DY260237

Overview
NameDY260237
Unique NameDY260237
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length484
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11197 contig Ccv1_Contig11197:79..561. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260237 vs. ExPASy Swiss-Prot
Match: CYT5_ARATH (Cysteine proteinase inhibitor 5 OS=Arabidopsis thaliana GN=CYS5 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 3.114e-18
Identity = 40/68 (58.82%), Postives = 49/68 (72.06%), Query Frame = 1
Query:  115 ALVGGWKPIEDPKEKPVMEIRQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKK 318
            A VGGW PI +  +  V+EI +FAV+EYNK+S+S LKFE+V  GETQVVSGTNYRL +   DG    K
Sbjct:   26 ARVGGWSPISNVTDPQVVEIGEFAVSEYNKRSESGLKFETVVSGETQVVSGTNYRLKVAANDGDGVSK 93          

HSP 2 Score: 30.8018 bits (68), Expect = 3.114e-18
Identity = 11/23 (47.83%), Postives = 16/23 (69.57%), Query Frame = 2
Query:  314 RNLKLSVWEKPWEHFKSPTSFKP 382
            +N    VW+KPW  F++ TSF+P
Sbjct:   93 KNYLAIVWDKPWMKFRNLTSFEP 115          
BLAST of DY260237 vs. ExPASy Swiss-Prot
Match: CYT1_MAIZE (Cystatin-1 OS=Zea mays GN=RAMDAZC7 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 7.223e-12
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  103 DRKGALVGGWKPIE-DPKEKPVMEIRQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEA 327
            D  G L GG K +  +  +  + E+ +FAV E+N+++ + L FE + K +TQVV+GT Y L + VKDG   K +EA
Sbjct:   35 DNAGMLAGGIKDVPANENDLQLQELARFAVNEHNQKANALLGFEKLVKAKTQVVAGTMYYLTIEVKDGEVKKLYEA 110          

HSP 2 Score: 33.4982 bits (75), Expect = 7.223e-12
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  332 VWEKPWEHFKSPTSFKPM 385
            VWEKPWE+FK    FKP+
Sbjct:  112 VWEKPWENFKQLQEFKPV 129          
BLAST of DY260237 vs. ExPASy Swiss-Prot
Match: CYT1_ORYSJ (Cysteine proteinase inhibitor 1 OS=Oryza sativa subsp. japonica GN=Os01g0803200 PE=1 SV=2)

HSP 1 Score: 58.5362 bits (140), Expect = 7.533e-11
Identity = 27/72 (37.50%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  112 GALVGGWKPIEDPKEKPVMEIRQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEA 327
            G ++GG +P+ +  +  ++++ +FAVTE+NK++ S L+FE +   + QVV+GT Y   + VK+G + K +EA
Sbjct:   44 GPVLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGDAKKLYEA 115          

HSP 2 Score: 30.0314 bits (66), Expect = 7.533e-11
Identity = 11/18 (61.11%), Postives = 12/18 (66.67%), Query Frame = 2
Query:  332 VWEKPWEHFKSPTSFKPM 385
            VWEKPW  FK    FKP+
Sbjct:  117 VWEKPWMDFKELQEFKPV 134          
The following BLAST results are available for this feature:
BLAST of DY260237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CYT5_ARATH3.114e-1858.82Cysteine proteinase inhibitor 5 OS=Arabidopsis tha... [more]
CYT1_MAIZE7.223e-1240.79Cystatin-1 OS=Zea mays GN=RAMDAZC7 PE=2 SV=1[more]
CYT1_ORYSJ7.533e-1137.50Cysteine proteinase inhibitor 1 OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YM23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260237 ID=DY260237; Name=DY260237; organism=Citrus clementina; type=EST; length=484bp
CGGACTTTGGTCCTTCCGGGCACCAAAACAACGAAAACGAACCAACGCCC
CCGCCGCCCCACCGCCCCCCCCCCCCCCGCGGCCCCTCTCCTGGCCGCCG
GCGACCGTAAAGGAGCGTTGGTTGGGGGATGGAAGCCGATAGAGGACCCC
AAGGAGAAGCCCGTGATGGAGATCCGGCAGTTCGCGGTGACGGAGTACAA
CAAACAGTCAAAGAGCGCGTTGAAGTTCGAGAGCGTGGAGAAGGGCGAGA
CTCAGGTGGTTTCCGGCACCAATTACCGGCTGATCTTGGTCGTCAAGGAC
GGACCTTCGACCAAGAAATTTGAAGCTGTCCGTTTGGGAGAAGCCATGGG
AGCATTTCAAGAGTCCCACCTCGTTTAAGCCTATGGTTAAATAGGGTGTT
TAACAAATAACAATGCATGTAATCTCCGATTGATAATTATTAAGGTTTTC
GTTATGTGAGTGATGATATTATTATATTGTTTAC
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