DY260381

Overview
NameDY260381
Unique NameDY260381
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1503 contig Ccv1_Contig1503:1..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY260381 vs. ExPASy Swiss-Prot
Match: KATAM_ARATH (Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.184e-28
Identity = 65/150 (43.33%), Postives = 96/150 (64.00%), Query Frame = 1 
Query:   46 NKVCDIVDCSNGICE-HDPIRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIVDVLMSIPNAKVRRMRERVIELMPGVIYRRHESTLGLKAKKDAFDIAIEGTLERI 492
            + V  +++C  G  + H P   M+    + FCLQP GD+ TRRS FD  LAGCIPVFF   SA +QY WHLP + Y  +SVFIP++DV  + + I + L+ IP  +V+ MRE VI L+P +IY    S   L+ +KDAFD++++  ++++
Sbjct:  392 SNVGKLLECDFGESKCHAPSSIMQMFQSSLFCLQPQGDSYTRRSAFDSMLAGCIPVFFHPGSAYTQYTWHLP-KNYTTYSVFIPEDDVRKRNISIEERLLQIPAKQVKIMRENVINLIPRLIYADPRSE--LETQKDAFDVSVQAVIDKV 538
[Close]
BLAST of DY260381 vs. ExPASy Swiss-Prot
Match: KATAM_ORYSJ (Xyloglucan galactosyltransferase KATAMARI1 homolog OS=Oryza sativa subsp. japonica GN=Os03g0144800 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.431e-28
Identity = 68/150 (45.33%), Postives = 90/150 (60.00%), Query Frame = 1 
Query:   46 NKVCDIVDCSNGICE-HDPIRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIVDVLMSIPNAKVRRMRERVIELMPGVIYRRHESTLGLKAKKDAFDIAIEGTLERI 492
            + VC +++C  G  + H P   M     + FCLQP GD+ TRRS FD  LAGCIPVFF   SA  QY WHLP + Y  +SVFIP++ V    + I D L SI    V++MRE VI L+P VIY    S   L+  KDAFD+++E  + ++
Sbjct:  369 SSVCKLLECDLGESKCHSPSAIMNMFQNSLFCLQPQGDSYTRRSAFDSMLAGCIPVFFHPGSAYVQYTWHLP-KNYTRYSVFIPEDGVRKGNVSIEDRLKSIHPDMVKKMREEVISLIPRVIYADPRSK--LETLKDAFDVSVEAIINKV 515
The following BLAST results are available for this feature:
BLAST of DY260381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
KATAM_ARATH3.184e-2843.33Xyloglucan galactosyltransferase KATAMARI1 OS=Arab... [more]
KATAM_ORYSJ5.431e-2845.33Xyloglucan galactosyltransferase KATAMARI1 homolog... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YF03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260381 ID=DY260381; Name=DY260381; organism=Citrus clementina; type=EST; length=590bp
CACAGCATTGAAGTTGTTGCTGCTGCTGGAGGTGGAGGGCATTTTAACAA
AGTGTGTGACATTGTGGATTGTTCTAATGGGATCTGTGAGCACGATCCTA
TTAGATTTATGAGGCCAATGTTGCGAGCAACGTTCTGCTTGCAGCCACCA
GGGGATACACCAACTAGGAGGTCAACTTTCGATGGGTTTCTTGCAGGTTG
CATTCCAGTTTTCTTTGAAGAGCAGTCAGCAAAATCCCAGTATGTGTGGC
ATTTGCCTGGGGAGATGTATGACGAGTTTTCAGTGTTTATACCAAAGGAA
GATGTGGTGTTTAAAGGATTGAAGATTGTTGATGTGTTGATGAGCATACC
AAATGCTAAGGTGAGGAGGATGAGGGAGAGAGTTATTGAGTTGATGCCCG
GAGTTATTTACAGAAGGCATGAGAGTACTCTGGGTTTGAAGGCTAAAAAG
GATGCTTTCGATATTGCAATTGAGGGTACTTTAGAAAGGATTAGATCCAA
GCTCAAAGTGTCAAGTCAATGAACTAACGAGTTCTATTAGTCTTCTTGGC
ATTGTAAAAATTATTTAATCACCATTTTCTTTTTCCTGCT
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