DY260231

Overview
NameDY260231
Unique NameDY260231
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1108
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1457 contig Ccv1_Contig1457:1..1108. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260231 vs. ExPASy Swiss-Prot
Match: Y7797_ORYSJ (B3 domain-containing protein Os07g0679700 OS=Oryza sativa subsp. japonica GN=Os07g0679700 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 6.095e-40
Identity = 98/195 (50.26%), Postives = 118/195 (60.51%), Query Frame = 1
Query:    4 GTAFFATTTKHPRHRPGCSCIVCIPPPSGKG-KHKPTCTCLVCMTVKRRFKTLMMRKK-RQSEREEEVAQRNQPTWGPKEEAEVDSSSKHVSSHLDPSENEARSANELESKGQNNNLSGKLAESSKAELDLNCHP---EREEAQAGLNRVSMMKLLQVASHPLETYLKQNGLTSLTSDQQASS---GTLAPPQAA 564
            G+   ATTTKHPRHRPGC+CIVCI PPSGKG KH P CTC VCMTV+RRFKTLMMRKK RQSEREE  A + +  W  ++E E  S S              RS   +++    +       + +K  +DLN HP     EE   G  RVSM+ LL+VA+ PLE Y+KQNGLTSL  +Q +SS   G    PQ A
Sbjct:  723 GSPSVATTTKHPRHRPGCTCIVCIQPPSGKGPKHNPACTCNVCMTVRRRFKTLMMRKKQRQSEREEAEASK-KIAWMNRDEPEGSSLS--------------RSPQTVDTTRDGDVTMFDKVDINKGHIDLNFHPTAVRDEERHGGQPRVSMVSLLEVANRPLENYMKQNGLTSLAGEQGSSSTCTGAATVPQPA 902          
BLAST of DY260231 vs. ExPASy Swiss-Prot
Match: VAL2_ARATH (B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 7.468e-30
Identity = 75/177 (42.37%), Postives = 95/177 (53.67%), Query Frame = 1
Query:    4 GTAFFATTTKHPRHRPGCSCIVCIPPPSGKGKHKPTCTCLVCMTVKRRFKTLMMRKKRQSEREEEVAQRNQPTWGPKEEAEVDSSSKHVSSHLDPSENEARSANELESKGQNNNLSGKLAESSKAELDLNCHPEREEAQAGLNRVSMMKLLQVASHPLETYLKQNGLTSLTSDQQAS 534
            G    A TTKHPRHR GCSCIVC  PPSGKGKHKP+CTC VC  VKRRF+TLM+RK+ + E  +   Q                           S++E R   E+ES       +G+        +DLN  P       G +RVSMM+LLQ A+ PLE YLKQ  +++   +QQ+S
Sbjct:  614 GEITVAATTKHPRHRAGCSCIVCSQPPSGKGKHKPSCTCTVCEAVKRRFRTLMLRKRNKGEAGQASQQAQ-------------------------SQSECRDETEVESIPAVELAAGE-------NIDLNSDP-------GASRVSMMRLLQAAAFPLEAYLKQKAISNTAGEQQSS 751          
BLAST of DY260231 vs. ExPASy Swiss-Prot
Match: Y7633_ORYSJ (B3 domain-containing protein Os07g0563300 OS=Oryza sativa subsp. japonica GN=Os07g0563300 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.722e-26
Identity = 64/136 (47.06%), Postives = 84/136 (61.76%), Query Frame = 1
Query:   25 TTKHPRHRPGCSCIVCIPPPSGKG-KHKPTCTCLVCMTVKRRFKTLMMR--KKRQSEREEEVAQRNQPTWGPKEEAEVDSSSKHVSSHLDPSENEARSANELESKGQNNNLSGKLAESSKAELDLNCHPEREEAQA 423
            TT+HPRHRPGCSCIVCI PPSGKG KHK TCTC VCMTV+RRF+TLMMR  K++QSE++  V ++ +P     E      S  H +S   P +    +    E    +N    + +   K ++DLN  PERE+ Q+
Sbjct:  810 TTRHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCMTVRRRFRTLMMRREKRQQSEKDSGVPRKREPGQS-SEPVPQSGSGAHPTSTSSPHQRADTNGEGPEDMSIDNK---RTSSPVKNQIDLNSQPEREDEQS 941          
BLAST of DY260231 vs. ExPASy Swiss-Prot
Match: VAL1_ARATH (B3 domain-containing transcription repressor VAL1 OS=Arabidopsis thaliana GN=VAL1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.782e-23
Identity = 61/121 (50.41%), Postives = 76/121 (62.81%), Query Frame = 1
Query:   19 ATTTKHPRHRPGCSCIVCIPPPSGKGKHKPTCTCLVCMTVKRRFKTLMM-RKKRQSEREEEVAQRNQ-------PTWGPKEEAEVDSSSKHVSSHLDPSENEARSANELESKGQNNNLSGK 357
            ATTT+HPRHR GCSCIVCI PPSGKG+HKPTC C VC TVKRRFKTLMM RKK+Q ER+   A+  +        +   KEE EV+++   ++S  DP   E   A  +E +       G+
Sbjct:  639 ATTTRHPRHRAGCSCIVCIQPPSGKGRHKPTCGCTVCSTVKRRFKTLMMRRKKKQLERDVTAAEDKKKKDMELAESDKSKEEKEVNTARIDLNS--DPYNKEDVEAVAVEKEESRKRAIGQ 757          
BLAST of DY260231 vs. ExPASy Swiss-Prot
Match: VAL3_ARATH (B3 domain-containing transcription factor VAL3 OS=Arabidopsis thaliana GN=VAL3 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 2.110e-16
Identity = 71/207 (34.30%), Postives = 100/207 (48.31%), Query Frame = 1
Query:    4 GTAFFATTTKHPRHRPGCSCIVCIPPPSGKG-KHKPTCTCLVCMTVKRRFKTLMMRK-KRQSEREEEVAQRNQPTWGPKEEAEVDSSSKHVSSHLDPSENEARSANELESKGQNNNLSGKLAESSKAELDLNCHPER-EEAQAGLNRVSMMKLLQVASHPLETYLKQNGLTSLTSDQQASSGTLAPPQAAGESEGQL---NELASAT 606
            G     TTTKHPRHR GC+CI+CI  PSG G KH   C+C VC T KRR ++L++R+ K+Q E+E+            ++  E  +S   +    + SEN  R A+ L                 K +LDLN  PE+ EE+  G N+ +  + L     P +  +K    +S TS   +S    A  Q   E EG+L    E+A  T
Sbjct:  550 GLLISPTTTKHPRHRDGCTCIICIQSPSGIGPKHDRCCSCAVCDTNKRRRRSLLLRREKKQMEKEDNA----------RKLLEQLNSDNGLHQSANNSENHERHASPL-----------------KVQLDLNFKPEKDEESLPGSNKTTKSETL-----PHDDTVK----SSFTSPSSSS----AHSQNNKEDEGKLKTTTEIADTT 716          
The following BLAST results are available for this feature:
BLAST of DY260231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
Y7797_ORYSJ6.095e-4050.26B3 domain-containing protein Os07g0679700 OS=Oryza... [more]
VAL2_ARATH7.468e-3042.37B3 domain-containing transcription repressor VAL2 ... [more]
Y7633_ORYSJ1.722e-2647.06B3 domain-containing protein Os07g0563300 OS=Oryza... [more]
VAL1_ARATH1.782e-2350.41B3 domain-containing transcription repressor VAL1 ... [more]
VAL3_ARATH2.110e-1634.30B3 domain-containing transcription factor VAL3 OS=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YM16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260231 ID=DY260231; Name=DY260231; organism=Citrus clementina; type=EST; length=1108bp
CCTGGCACTGCATTTTTTGCAACTACAACCAAACACCCAAGGCATCGTCC
TGGCTGTTCATGTATTGTGTGCATTCCACCCCCGAGTGGGAAGGGCAAGC
ACAAGCCCACATGCACATGCCTTGTGTGTATGACTGTTAAAAGACGTTTC
AAAACCCTCATGATGCGCAAGAAGCGCCAATCTGAGCGTGAAGAAGAGGT
TGCGCAAAGAAATCAACCAACTTGGGGTCCCAAGGAGGAAGCAGAAGTAG
ACAGCAGTTCCAAGCATGTATCATCACACCTTGATCCTTCAGAGAATGAA
GCCAGGTCTGCGAATGAGTTAGAATCAAAGGGCCAAAACAACAATCTGTC
CGGAAAATTGGCTGAATCCAGCAAGGCAGAGTTAGACTTGAATTGCCATC
CCGAACGTGAAGAGGCGCAAGCCGGGTTGAATCGAGTGAGCATGATGAAA
CTTCTCCAAGTAGCCAGTCATCCTTTGGAGACTTATCTGAAGCAGAATGG
TCTAACAAGCTTGACATCTGACCAACAAGCAAGTTCAGGAACACTTGCTC
CACCACAAGCTGCAGGAGAGAGTGAAGGACAGCTTAACGAGCTTGCTTCT
GCGACTCAAGAGCGAGAAAGCGGAGGTGAAGACAATTGTGAACCGGTTTC
AGATCAAATCCCAGATGATCCTGAATGAAGTTTCTCTTTCTTCATTTATT
CCATTTTTAGTGCCTCCTTTTATATAACTTAACATGATAGGTGTTCTTTT
CCTTTCCCTGAGTCGCAAATATCTATATTTCCTGAGTTAAAAGGTGCCTG
AACCTTTTAACTAATTGTATAAAGTATATGAAAAAATACACCAATTTTGA
ATAATGAGGCTTAAAAAAAAAAAAAAAAAAAAACCCACCTTTTCTCTGTC
CAAATTTGGCTTAAAAAAAAAACCTTGCTTTACCATTTTTTTGCACCAAA
CCGGTCCCCCACCCCTCCAAAAAAAAAATCCTTATTTCCCCCCCCCCCGA
AAACCCCCCCAAAGTAAATCCCAATTAACCGGGTACAAAGCTCTTTTTCC
CCGGGCCCCCCCCGGCCCCCGGTTCTCCAAAAACCCCTAAAGTTTTACAC
TTTTCCCA
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