DY260369

Overview
NameDY260369
Unique NameDY260369
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1274
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260369_ssr18 microsatellite DY260369_ssr18:18..35. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260369 vs. ExPASy Swiss-Prot
Match: VATB1_GOSHI (V-type proton ATPase subunit B 1 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 6.153e-63
Identity = 123/146 (84.25%), Postives = 129/146 (88.36%), Query Frame = 2
Query:   83 MGVAQNNVDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPIDNGPLILAEAYMDISRSSIKPHERT*PRYTIHT 520
            MG+A+N   MEEGTLE+ MEYRTV+GVAGPLVILDKVKGPKY EIVNIRLGDGT RRGQVLEVDGEKAVVQVFEGTSGIDNK+TTVQFTGEVLKTPV LDMLGRIFNGSGKPIDNGP IL EAY+DIS SSI P ERT P   I T
Sbjct:    1 MGMAENTNGMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQT 146          
BLAST of DY260369 vs. ExPASy Swiss-Prot
Match: VATB1_HORVU (V-type proton ATPase subunit B 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 8.036e-63
Identity = 122/146 (83.56%), Postives = 128/146 (87.67%), Query Frame = 2
Query:   83 MGVAQNNVDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPIDNGPLILAEAYMDISRSSIKPHERT*PRYTIHT 520
            MG+ +   DMEEGTLE+ MEYRTV+GVAGPLVILDKVKGPKY EIVNIRLGDGT RRGQVLEVDGEKAVVQVFEGTSGIDNK+TTVQFTGEVLKTPV LDMLGRIFNGSGKPIDNGP IL EAY+DIS SSI P ERT P   I T
Sbjct:    1 MGLVKEGADMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQT 146          
BLAST of DY260369 vs. ExPASy Swiss-Prot
Match: VATB3_ARATH (V-type proton ATPase subunit B3 OS=Arabidopsis thaliana GN=VHA-B3 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 5.209e-62
Identity = 120/144 (83.33%), Postives = 128/144 (88.89%), Query Frame = 2
Query:   89 VAQNNVDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPIDNGPLILAEAYMDISRSSIKPHERT*PRYTIHT 520
            + + ++DMEEGTLE+ MEYRTV+GVAGPLVILDKVKGPKY EIVNIRLGDG+ RRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPV LDMLGRIFNGSGKPIDNGP IL EAY+DIS SSI P ERT P   I T
Sbjct:    1 MVETSIDMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQT 144          
BLAST of DY260369 vs. ExPASy Swiss-Prot
Match: VATB2_ARATH (V-type proton ATPase subunit B2 OS=Arabidopsis thaliana GN=VHA-B2 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 6.803e-62
Identity = 122/146 (83.56%), Postives = 130/146 (89.04%), Query Frame = 2
Query:   83 MGVAQNNVDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPIDNGPLILAEAYMDISRSSIKPHERT*PRYTIHT 520
            MG A+NN++ME GTLE+ MEYRTV+GVAGPLVIL+KVKGPKY EIVNIRLGDGT RRGQVLEVDGEKAVVQVFEGTSGIDNK+TTVQFTGEVLKTPV LDMLGRIFNGSGKPIDNGP IL EAY+DIS SSI P ERT P   I T
Sbjct:    1 MGAAENNLEME-GTLEIGMEYRTVSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQT 145          
BLAST of DY260369 vs. ExPASy Swiss-Prot
Match: VATB1_ARATH (V-type proton ATPase subunit B1 OS=Arabidopsis thaliana GN=VHA-B1 PE=2 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 1.160e-61
Identity = 120/141 (85.11%), Postives = 127/141 (90.07%), Query Frame = 2
Query:   98 NNVDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPIDNGPLILAEAYMDISRSSIKPHERT*PRYTIHT 520
            N++D+EEGTLE+ MEYRTV+GVAGPLVILDKVKGPKY EIVNIRLGDG+ RRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPV LDMLGRIFNGSGKPIDNGP IL EAY+DIS SSI P ERT P   I T
Sbjct:    4 NDLDIEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQT 144          
BLAST of DY260369 vs. ExPASy Swiss-Prot
Match: VATB2_HORVU (V-type proton ATPase subunit B 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 7.522e-61
Identity = 119/138 (86.23%), Postives = 124/138 (89.86%), Query Frame = 2
Query:  107 DMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPIDNGPLILAEAYMDISRSSIKPHERT*PRYTIHT 520
            +MEEGTLE+ MEYRTV+GVAGPLVILDKVKGPKY EIVNIRLGDGT RRGQVLEVDGEKAVVQVFEGTSGIDNK+TTVQFTGEVLKTPV LDMLGRIFNGSGKPIDNGP IL EAY+DIS SSI P ERT P   I T
Sbjct:    4 EMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQT 141          
BLAST of DY260369 vs. ExPASy Swiss-Prot
Match: VATB1_ACEAT (V-type proton ATPase subunit B 1 OS=Acetabularia acetabulum PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 4.733e-47
Identity = 95/131 (72.52%), Postives = 108/131 (82.44%), Query Frame = 2
Query:  128 EVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPIDNGPLILAEAYMDISRSSIKPHERT*PRYTIHT 520
            E  +EYRTV GV+GPLV+++ VK PK+ EIVNIRLG+GT RRGQVLEVDG +AVVQVFEGTSGIDN+ TT+QFTGEVL TPV  DMLGR+FNGSGKPID GP +LAEAY+DI  SSI P ERT P   I T
Sbjct:   21 EPRIEYRTVGGVSGPLVVVELVKRPKFAEIVNIRLGNGTSRRGQVLEVDGNRAVVQVFEGTSGIDNRNTTLQFTGEVLSTPVSKDMLGRVFNGSGKPIDGGPPVLAEAYLDIQGSSINPSERTYPEEMIQT 151          
BLAST of DY260369 vs. ExPASy Swiss-Prot
Match: VATB2_ACEAT (V-type proton ATPase subunit B 2 OS=Acetabularia acetabulum PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 1.377e-46
Identity = 93/125 (74.40%), Postives = 106/125 (84.80%), Query Frame = 2
Query:  128 EVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPIDNGPLILAEAYMDISRSSIKPHERT*P 502
            E  +EYRTV GV+GPLV+++ VK PK+ EIVNIRLG+GT RRGQVLEVDG +AVVQVFEGTSGIDN+ TT+QFTGEVL TPV  DMLGR+FNGSGKPID GP +LAEAY+DI  SSI P ERT P
Sbjct:   21 EPRIEYRTVGGVSGPLVVVELVKRPKFAEIVNIRLGNGTSRRGQVLEVDGNRAVVQVFEGTSGIDNRNTTLQFTGEVLSTPVSKDMLGRVFNGSGKPIDGGPTVLAEAYLDIQGSSINPSERTYP 145          
BLAST of DY260369 vs. ExPASy Swiss-Prot
Match: VATB_CYACA (V-type proton ATPase subunit B OS=Cyanidium caldarium PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 5.415e-43
Identity = 86/138 (62.32%), Postives = 103/138 (74.64%), Query Frame = 2
Query:  137 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPIDNGPLILAEAYMDISRSSIKPHERT*PRYTIHTPTFSTTAIQS 550
            +EYRTV+ V GPL+IL  VK P++ EIVN+ LGDG++RRGQVLE++ +KAVVQ+FEGT+GIDNK T  QFTGE+LKTPV LDMLGR+FNGSGKPID GP IL EAY+DI    I P  RT P     T   S   + S
Sbjct:   21 LEYRTVSAVNGPLIILQNVKSPRFAEIVNVTLGDGSVRRGQVLEINQDKAVVQIFEGTTGIDNKKTVCQFTGEILKTPVSLDMLGRVFNGSGKPIDGGPPILPEAYLDIQGQPINPQSRTYPEEMFETGISSIDVMNS 158          
BLAST of DY260369 vs. ExPASy Swiss-Prot
Match: VATB_YEAST (V-type proton ATPase subunit B OS=Saccharomyces cerevisiae GN=VMA2 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 2.516e-40
Identity = 86/144 (59.72%), Postives = 109/144 (75.69%), Query Frame = 2
Query:   92 AQNNVDMEEG-TLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPIDNGPLILAEAYMDISRSSIKPHERT*PRYTIHT 520
            A N   +E+G  ++  + Y TV+GV GPLVIL+KVK P+Y EIVN+ L DGT+R+GQVLE+ G++A+VQVFEGTSGID K TTV+FTGE L+ PV  DMLGRIF+GSG+PIDNGP + AE Y+DI+ S I P+ R  P   I T
Sbjct:   10 AINKKAVEQGFNVKPRLNYNTVSGVNGPLVILEKVKFPRYNEIVNLTLPDGTVRQGQVLEIRGDRAIVQVFEGTSGIDVKKTTVEFTGESLRIPVSEDMLGRIFDGSGRPIDNGPKVFAEDYLDINGSPINPYARIYPEEMIST 153          
The following BLAST results are available for this feature:
BLAST of DY260369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
VATB1_GOSHI6.153e-6384.25V-type proton ATPase subunit B 1 OS=Gossypium hirs... [more]
VATB1_HORVU8.036e-6383.56V-type proton ATPase subunit B 1 OS=Hordeum vulgar... [more]
VATB3_ARATH5.209e-6283.33V-type proton ATPase subunit B3 OS=Arabidopsis tha... [more]
VATB2_ARATH6.803e-6283.56V-type proton ATPase subunit B2 OS=Arabidopsis tha... [more]
VATB1_ARATH1.160e-6185.11V-type proton ATPase subunit B1 OS=Arabidopsis tha... [more]
VATB2_HORVU7.522e-6186.23V-type proton ATPase subunit B 2 OS=Hordeum vulgar... [more]
VATB1_ACEAT4.733e-4772.52V-type proton ATPase subunit B 1 OS=Acetabularia a... [more]
VATB2_ACEAT1.377e-4674.40V-type proton ATPase subunit B 2 OS=Acetabularia a... [more]
VATB_CYACA5.415e-4362.32V-type proton ATPase subunit B OS=Cyanidium caldar... [more]
VATB_YEAST2.516e-4059.72V-type proton ATPase subunit B OS=Saccharomyces ce... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YE12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260369 ID=DY260369; Name=DY260369; organism=Citrus clementina; type=EST; length=1274bp
CCCTCTCCCTCTCTTTTTCTCTCTCTCTCTCTCTCACTCACAGAGATCAC
AAGAAAGACCAAAAAAAGAAAAAAAATTGAAAATGGGTGTGGCACAAAAC
AATGTTGACATGGAGGAGGGTACTCTGGAAGTCGCCATGGAGTACAGAAC
GGTCACCGGAGTTGCTGGGCCTCTAGTTATCCTTGATAAAGTCAAGGGAC
CCAAATATTATGAGATTGTCAATATTCGGTTGGGAGATGGAACAATGCGA
CGTGGTCAGGTCCTAGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTCTT
TGAAGGGACATCCGGAATTGACAATAAATTTACAACTGTGCAGTTTACAG
GGGAGGTTCTGAAGACTCCTGTCCCATTGGATATGCTTGGGCGCATTTTT
AATGGTTCTGGGAAACCCATTGATAATGGTCCCCTAATTCTAGCAGAGGC
TTATATGGATATATCCCGAAGTTCTATAAAACCACATGAAAGAACCTAAC
CCCGATACACCATACACACACCCACTTTCTCCACCACTGCGATCCAATCC
CGCTTCCTCCACGAAATAAGATACCCCCACTTCTCCCCTTCTAGTCCCCC
CCCCCTGCTCTTCCTGCTCCCATTCTCCTCCCCTATCACTCACTTATCTC
ACAGTAACCAGTCTCTTACATCTCTGGCCCGGAGGGATACAACCCCATCT
TCTACACTCGCCCTCGCCCCCCTGCCTCCTAACTACTTAAACCCACCTCG
CGTGCTATGCCCGACCTCGGTCTTCCGCTAAACTTCAAATAATTCCGCCT
CCCACTCCACTCCCCCACACCAACACCACACACCAAAACAACTACCACAC
AAACACTTCCACACGACAACAACACACATTTAAAACAAATATCAATAAAC
AAAAATAACCACAATATAAATACAACAAAACACCTCAACCACACCAATCT
ACCCACCATTCATCCATCCTCCACCAAACCAGTACAAAAACACCTAGTTA
AGTTCACCCACACCAATACCACAGCCACCTCTACACCACAAGTAAGTCTC
TCAACCATCACCCCGCGGGGCAACATTCCATATACCCAACCCTCACCGCG
GTCAACCTACACAAAACACTCCCACCAAACACACCTAACACACCCTCCCA
AACAATCATACCACACAAACCGCAGCACCACAAGCAAACCAATTGCAACA
TCTAACCAGCGATAATCACATACAACACCCCTCTATTAATACCTATCAAC
ACCAAACCTACAACAGATACAAAA
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