DY260203

Overview
NameDY260203
Unique NameDY260203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1056
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14679 contig Ccv1_Contig14679:4..1059. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY260203 vs. ExPASy Swiss-Prot
Match: Y1105_ARATH (Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana GN=At1g11050 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 6.474e-36
Identity = 95/279 (34.05%), Postives = 149/279 (53.41%), Query Frame = 2 
Query:   14 CCQTLTSLVGIGLALYLRETSMFQLPNETASSSCLSDFQHNLAALSINPSLVAACFPDKYQFVTRPSSCAGIVTTKDWRKLVGPTSALDSDCKN-MTGFTQCSSCVEAGYKVNSQLVSIQQNSTK---CFYFAILYAAGILN--DPKDEATAACILGLPLXXXXXXXXXXNDRVIKXXXXXXXXXXXXXXXXXXXXMYRKWYKKRKRNALHEEFVRSFKDSVLPNSGAKWFRESELDPATGGFSQKIS*AKAPRGLCTKELLKMEPWVAVKPITDFKTQ 832
            CCQ+L +L+GI LA  L++TS F+LPN   S SCL++ Q  L++LS++ +L + CF D  QFV    +CAGI TT+DW   +GP++ALDS C + +T  T+C +CV AG++V  QL+++  NS+    C++F + YAAGI+N   P+ +   +C+  L L          +   +                     +Y ++ K  K   +  E   S +    PN+G+ WF+  EL+ AT  FSQK    +   G   K +L     +AVK + + + Q
Sbjct:   57 CCQSLLTLIGIPLAHRLKQTSNFRLPNLATSISCLNNLQTKLSSLSLSSNLTSLCF-DPNQFVINNETCAGIQTTQDWVSRLGPSTALDSACSSGLTDLTRCDACVAAGFRVQKQLITLDGNSSHGVYCYHFVVTYAAGIVNKKGPESDDALSCLFSLSLRSPLNSKKKRH--TVALALGITGAIFGALVIAGLICLYFRFGKAVKGGEVGWEDQGS-RPKWRPNTGSIWFKIEELEKATNNFSQKNFIGRGGFGFVYKGVLPDGSVIAVKKVIESEFQ 331
The following BLAST results are available for this feature:
BLAST of DY260203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1105_ARATH6.474e-3634.05Probable receptor-like protein kinase At1g11050 OS... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YK20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260203 ID=DY260203; Name=DY260203; organism=Citrus clementina; type=EST; length=1056bp
TGATGGAACCCTATGCTGCCAGACTCTCACTAGCCTTGTTGGCATCGGAC
TTGCTCTATACCTTAGAGAGACCTCAATGTTTCAATTACCAAACGAAACT
GCTTCCTCTTCTTGCTTATCTGATTTTCAACACAATCTTGCCGCCTTGTC
GATAAATCCATCTTTAGTCGCCGCTTGCTTTCCCGACAAATACCAATTTG
TCACAAGACCTTCAAGTTGTGCTGGAATTGTAACAACTAAAGACTGGAGA
AAATTGGTTGGTCCGACAAGCGCGCTAGACTCCGATTGCAAGAACATGAC
TGGATTTACCCAGTGCAGTTCATGTGTTGAAGCTGGTTACAAAGTGAATT
CTCAGCTGGTAAGCATACAACAAAATTCAACAAAATGCTTTTACTTTGCT
ATATTATACGCTGCTGGTATCCTCAATGATCCTAAGGATGAAGCCACGGC
TGCTTGCATACTAGGCTTGCCTCTTTCTACCTCAGGGTCGAAGAACTCGT
CCAGTAATGATAGAGTGATCAAAATAGTAGTCGCATTACTGGGTGCTCTT
TTGGGTGTTCTGCTTGCTGGTGGATTGATCATTATGTACAGAAAGTGGTA
TAAGAAAAGGAAACGGAATGCTTTACACGAGGAATTTGTGAGAAGTTTTA
AGGACAGTGTGTTACCAAACTCGGGTGCTAAATGGTTTCGTGAATCTGAG
CTTGATCCAGCTACCGGTGGATTCTCTCAGAAAATCTCATAGGCCAAGGC
GCCTCGGGGATTGTGTACAAAGGAACTCCTGAAGATGGAACCCTGGGTTG
CCGTAAAGCCAATTACTGATTTTAAAACACAAAAGGGGACCAAAAAATTT
TTTTATGGAAGTTTAAATCCATAAGTAAAATAAGGCACCAAAAATCCTCC
TATCCCTTAAAAGCCTGCCCGCCTTCCAAGCCGATGACAAAAAAGGCCAA
AAAAAAATTTCCTGGTTTGTGATTTCCAGCCCCCAGGGCCCGTTCCCCCG
GAACCCAAAATTCCAAACCCCCCCCCCCAAAAAAAACACTTTGGGCTGGG
CCCCCC
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