DY260195

Overview
NameDY260195
Unique NameDY260195
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1170
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260195 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 204.527 bits (519), Expect = 9.747e-52
Identity = 109/243 (44.86%), Postives = 142/243 (58.44%), Query Frame = 1
Query:  154 GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLXXXXXXXXXXGVVEQSRPSCY*SSTIIQVSNLV-SG*PAQPPKASCHEVITDEWKPSANDLNAGRVPGIRSNHKLLSTRGLNVAQGWDDAVP*PVMGSFTTFRGRLGIPPGYHPDC 867
            G+L  IIS   F+D+L +RND  CPARGFYTY+AFI AAK+FP FG +G+   R +E+AAFF QT HETTGGW  AP G Y+WGYCF  E +P S YC  +  +PC    +YYGRGP+QL+WNYNY           GV   + P    +  +I     +     AQPPK SCH VI  +W+PS  D  AGR+PG      +++  GL   +G D  V    +G +  +    G+ PG + DC
Sbjct:   84 GDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNY----GLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIIN-GGLECGRGQDGRVA-DRIGFYQRYCNIFGVNPGGNLDC 320          
BLAST of DY260195 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 1.663e-51
Identity = 118/254 (46.46%), Postives = 143/254 (56.30%), Query Frame = 1
Query:  121 GERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCN--LNYPC-RGKYY-GRGPIQLTWNYNYLXXXXXXXXXXGVVEQSRPSCY*SSTIIQVSNLV-SG*PAQPPKASCHEVITDEWKPSANDLNAGRVPGIRSNHKLLSTRGLNVAQGWDDAVP*PVMGSFTTFRGRLGIPPGYHPDC 867
            G  D G   D G L  II +  F+ LL +RND RCPA GFYTY+AFI AAK FP FGN+G++ MR REIAAF  QT HETTGGW DAP G YAWGYC++ EI+   PYC+   NY C  GK Y GRGPIQL+WNYNY            +     P    +  +I     +      Q PK SCH VIT  W PSA DL AGRVPG      +++  G+   QG  +A     +G +  +   LG   G + DC
Sbjct:   76 GGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEINC-QPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNY----GLCGDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIIN-GGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDC 323          
BLAST of DY260195 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 2.836e-51
Identity = 113/245 (46.12%), Postives = 147/245 (60.00%), Query Frame = 1
Query:  166 KIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLXXXXXXXXXXGVVEQSRPSCY*SSTIIQVSNLVSG*PA-------QPPKASCHEVITDEWKPSANDLNAGRVPGIRSNHKLLSTRGLNVAQGWDDAVP*PVMGSFTTFRGRLGIPPGYHPDC 867
            KIISR MF+ +L +RN+  CPA+GFYTYDAF+ AAK+FP+FG +G+  +R RE+AAF  QT HETTGGW  AP G YAWGYCF+ E +P S YC  +  YPC  GK YYGRGP+QL+WNYNY              E  R +   +  ++    ++S   A       Q PK SCH+V+T  W+PSA D  AGR+PG      LL+  GL   +G +  V    +G F  + G LG+  G + DC
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNY----------GPCGEALRVNLLGNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLN-GGLECGKGPNPQVA-DRLGFFRRYCGLLGVGTGNNLDC 236          
BLAST of DY260195 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 3.704e-51
Identity = 117/265 (44.15%), Postives = 153/265 (57.74%), Query Frame = 1
Query:  100 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL--NYPCR--GKYYGRGPIQLTWNYNYLXXXXXXXXXXGVVEQSRPSCY*SSTIIQV-SNLVSG*PAQPPKASCHEVITDEWKPSANDLNAGRVPGIRSNHKLLSTRGLNVAQGWDDAVP*PVMGSFTTFRGRLGIPPGYHPDCLPPT 879
            CG G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   R REIAAF  QT HETTGGW  AP G YAWGYCF+ E + PS YC+    +PC    +YYGRGPIQ++WNYNY           GV   ++P    + ++I   S L     AQ PK S H+VIT  W PS+ D+ A R+PG  +   +++  GL   +G D  V    +G F  +   LG+  G + DC   T
Sbjct:   58 CGPG--CQSQCGGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERN-PSTYCSATPQFPCAPGQQYYGRGPIQISWNYNY----GQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIIN-GGLECGRGQDSRVQ-DRIGFFKRYCDLLGVGYGNNLDCYSQT 313          
BLAST of DY260195 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 6.318e-51
Identity = 111/243 (45.68%), Postives = 140/243 (57.61%), Query Frame = 1
Query:  154 GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLXXXXXXXXXXGVVEQSRPSCY*SSTIIQVSNLV-SG*PAQPPKASCHEVITDEWKPSANDLNAGRVPGIRSNHKLLSTRGLNVAQGWDDAVP*PVMGSFTTFRGRLGIPPGYHPDC 867
            G+L  IISR  F+D+L +RND  CPARGFYTYDAFI AAK+FP FG +G+   R +EIAAFF QT HETTGGW  AP G Y+WGYCF  E +P S YC  +  +PC     YYGRGP+QL+WNYNY           G    + P    +  +I     +      Q PK SCH VI  +W+PS  D  AGRVPG      +++  GL   +G D  V    +G +  +   LG+ PG + DC
Sbjct:   69 GDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNY----GQCGRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIIN-GGLECGRGQDARVA-DRIGFYQRYCNILGVNPGGNLDC 305          
BLAST of DY260195 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.078e-50
Identity = 118/270 (43.70%), Postives = 154/270 (57.04%), Query Frame = 1
Query:  100 CGS-----GVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL--NYPCR--GKYYGRGPIQLTWNYNYLXXXXXXXXXXGVVEQSRPSCY*SSTIIQV-SNLVSG*PAQPPKASCHEVITDEWKPSANDLNAGRVPGIRSNHKLLSTRGLNVAQGWDDAVP*PVMGSFTTFRGRLGIPPGYHPDCLPPT 879
            CGS     G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   R REIAAF  QT HETTGGW  AP G YAWGYCF+ E + PS YC+    +PC    +YYGRGPIQ++WNYNY           GV   ++P    + ++I   S L     AQ PK S H+VIT  W PS+ D+ A R+PG  +   +++  GL   +G D  V    +G F  +   LG+  G + DC   T
Sbjct:   50 CGSTTDYCGKDCQSQCGGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERN-PSAYCSATPQFPCAPGQQYYGRGPIQISWNYNY----GQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIIN-GGLECGRGQDSRVQ-DRIGFFKRYCDLLGVGYGNNLDCYSQT 312          
BLAST of DY260195 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 5.348e-50
Identity = 102/214 (47.66%), Postives = 127/214 (59.35%), Query Frame = 1
Query:  100 CGSGV-VCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLXXXXXXXXXXGVVEQSRPSCY*SSTIIQVSNLV-SG*PAQPPKASCHEVITDEWKPSANDLNAGRVPG 723
            CG+    CG       +  G++G++I+R MF D+L +RN+  CP +GFYTYDAFI AAKAFP FG +G+ T R REIAAF AQT HETTGGW  AP G YAWGYC++ E   P  YC  +  +PC    KYYGRGPIQ+++NYNY           GV   + P    +  +I            Q PK SCH VIT  W PS  D +AGR+PG
Sbjct:   44 CGNTADYCGSGCQSQCSSTGDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNY----GQAGKAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPG 253          
BLAST of DY260195 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 6.985e-50
Identity = 110/244 (45.08%), Postives = 142/244 (58.20%), Query Frame = 1
Query:  151 GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN--YPCR--GKYYGRGPIQLTWNYNYLXXXXXXXXXXGVVEQSRPSCY*SSTIIQV-SNLVSG*PAQPPKASCHEVITDEWKPSANDLNAGRVPGIRSNHKLLSTRGLNVAQGWDDAVP*PVMGSFTTFRGRLGIPPGYHPDC 867
            GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T R REIAAFFAQT HETTGGW  AP G YAWGYC++ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY           GV   + P    +  +I   S L      Q PK SCH+VI   W+PSA D  A R+PG      +++  GL   +G D  V    +G +  +   LG+ PG + DC
Sbjct:   77 GGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNY----GPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIIN-GGLECGRGTDSRVQ-DRIGFYRRYCSILGVSPGDNLDC 314          
BLAST of DY260195 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.191e-49
Identity = 118/257 (45.91%), Postives = 150/257 (58.37%), Query Frame = 1
Query:  118 CGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTG--GWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLXXXXXXXXXXGVVEQSRPSCY*SS-TIIQVSNLVSG*PAQPPKASCHEVITDEWKPSANDLNAGRVPGIRSNHKLLSTRGLNVAQGWDDAVP*PVMGSFTTFRGRLGIPPGYHPDC 867
            C  + +G G D G L  +I+RE F+ +L +RND  CPARGFYTYDAFI AAK+FPAF  +G++  R RE+AAF AQT HETTG  GW  AP G Y WGYC+  E++ P+ YC  + NYPC  GK Y+GRGP+QLTWNYNY           GV   + P    +  TI   S        Q PK SCH+VI   W PS +D  AGRVPG      +++  GL   QGW+  V    +G +  +   LG+  G + DC
Sbjct:   58 CQSQCSGSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELN-PADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNY----GQCGRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIIN-GGLECGQGWNAKVE-DRIGFYKRYCDTLGVGYGNNLDC 306          
BLAST of DY260195 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.556e-49
Identity = 113/260 (43.46%), Postives = 145/260 (55.77%), Query Frame = 1
Query:  103 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLXXXXXXXXXXGVVEQSRPSCY*SSTIIQVSN-LVSG*PAQPPKASCHEVITDEWKPSANDLNAGRVPGIRSNHKLLSTRGLNVAQGWDDAVP*PVMGSFTTFRGRLGIPPGYHPDC 867
            G G   G    G G  GG +  ++S+E+FE LL +RND  CPARGFYTYDA + AA AFP F  +G++  R RE+AAF  QT HETTGGW  AP G Y+WGYCF  EI   + YC  +  +PC    KY+GRGPIQL++NYNY           G    + P    S  ++     L      Q PK SCH+VIT +W PS+ D+ AGRVPG      +++  GL    G DD V   + G +  +   LGI  G + DC
Sbjct:   67 GGGGGGGGGGGGGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNY----GPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIIN-GGLECGFGPDDRVANRI-GFYQRYCDVLGIGYGSNLDC 320          
The following BLAST results are available for this feature:
BLAST of DY260195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIB_ARATH9.747e-5244.86Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI6_POPTR1.663e-5146.46Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIT_CARPA2.836e-5146.12Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHIT_PHAVU3.704e-5144.15Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI2_BRANA6.318e-5145.68Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI5_PHAVU1.078e-5043.70Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHIB_VITVI5.348e-5047.66Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI1_TOBAC6.985e-5045.08Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI1_THECC1.191e-4945.91Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI9_ORYSJ1.556e-4943.46Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YK09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260195 ID=DY260195; Name=DY260195; organism=Citrus clementina; type=EST; length=1170bp
ATTGATATCATCTTTGTTGCTTTCAAAATGAGGCTTATTGCGTCCTTACT
AGTTTTCTCTCTAGTTTTATCTTTCGTACTAGGAGGCTCAGCACGGAATT
GTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACCGGCCACGGGACGGAT
GGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCT
TCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCTACACTTATG
ATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGA
AATGAAACCATGCGTACAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGG
CCATGAAACTACTGGGGGATGGCGCGATGCACCTGGTGGAGAATATGCTT
GGGGATATTGCTTTATAAGCGAAATTAGCCCTCCGTCCCCCTACTGTAAT
CTTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACT
CACTTGGAATTACAATTACTTACGGTGCCGGAGAAGACCTAGGGCTAGGA
GAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTACTATC
ATTCAAGTCAGCAATCTGGTTTCTGGATGACCCGCACAGCCCCCCAAAGC
ATCCTGCCACGAAGTCATTACCGACGAATGGAAACCATCCGCCAATGACC
TAAACGCCGGCCGGGTTCCCGGAATACGGTCTAACCACAAATTATTATCC
ACGCGGGGATTGAATGTGGCCCAGGGTTGGGATGACGCCGTACCCTAACC
CGTAATGGGTTCCTTTACCACTTTCCGGGGCAGGTTGGGGATTCCCCCTG
GTTACCATCCTGATTGCCTCCCCCCAACAGCCCTTTGGGCCTATTCCGGA
CGGCCCCACCCTCGCGGACCCCCCAGCCCACCGCTTTTGTAAAAAAACCC
TCCACAAAACCCCCCCTACAAAAAACCCTTCAGGTGTCCCCTTGGGGGGG
GGGACCAACACCTTTTTGTCCCCCCCCTTTTGAGAAAAAAATTTCAACAA
AACCATACCGCCCCACGAGGGGATCACATCGCCCTCCCCCCCCCCCAAAC
AACACCACCACAAAACAAACACAAAAACACCCCCCCTCCTTCTCTCCGCT
CATCACCCGGCGGCATCTCC
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