DY260165

Overview
NameDY260165
Unique NameDY260165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1111
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260165_ssr670 microsatellite DY260165_ssr670:670..681. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1439 contig Ccv1_Contig1439:1..1111. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260165 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.583e-22
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 2
Query:   74 MSDTCPNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 271
            MSDTC NCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of DY260165 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.916e-17
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 2
Query:   83 TCPNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCGS 274
            TC NCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of DY260165 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.502e-17
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 2
Query:   74 MSDTCPNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTC 268
            MSD C NCDCAD SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of DY260165 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 6.162e-16
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 2
Query:   74 MSDTCPNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTC 268
            MS  C NCDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of DY260165 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.048e-16
Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = 2
Query:   74 MSDTCPNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 271
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of DY260165 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.589e-14
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 2
Query:   74 MSDTCPNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 271
            MSD C NCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DY260165 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.589e-14
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 2
Query:   74 MSDTCPNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 271
            MSD C NCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DY260165 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.423e-12
Identity = 32/66 (48.48%), Postives = 40/66 (60.61%), Query Frame = 2
Query:   74 MSDTCPNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 271
            MSD C NCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of DY260165 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 9.208e-12
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 2
Query:   74 MSDTCPNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 271
            MSD C +CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of DY260165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA2.583e-2268.18Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC1.916e-1759.38Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE2.502e-1766.15Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV6.162e-1658.46Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO8.048e-1659.09Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ2.589e-1453.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI2.589e-1453.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ2.423e-1248.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI9.208e-1246.97Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YI12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260165 ID=DY260165; Name=DY260165; organism=Citrus clementina; type=EST; length=1111bp
AGCAAAGCCACTTTTCTACAATAAAGAGCCCTCTATTTCCAGTTTTAAGT
TCCAAGTTCTAAGCTCAATCAACATGTCGGACACCTGCCCCAACTGCGAC
TGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCTATGCTGCTGA
CTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGTTGTTGTCATGGACG
TTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTGCGGCCCCACCTGCGCT
TGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAACACATGCAGCAA
AAAATAAGAAGCTGCAAGTGTGCCCTAAATATTGTGGGGGTTAAGAATAA
TGTAAGGGTGATTAAAAAAAAAGAAAAATTCCCCACTTCGTTTTTATGAT
GGTCTACTACTACTGTGTGGAGTGATGTGCGTGTTGTGCCACCCCTCACC
TCGTAACGCTTTGTGCTCCCTTCTCCACATACCGTAATATATGGCCATGC
CCACGCACCCCGCCTTCCTCTGGTTCCCATCTACCGCACTGCTCCCAGCT
CCTCCGTACCCCTCCACCCAGACACCGCCTCCCACCACCCACAAACCACC
CCCCCACCACCAGACCACACACCAGCACACGCGCACCGCTACCACCGCAT
GCTCGCTTCCATATGTGCACCCTCCCTCCCTCGCACCCCTGCCCCGACCG
CACACCACCCCCGCCGAACAACCTACCTCACTCGAAACCCCACCCTATGA
CCCCACTGTCATACCTCCCCACCCGGAACTCCCTATGTCTCACACACCCC
ATTTCCCTTTCACTACGTCCTCTCCTTCATCCCTACCACCGCCTGACGCC
TCCACCACGCCACTCCCCCCCTCTCTCCCCTCTCATCCCCCCCCCCTCAC
CTCTCCCCGCCTTCTCCCCCCTCCCTCCTCCCCCTCTTACCGTCTCGCCA
CCCCACCCCCCCCCGTCCTCCTGCCTCCCACCCGACCCCACCACCACGCC
TACTACCCCCCCACCCCCTACACGGCACCCCCCATCTCCTTTAACCCCAC
ATCATCCTATCTCCAGACACTACCACTCACCCTCCTGCCCCAATCCCTCA
CCCCCGCCCTC
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