG
GTGCCAAAAACAACGCGTGCCCCACCCGCTTTTCCCCCCGGCCACCCCGC
GCCCCCGGGCTCACCAACCCTCCCACATTGCCCTCCTCCCCCCCAAACAA
AAAACAAACC
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