DY260343

Overview
NameDY260343
Unique NameDY260343
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1048
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14902 contig Ccv1_Contig14902:2..1049. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260343 vs. ExPASy Swiss-Prot
Match: CATR_ATRNU (Caltractin OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 6.565e-73
Identity = 135/160 (84.38%), Postives = 148/160 (92.50%), Query Frame = 2
Query:   95 RKDKIRGRHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTTFGY 574
            RKDK RGRHHGL+QQK+QEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAID DEF HMMTAKIGERD+KEELMKAF IIDQDNNGKIS  DI+RIA+ELG NFT ++I +M+EEADRD DGEVN +EF+RMMKRT++ Y
Sbjct:    8 RKDKPRGRHHGLTQQKRQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDFDEFCHMMTAKIGERDTKEELMKAFRIIDQDNNGKISPEDIQRIAKELGENFTVKDIQDMIEEADRDRDGEVNVEEFLRMMKRTSYAY 167          
BLAST of DY260343 vs. ExPASy Swiss-Prot
Match: CML20_ARATH (Probable calcium-binding protein CML20 OS=Arabidopsis thaliana GN=CML20 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 9.480e-72
Identity = 137/168 (81.55%), Postives = 150/168 (89.29%), Query Frame = 2
Query:   68 MASLYKGVSRKDKIRGRHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTTFG 571
            M+S+Y+ VSRK+K R RHHGL+ QKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQIN+MIADVDKDGSGAID DEF HMMTAKIGERD+KEEL KAF IID D NGKIS  DIKR+A++LG NFTD EI EMVEEADRD DGEVN DEF+RMM+RT +G
Sbjct:    1 MSSIYRTVSRKEKPR-RHHGLTTQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINKMIADVDKDGSGAIDFDEFVHMMTAKIGERDTKEELTKAFQIIDLDKNGKISPDDIKRMAKDLGENFTDAEIREMVEEADRDRDGEVNMDEFMRMMRRTAYG 167          
BLAST of DY260343 vs. ExPASy Swiss-Prot
Match: CML13_ORYSJ (Probable calcium-binding protein CML13 OS=Oryza sativa subsp. japonica GN=CML13 PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 4.122e-67
Identity = 130/168 (77.38%), Postives = 149/168 (88.69%), Query Frame = 2
Query:   74 SLYKGVSRKDKIRG-RHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTTFGY 574
            S  KG +R+++ RG R HGL++QK+QEIKEAF+LFDTD SGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSG+ID +EFEHMMTAKIGERDSKEEL KAF IIDQD NGKIS  DI+RIA+ELG NFT +EI EMV+EADR+ DGE++ DEFIRMM+RT +GY
Sbjct:    2 STVKGQTRRERPRGARPHGLTKQKRQEIKEAFDLFDTDNSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGSIDYEEFEHMMTAKIGERDSKEELTKAFSIIDQDKNGKISDVDIQRIAKELGENFTYQEIQEMVQEADRNGDGEIDFDEFIRMMRRTGYGY 169          
BLAST of DY260343 vs. ExPASy Swiss-Prot
Match: CML19_ARATH (Calcium-binding protein CML19 OS=Arabidopsis thaliana GN=CML19 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.125e-56
Identity = 106/156 (67.95%), Postives = 131/156 (83.97%), Query Frame = 2
Query:  104 KIRGRHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTTFG 571
            K +G+ +GL+ QK++EI+E F+LFD DGSG+IDA ELNVAMR+LGFEM  +QIN+++A+VDK+ SGAID DEF HMMT K GERDS +EL KAF IID DNNGKIS  DIK IA+ELG NFTD +I EM+EEADRD DGEVN +EF++MMKRT++G
Sbjct:   12 KPKGKTYGLTNQKRREIREIFDLFDIDGSGSIDASELNVAMRSLGFEMNNQQINELMAEVDKNQSGAIDFDEFVHMMTTKFGERDSIDELSKAFKIIDHDNNGKISPRDIKMIAKELGENFTDNDIEEMIEEADRDKDGEVNLEEFMKMMKRTSYG 167          
BLAST of DY260343 vs. ExPASy Swiss-Prot
Match: CATR_SCHDU (Caltractin OS=Scherffelia dubia PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 9.524e-56
Identity = 103/158 (65.19%), Postives = 132/158 (83.54%), Query Frame = 2
Query:   92 SRKDKIRGRHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTT 565
            +R+DK + R  GL++++KQEI+EAF+LFDTDGSGTIDAKEL VAMRALGFE  +E+I +MIAD+DKDGSG ID +EF  MMTAK+GERDS+EE+MKAF + D D  GKIS  ++KR+A+ELG N TD E+ EM++EADRD DGEVN +EF R+MK+T+
Sbjct:    9 ARRDKAKTRSAGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEVNEEEFFRIMKKTS 166          
BLAST of DY260343 vs. ExPASy Swiss-Prot
Match: CML8_ORYSJ (Probable calcium-binding protein CML8 OS=Oryza sativa subsp. japonica GN=CML8 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.521e-53
Identity = 108/162 (66.67%), Postives = 131/162 (80.86%), Query Frame = 2
Query:   86 GVSRKDKIRGRHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTTFG 571
            G  R+ ++R +   L+ QK++EIKEAF+LFDTDGSGTID KELNVAMRALGFEMT EQI+QMIA+VDKDGSG ID DEF HMMT K+GERD++EEL KAF IID+DNNGKIS  DI+R+A E G  FT  E+ EM+E AD + DGEV+ +EF++MMKR  FG
Sbjct:   28 GYRREKQVRKKR--LTAQKRKEIKEAFDLFDTDGSGTIDPKELNVAMRALGFEMTPEQIHQMIAEVDKDGSGTIDFDEFVHMMTDKMGERDAREELNKAFKIIDKDNNGKISDVDIQRLAIETGEPFTLDEVREMIEAADENGDGEVDHEEFLKMMKRIGFG 187          
BLAST of DY260343 vs. ExPASy Swiss-Prot
Match: CATR_TETST (Caltractin (Fragment) OS=Tetraselmis striata PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 2.196e-52
Identity = 97/146 (66.44%), Postives = 124/146 (84.93%), Query Frame = 2
Query:  128 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTT 565
            L++++KQ+I+EAF+LFDTDGSGTIDAKEL VAMRALGFE  +E+I +MIAD+DKDGSG ID +EF  MMTAK+GERDS+EE+MKAF + D D  GKIS  ++KR+A+ELG N TD E+ EM++EADRD DGEVN +EF R+MK+T+
Sbjct:    1 LTEEQKQDIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEVNEEEFFRIMKKTS 146          
BLAST of DY260343 vs. ExPASy Swiss-Prot
Match: CATR_DUNSA (Caltractin OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 8.344e-52
Identity = 96/158 (60.76%), Postives = 131/158 (82.91%), Query Frame = 2
Query:   92 SRKDKIRGRHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTT 565
            +R+D+ +GR  GL++++KQEI+EAF+LFDTDGSGTIDAKEL VAMRALGFE  +E+I +MIAD+DK GSG ID +EF  MMT+K+GERDS+EE++KAF + D DN G I+  ++KR+A+ELG N TD E+ EM +EADR+ DG+++ DEF R+MK+T+
Sbjct:   10 ARRDQKKGRVGGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKAGSGTIDFEEFLQMMTSKMGERDSREEIIKAFKLFDDDNTGFITLKNLKRVAKELGENLTDEELQEMTDEADRNGDGQIDEDEFYRIMKKTS 167          
BLAST of DY260343 vs. ExPASy Swiss-Prot
Match: CATR_CHLRE (Caltractin OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 8.344e-52
Identity = 100/172 (58.14%), Postives = 139/172 (80.81%), Query Frame = 2
Query:   50 STRAKAMASLYKGVSRKDKIRGRHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTT 565
            S +AK + S     +R+D+ +GR  GL++++KQEI+EAF+LFDTDGSGTIDAKEL VAMRALGFE  +E+I +MI+++DKDGSG ID +EF  MMTAK+GERDS+EE++KAF + D DN+G I+  D++R+A+ELG N T+ E+ EM+ EADR+ D E++ DEFIR+MK+T+
Sbjct:    2 SYKAKTVVS-----ARRDQKKGRV-GLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKKTS 167          
BLAST of DY260343 vs. ExPASy Swiss-Prot
Match: CATR_SPESI (Caltractin (Fragment) OS=Spermatozopsis similis PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.684e-50
Identity = 93/146 (63.70%), Postives = 121/146 (82.88%), Query Frame = 2
Query:  128 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTT 565
            L++++KQE +EAF+LFDTDGSGTIDAKEL V M ALGFE  +E+I +MI+D+DKDGSG ID +EF  MMTAK+GERDS+EE+MKAF + D D  GKI+  ++KR+A+ELG N TD EI EM++EADRD DGE+N +EF R+MK+T+
Sbjct:    1 LTEEQKQEXREAFDLFDTDGSGTIDAKELKVXMXALGFEPKKEEIQKMISDIDKDGSGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDQTGKITFKNLKRVAKELGENLTDEEIQEMIDEADRDGDGEINEEEFFRIMKKTS 146          
The following BLAST results are available for this feature:
BLAST of DY260343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
CATR_ATRNU6.565e-7384.38Caltractin OS=Atriplex nummularia PE=2 SV=1[more]
CML20_ARATH9.480e-7281.55Probable calcium-binding protein CML20 OS=Arabidop... [more]
CML13_ORYSJ4.122e-6777.38Probable calcium-binding protein CML13 OS=Oryza sa... [more]
CML19_ARATH1.125e-5667.95Calcium-binding protein CML19 OS=Arabidopsis thali... [more]
CATR_SCHDU9.524e-5665.19Caltractin OS=Scherffelia dubia PE=2 SV=1[more]
CML8_ORYSJ1.521e-5366.67Probable calcium-binding protein CML8 OS=Oryza sat... [more]
CATR_TETST2.196e-5266.44Caltractin (Fragment) OS=Tetraselmis striata PE=2 ... [more]
CATR_DUNSA8.344e-5260.76Caltractin OS=Dunaliella salina PE=2 SV=1[more]
CATR_CHLRE8.344e-5258.14Caltractin OS=Chlamydomonas reinhardtii PE=1 SV=1[more]
CATR_SPESI2.684e-5063.70Caltractin (Fragment) OS=Spermatozopsis similis PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YD08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260343 ID=DY260343; Name=DY260343; organism=Citrus clementina; type=EST; length=1048bp
TTCCTTTCCTTTACTTTGCGGTCTTTTTTTGAAACGCTTTGCGATCTAAT
CGACCAGGGCAAAGGCAATGGCTAGTCTTTATAAAGGGGTTTCTAGGAAA
GATAAAATCAGAGGACGTCATCATGGGCTATCACAACAGAAGAAGCAAGA
GATTAAGGAAGCATTTGAACTTTTTGACACCGATGGCTCAGGCACTATTG
ATGCCAAAGAGCTGAATGTCGCTATGAGGGCCCTTGGTTTTGAGATGACC
GAAGAGCAAATCAATCAAATGATTGCAGATGTCGACAAGGATGGAAGTGG
TGCCATTGATTTAGATGAATTTGAACATATGATGACGGCTAAGATTGGAG
AAAGGGATTCTAAGGAAGAGCTCATGAAAGCATTCCATATCATTGACCAA
GATAACAATGGAAAGATATCAGCTGGAGATATTAAGCGTATTGCGAGGGA
GCTGGGTGTAAACTTCACTGACCGAGAGATTCATGAGATGGTAGAGGAAG
CAGACAGAGATCATGATGGAGAAGTAAACGCTGATGAGTTTATCCGTATG
ATGAAGAGGACCACATTCGGGTACTAGAGATCCATAAGGATGAAGAAGGG
TTGTTGATGCATGGTAGCTGTAGTATATACTTTGTGCCAAGTTGAAAGGA
AAATAATCATGGATTGATAAGTGATGGTTCATTGTTTTGGCTAAATTTTA
TGCCTGCAAATTTATTAATAATGTACCTGTCTTTTGTTATTTAATGATCT
GGGTAGGTCTAAGGATAAATTGGGAAATGCTCCCAGATCCTGTTAAATCA
AAAATGCCTAAGGTTCCTGCCGGATTGCCATTCCTGGACGTCCCTGAATT
CAGGAAATATTGGGCCTGATTTCCACCCAAAATTGACGGTAAAAAGGGCA
AAGCCAAAACCCCTTTCCCAAACCACCCAAAAAAAATTGGGAGGGAATCC
AAACCCCCCAACCTAAAAAAAATTTTTGGAAAAAAACCTTGTATTCCCCA
AAACGTTTTTTGGGGAAACTTGAAAACCCCAAACCCCTCTTTTCCTAT
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