DY260324

Overview
NameDY260324
Unique NameDY260324
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1232
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260324 vs. ExPASy Swiss-Prot
Match: GLSN_MEDSA (Glutamate synthase [NADH], amyloplastic OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 1.127e-88
Identity = 144/193 (74.61%), Postives = 164/193 (84.97%), Query Frame = 1
Query:    1 RRVILMAEEGVKFVVNANVGIDPMYSLDQLREENDAIVLAVGSTKPRDLPVPGRDLSGIHFAMEFLHSNTKSLLDSNLEDDSYISAXXXXXXXXXXXXXXXXXXXXSIRHGCSSIVNLELLPQPPQTRAPGNPWPQWPRVFRVDYGHQEVAAKFGKDPRSYEVLTKRFIGDENGVVKGLEIVRVPWEKDTSGK 579
            RRV LMAEEG+ FVVNAN+G+DP+YSL++LREENDAIVLAVG+TKPRDLPVPGR+LSG+HFAMEFLH+NTKSLLDSNL+D +YISA                    SIRHGC+++VNLELLPQPP TRAPGNPWPQWPR+FRVDYGHQE   KFGKDPR+YEVLTKRF+GDENGVVKGLE+VRV WEKD +GK
Sbjct: 1880 RRVNLMAEEGINFVVNANIGLDPLYSLERLREENDAIVLAVGATKPRDLPVPGRELSGVHFAMEFLHANTKSLLDSNLQDGNYISAKGKKVVVIGGGDTGTDCIGTSIRHGCTAVVNLELLPQPPPTRAPGNPWPQWPRIFRVDYGHQEAETKFGKDPRTYEVLTKRFVGDENGVVKGLEVVRVCWEKDETGK 2072          

HSP 2 Score: 41.9726 bits (97), Expect = 1.127e-88
Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 3
Query:  582 FHSQRLKALRK*LGADLVLPAMGFPGPESNVAKKFGPHPNNRSKFQ 719
            F  + ++   + + ADLVL AMGF GPE+ +A+K G   +NRS F+
Sbjct: 2073 FQFKEIEGSEEIIEADLVLLAMGFLGPEATIAEKLGVERDNRSNFK 2118          
BLAST of DY260324 vs. ExPASy Swiss-Prot
Match: GLT1_SCHPO (Putative glutamate synthase [NADPH] OS=Schizosaccharomyces pombe GN=SPAPB1E7.07 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.991e-54
Identity = 105/193 (54.40%), Postives = 130/193 (67.36%), Query Frame = 1
Query:    1 RRVILMAEEGVKFVVNANVGIDPMYSLDQLREENDAIVLAVGSTKPRDLPVPGRDLSGIHFAMEFLHSNTKSLLDSNLEDDSYISAXXXXXXXXXXXXXXXXXXXXSIRHGCSSIVNLELLPQPPQTRAPGNPWPQWPRVFRVDYGHQEVAAKFGKDPRSYEVLTKRFIGDENGVVKGLEIVRVPWEKDTSGK 579
            RR+ LM +EG++ + N  VG +   SLD+L +  DA+VLA GST PRDLP+P RD  GIHFAMEFLH NTKSLLDS L+D +YISA                    S+RHG  S+ NLELLP PP+ RA  NPWPQ+PRVFRVDYGH EV A +G+D R Y +LTK F  DE+G VKG+  VR+ W K++ G+
Sbjct: 1810 RRIQLMIDEGIEVLTNVEVGKNGDVSLDELHKVYDAVVLASGSTVPRDLPIPNRDSKGIHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRHGAKSVRNLELLPIPPRERAFDNPWPQYPRVFRVDYGHAEVQAHYGQDFREYSILTKSFEKDEDGNVKGINTVRIEWTKNSKGR 2002          

HSP 2 Score: 23.8682 bits (50), Expect = 1.991e-54
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  624 ADLVLPAMGFPGPE 665
            ADLV+ A+GF GPE
Sbjct: 2017 ADLVILALGFLGPE 2030          
BLAST of DY260324 vs. ExPASy Swiss-Prot
Match: GLT1_YEAST (Glutamate synthase [NADH] OS=Saccharomyces cerevisiae GN=GLT1 PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 5.432e-45
Identity = 89/192 (46.35%), Postives = 121/192 (63.02%), Query Frame = 1
Query:    1 RRVILMAEEGVKFVVNANVGIDPMYSLDQLREENDAIVLAVGSTKPRDLPVPGRDLSGIHFAMEFLHSNTKSLLDSNLEDDSYISAXXXXXXXXXXXXXXXXXXXXSIRHGCSSIVNLELLPQPPQTRAPGNPWPQWPRVFRVDYGHQEVAAKFGKDPRSYEVLTKRFIGDENGVVKGLEIVRVPWEKDTSG 576
            RR+ L++ EG+ FV N  +G     S+D+L+ +++A+V A+GST PRDLP+ GR+L  I FAM+ L SNTK+LL+ +LE                           S+RHG +S++N ELLP+PP  RA  NPWPQWPRV RVDYGH EV   +G+DPR Y +L+K FIG++ G V  +  VRV W+K  SG
Sbjct: 1837 RRIDLLSAEGIDFVTNTEIG--KTISMDELKNKHNAVVYAIGSTIPRDLPIKGRELKNIDFAMQLLESNTKALLNKDLEIIRE-KIQGKKVIVVGGGDTGNDCLGTSVRHGAASVLNFELLPEPPVERAKDNPWPQWPRVMRVDYGHAEVKEHYGRDPREYCILSKEFIGNDEGEVTAIRTVRVEWKKSQSG 2025          

HSP 2 Score: 23.8682 bits (50), Expect = 5.432e-45
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  624 ADLVLPAMGFPGPE 665
            AD++L +MGF GPE
Sbjct: 2041 ADIILLSMGFVGPE 2054          
BLAST of DY260324 vs. ExPASy Swiss-Prot
Match: GLTB_BACSU (Glutamate synthase [NADPH] small chain OS=Bacillus subtilis GN=gltB PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 3.476e-34
Identity = 69/193 (35.75%), Postives = 108/193 (55.96%), Query Frame = 1
Query:    1 RRVILMAEEGVKFVVNANVGIDPMYSLDQLREENDAIVLAVGSTKPRDLPVPGRDLSGIHFAMEFLHSNTKSLLDSNLEDDSYISAXXXXXXXXXXXXXXXXXXXXSIRHGCSSIVNLELLPQPPQTRAPGNPWPQWPRVFRVDYGHQEVAAKFGKDPRSYEVLTKRFIGDENGVVKGLEIVRVPWEKDTSGK 579
            RR+ L+ +EG+ FV N  +G+D   + D+L+E+ DA++L  G+ K RDL + GRD  G+H+AM++L   TKS LDSN +D  +I A                    ++R    S+      P+ P  R   N WP+ P VF ++Y ++E  AKFG+DPR Y + T + + D+NG +K L  +++   K+  GK
Sbjct:  207 RRIKLLTQEGIDFVTNTEIGVD--ITADELKEQFDAVILCTGAQKQRDLLIEGRDSKGVHYAMDYLTLATKSYLDSNFKDKQFIDAKGKDVIVIGGGDTGADCVATALRQKAKSVHQFGKHPKLPPARTNDNMWPEQPHVFTLEYAYEEAEAKFGRDPREYSIQTTKMVADKNGKLKELHTIQMEKVKNEHGK 397          

HSP 2 Score: 25.0238 bits (53), Expect = 3.476e-34
Identity = 14/41 (34.15%), Postives = 20/41 (48.78%), Query Frame = 3
Query:  582 FHSQRLKALRK*LGADLVLPAMGFPGPESNVAKKFGPHPNN 704
            +  + L    K   A LV  A+GF G E  + K+FG +  N
Sbjct:  398 YEFRELPGTEKVWPAQLVFIAIGFEGTEQPLLKQFGVNSVN 438          
The following BLAST results are available for this feature:
BLAST of DY260324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GLSN_MEDSA1.127e-8874.61Glutamate synthase [NADH], amyloplastic OS=Medicag... [more]
GLT1_SCHPO1.991e-5454.40Putative glutamate synthase [NADPH] OS=Schizosacch... [more]
GLT1_YEAST5.432e-4546.35Glutamate synthase [NADH] OS=Saccharomyces cerevis... [more]
GLTB_BACSU3.476e-3435.75Glutamate synthase [NADPH] small chain OS=Bacillus... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YC12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260324 ID=DY260324; Name=DY260324; organism=Citrus clementina; type=EST; length=1232bp
AGGCGGGTTATCCTTATGGCCGAGGAAGGTGTCAAGTTTGTGGTGAATGC
TAATGTTGGAATTGATCCTATGTACTCTCTTGATCAGCTTCGGGAGGAGA
ATGATGCTATTGTATTAGCAGTAGGCTCCACAAAACCTAGGGATCTTCCT
GTACCCGGAAGGGATTTGTCAGGCATCCATTTTGCAATGGAGTTCCTTCA
TTCAAATACCAAAAGCTTGCTAGATAGCAATCTCGAGGATGATAGCTACA
TTTCTGCCAAGGGGAAGAAAGTAGTTGTTATTGGTGGAGGAGATACTGGT
ACGGACTGTATAGGTACATCTATTCGTCATGGTTGTAGTAGCATCGTAAA
TCTAGAGCTTCTCCCTCAGCCTCCACAAACTAGGGCTCCTGGCAACCCTT
GGCCTCAGTGGCCTCGTGTATTCCGTGTAGACTATGGACACCAGGAAGTT
GCTGCCAAATTCGGCAAAGACCCAAGGTCATATGAGGTATTGACAAAGCG
GTTTATTGGAGATGAAAATGGGGTTGTGAAAGGACTAGAGATAGTACGTG
TGCCTTGGGAGAAGGATACTAGTGGGAAAGTTTCCATTCACAGAGGTTGA
AGGCTCTGAGGAAATAATTGGGGGCCGACCTAGTCCTTCCGGCCATGGGA
TTCCCTGGCCCCGAATCCAATGTGGCAAAAAAGTTTGGACCGCACCCAAA
CAACCGATCCAAATTTCAAGGACAAAAACCCGACCCTTGCCAACCCCTGT
GGATGGTGTCCTTCCACCCGGTCATGGCCCGGCTGGCCAGTTCCCCCGTC
GTTTGCTCTAACCCCCCACGGCCACCCACCGCCTCCCAATCGGAACCCAA
CCTTAACCTTATAAGGCAAACACCAAACAGCTGCATTTTCTCACCCCCCA
CTTCGCCTTCTCCAACCATTTCGAACAACCTACTCTTTACCCACACCTCG
CTTCTCCCTGCATTCGGTCAGCCCCCTTTACTGTTCCCCCCCGACCTCAC
AACGCTACCAACAACCCACACTCCACAACCCCAGCCCCCAATCCCTCCCC
ACCTAACCCCACCCCCCACACCACCCCCCACACACCTCCCCAATAACCAT
CATACCCCTAATCTTTCACCCCCAACTCACACTCCTCTGACGTACCTCAT
ATACTACACAATATACACCATCTCAACACAAACTATCCATCCCACTCACT
CAGACGTCCCGAAACCCACTCTCTACCTCCAG
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