DY260234

Overview
NameDY260234
Unique NameDY260234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1119
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5955 contig Ccv1_Contig5955:543..1661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260234 vs. ExPASy Swiss-Prot
Match: KC1D_ARATH (Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 2.927e-50
Identity = 106/165 (64.24%), Postives = 119/165 (72.12%), Query Frame = 2
Query:    2 QSRTYDLESLGYVLMYFLRGSLPWQGLKARTKKQKYDKISEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQTXXXXXXXXXXXXNLNPA-GPSAERVERPSGQEVRDRFAGGIEA-----FARRNTSG 478
            QSR  DLESLGY+LMYFL+GSLPWQGLKA TKKQKY++ISEKK+ T IE LC+ YPSEF SYFHYCRSLRF+DKPDY+YLKR+FRDLFIREG+QFDYVFDWTILKY Q+             LNPA G SA     P G    DR+ G  E       +RR  SG
Sbjct:  190 QSRRDDLESLGYILMYFLKGSLPWQGLKAGTKKQKYERISEKKVSTSIEALCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLTAPPSRA----LNPAVGTSA---ALPPGISNIDRYTGEEEGRPHMESSRRRVSG 347          
BLAST of DY260234 vs. ExPASy Swiss-Prot
Match: KC1_EIMTE (Casein kinase I OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 4.094e-44
Identity = 81/104 (77.88%), Postives = 91/104 (87.50%), Query Frame = 2
Query:    2 QSRTYDLESLGYVLMYFLRGSLPWQGLKARTKKQKYDKISEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTIL 313
            QSR  DLE+LGYVLMYF RGSLPWQGLKA TKK KYDKI EKKM TPIEVLCK +P EF +Y +YCRSLRFED+PDYSYL+RLF+DLF REGYQ+D++FDWT L
Sbjct:  190 QSRRDDLEALGYVLMYFNRGSLPWQGLKATTKKDKYDKIMEKKMSTPIEVLCKQFPFEFITYLNYCRSLRFEDRPDYSYLRRLFKDLFFREGYQYDFIFDWTFL 293          
BLAST of DY260234 vs. ExPASy Swiss-Prot
Match: KC1_TOXGO (Casein kinase I OS=Toxoplasma gondii PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 2.654e-43
Identity = 78/104 (75.00%), Postives = 91/104 (87.50%), Query Frame = 2
Query:    2 QSRTYDLESLGYVLMYFLRGSLPWQGLKARTKKQKYDKISEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTIL 313
            QSR  DLE+LGYVLMYF RGSLPWQGLKA TKK KYDKI EKKM TPIE+LCK +P EF +Y +YCRSLRFED+PDY+YL+RLF+DLF REGYQ+D++FDWT +
Sbjct:  190 QSRRDDLEALGYVLMYFNRGSLPWQGLKATTKKDKYDKIMEKKMSTPIEILCKHFPFEFITYLNYCRSLRFEDRPDYAYLRRLFKDLFFREGYQYDFIFDWTFI 293          
BLAST of DY260234 vs. ExPASy Swiss-Prot
Match: KC1E_MOUSE (Casein kinase I isoform epsilon OS=Mus musculus GN=Csnk1e PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 3.466e-43
Identity = 79/106 (74.53%), Postives = 95/106 (89.62%), Query Frame = 2
Query:    2 QSRTYDLESLGYVLMYFLRGSLPWQGLKARTKKQKYDKISEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKY 319
            QSR  DLESLGYVLMYF  GSLPWQGLKA TK+QKY++ISEKKM TPIEVLCK YPSEF++Y ++CRSLRF+DKPDYSYL++LFR+LF R+G+ +DYVFDW +LK+
Sbjct:  190 QSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKF 295          
BLAST of DY260234 vs. ExPASy Swiss-Prot
Match: KC1E_HUMAN (Casein kinase I isoform epsilon OS=Homo sapiens GN=CSNK1E PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 3.466e-43
Identity = 79/106 (74.53%), Postives = 95/106 (89.62%), Query Frame = 2
Query:    2 QSRTYDLESLGYVLMYFLRGSLPWQGLKARTKKQKYDKISEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKY 319
            QSR  DLESLGYVLMYF  GSLPWQGLKA TK+QKY++ISEKKM TPIEVLCK YPSEF++Y ++CRSLRF+DKPDYSYL++LFR+LF R+G+ +DYVFDW +LK+
Sbjct:  190 QSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKF 295          
BLAST of DY260234 vs. ExPASy Swiss-Prot
Match: KC1E_CHICK (Casein kinase I isoform epsilon OS=Gallus gallus GN=CSNK1E PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 3.466e-43
Identity = 79/106 (74.53%), Postives = 95/106 (89.62%), Query Frame = 2
Query:    2 QSRTYDLESLGYVLMYFLRGSLPWQGLKARTKKQKYDKISEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKY 319
            QSR  DLESLGYVLMYF  GSLPWQGLKA TK+QKY++ISEKKM TPIEVLCK YPSEF++Y ++CRSLRF+DKPDYSYL++LFR+LF R+G+ +DYVFDW +LK+
Sbjct:  190 QSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKF 295          
BLAST of DY260234 vs. ExPASy Swiss-Prot
Match: KC1D_XENTR (Casein kinase I isoform delta OS=Xenopus tropicalis GN=csnk1d PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 3.466e-43
Identity = 86/142 (60.56%), Postives = 103/142 (72.54%), Query Frame = 2
Query:    2 QSRTYDLESLGYVLMYFLRGSLPWQGLKARTKKQKYDKISEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQTXXXXXXXXXXXXNLNPAGPSAERVERPSGQEVR 427
            QSR  DLESLGYVLMYF  GSLPWQGLKA TK+QKY++ISEKKM TPIEVLCK YPSEF +Y ++CRSLRF+DKPDYSYL++LFR+LF R+G+ +DYVFDW +LK+                 N A   AER  R   + +R
Sbjct:  190 QSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKF---------------GANRAAEDAERERREREERLR 316          
BLAST of DY260234 vs. ExPASy Swiss-Prot
Match: KC1D_XENLA (Casein kinase I isoform delta OS=Xenopus laevis GN=csnk1d PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 4.526e-43
Identity = 79/106 (74.53%), Postives = 94/106 (88.68%), Query Frame = 2
Query:    2 QSRTYDLESLGYVLMYFLRGSLPWQGLKARTKKQKYDKISEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKY 319
            QSR  DLESLGYVLMYF  GSLPWQGLKA TK+QKY++ISEKKM TPIEVLCK YPSEF +Y ++CRSLRF+DKPDYSYL++LFR+LF R+G+ +DYVFDW +LK+
Sbjct:  190 QSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKF 295          
BLAST of DY260234 vs. ExPASy Swiss-Prot
Match: KC1D_RAT (Casein kinase I isoform delta OS=Rattus norvegicus GN=Csnk1d PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 4.526e-43
Identity = 79/106 (74.53%), Postives = 94/106 (88.68%), Query Frame = 2
Query:    2 QSRTYDLESLGYVLMYFLRGSLPWQGLKARTKKQKYDKISEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKY 319
            QSR  DLESLGYVLMYF  GSLPWQGLKA TK+QKY++ISEKKM TPIEVLCK YPSEF +Y ++CRSLRF+DKPDYSYL++LFR+LF R+G+ +DYVFDW +LK+
Sbjct:  190 QSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKF 295          
BLAST of DY260234 vs. ExPASy Swiss-Prot
Match: KC1D_PONAB (Casein kinase I isoform delta OS=Pongo abelii GN=CSNK1D PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 4.526e-43
Identity = 79/106 (74.53%), Postives = 94/106 (88.68%), Query Frame = 2
Query:    2 QSRTYDLESLGYVLMYFLRGSLPWQGLKARTKKQKYDKISEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKY 319
            QSR  DLESLGYVLMYF  GSLPWQGLKA TK+QKY++ISEKKM TPIEVLCK YPSEF +Y ++CRSLRF+DKPDYSYL++LFR+LF R+G+ +DYVFDW +LK+
Sbjct:  190 QSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKF 295          
The following BLAST results are available for this feature:
BLAST of DY260234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
KC1D_ARATH2.927e-5064.24Casein kinase I isoform delta-like OS=Arabidopsis ... [more]
KC1_EIMTE4.094e-4477.88Casein kinase I OS=Eimeria tenella PE=2 SV=1[more]
KC1_TOXGO2.654e-4375.00Casein kinase I OS=Toxoplasma gondii PE=2 SV=1[more]
KC1E_MOUSE3.466e-4374.53Casein kinase I isoform epsilon OS=Mus musculus GN... [more]
KC1E_HUMAN3.466e-4374.53Casein kinase I isoform epsilon OS=Homo sapiens GN... [more]
KC1E_CHICK3.466e-4374.53Casein kinase I isoform epsilon OS=Gallus gallus G... [more]
KC1D_XENTR3.466e-4360.56Casein kinase I isoform delta OS=Xenopus tropicali... [more]
KC1D_XENLA4.526e-4374.53Casein kinase I isoform delta OS=Xenopus laevis GN... [more]
KC1D_RAT4.526e-4374.53Casein kinase I isoform delta OS=Rattus norvegicus... [more]
KC1D_PONAB4.526e-4374.53Casein kinase I isoform delta OS=Pongo abelii GN=C... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YM20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260234 ID=DY260234; Name=DY260234; organism=Citrus clementina; type=EST; length=1119bp
GCAAAGCAGAACATATGATCTGGAATCTCTTGGATATGTGCTTATGTATT
TTCTCAGGGGAAGTCTTCCCTGGCAGGGATTGAAAGCCCGTACCAAAAAG
CAGAAATATGACAAGATTAGTGAAAAGAAGATGCTTACTCCTATTGAGGT
CCTTTGCAAATCTTATCCTTCAGAATTCACATCATACTTCCACTATTGCC
GGTCATTGCGGTTTGAAGATAAACCAGATTATTCATACTTGAAAAGGCTT
TTCCGCGATCTGTTTATACGAGAAGGTTATCAGTTCGACTATGTTTTTGA
TTGGACTATATTGAAGTATCCGCAGACGGGCTCCAGTTCAAGATCACGAC
CAAGCGGGAAACCAAATTTGAACCCTGCAGGACCATCAGCTGAAAGAGTA
GAGAGGCCTTCAGGACAAGAGGTTCGAGATAGATTCGCTGGTGGAATTGA
GGCCTTTGCAAGACGGAATACATCTGGTCATGGTCTGCATGGTGATCACT
CAAGGCACAAATCTTCAGATGATGTGCCATCATCAAAGGATGTGCAACCT
GATTCAGAAAGGCCTCGCTCCTTGTCTCGAAACAGTAGTTCTTTAAAGAG
GGCTATCATGTCAGGTGGCCGACCAAGCTCATCTGGTGACCATAGTGATA
ATCGGGTCCAGCAGACTGGTCCTCGGCCTCCGGCGTGGTCGTTCTGTCTA
CTACCCCAAAGGGCTCACCTGGGTATGAATCCAATCATCCTCCCTTCCCC
CGTGGTGCAACCCCCAAAATTGGCCCTGATGGAGCCCCTCCGAACTTTAA
CCCCCCCGACATTGGTTTCAGGAAAAAGAAAAAAACCACCAAACTACCGG
GGAAAAGGGATTTTTCCCCCCCAAAAAAAAAAATTTTCTTTGTTTCCTCC
CACCCCAAACCCCCCGCCCCGAAAAGGTTTTCCCCCCTTTTTTTATTGGG
GCACCCTATTTGGGCCCCCCCCCCCCGGCCCCCCCCCCCCCCAAAACCAA
AAAAAACCTCTTGGACTTTTTTCCGGGGATTTCTCCCCTTTTTCTTACCC
GCCCCCCCCCCCCCAAAAAGAAAAAAAACCAAAAGAAGAATTTTTCCCCC
CCCAGGGAATTTTTTTTCC
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