DY260382

Overview
NameDY260382
Unique NameDY260382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1133
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1504 contig Ccv1_Contig1504:1..1133. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260382 vs. ExPASy Swiss-Prot
Match: RL24_PRUAV (60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 7.088e-60
Identity = 115/134 (85.82%), Postives = 124/134 (92.54%), Query Frame = 1
Query:   55 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALPELNARMQTDPHDQTAQKAEET 456
            MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWT+MYRKQHKKDIA EAVKK+RR+TKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL E+  R++    ++ A+KAE T
Sbjct:    1 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVT 134          
BLAST of DY260382 vs. ExPASy Swiss-Prot
Match: RL24_CICAR (60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 3.293e-57
Identity = 110/147 (74.83%), Postives = 125/147 (85.03%), Query Frame = 1
Query:   55 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALPELNARMQTDPHDQTAQKAEETFKIKHLPNRSHPQ 495
            MVLKTELCRFSGAKIYPG+GIRFIR DSQVFLF NSKCKRYFHNRLKPSKLTWT+M+RKQHKKD A EAVKK+RR+TKKPYSRSIVGATLEVIQK+RTEKPEVRDAAREAAL E+  R++    ++ A+KAE   K +    + + Q
Sbjct:    1 MVLKTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVASKAQKSQGKGNVQ 147          
BLAST of DY260382 vs. ExPASy Swiss-Prot
Match: RL24_HORVU (60S ribosomal protein L24 OS=Hordeum vulgare GN=RPL24 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 9.580e-57
Identity = 109/134 (81.34%), Postives = 120/134 (89.55%), Query Frame = 1
Query:   55 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALPELNARMQTDPHDQTAQKAEET 456
            MVLKTELCRFSG KIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKP+KL WT+MYRKQHKKDI AEA KK+RR+TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAAL E+  R++    ++ A+KAE T
Sbjct:    1 MVLKTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQHKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVT 134          
BLAST of DY260382 vs. ExPASy Swiss-Prot
Match: RL241_ARATH (60S ribosomal protein L24-1 OS=Arabidopsis thaliana GN=RPL24A PE=1 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 6.866e-55
Identity = 107/157 (68.15%), Postives = 127/157 (80.89%), Query Frame = 1
Query:   55 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALPELNARMQTDPHDQTAQKAEETFKIK------HLPNRSHPQGCRL 507
            MVLKTELCRFSG KIYPG+GIRFIRSDSQVFLF NSKCKRYFHN+LKPSKL WT+MYRKQHKKD A EAVK++RR+TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAAL E+  R++    ++ A+K E   K +      ++P  + P+  ++
Sbjct:    1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKM 157          
BLAST of DY260382 vs. ExPASy Swiss-Prot
Match: RL242_ARATH (60S ribosomal protein L24-2 OS=Arabidopsis thaliana GN=RPL24B PE=2 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 8.967e-55
Identity = 104/132 (78.79%), Postives = 117/132 (88.64%), Query Frame = 1
Query:   55 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALPELNARMQTDPHDQTAQKAE 450
            MVLKTELCRFSG KIYPG+GIRFIRSDSQVFLF NSKCKRYFHN+LKPSKL WT+MYRKQHKKD A EAVK++RR+TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAAL E+  R++    ++ A+K E
Sbjct:    1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKVE 132          
BLAST of DY260382 vs. ExPASy Swiss-Prot
Match: RL24_DEBHA (60S ribosomal protein L24 OS=Debaryomyces hansenii GN=RPL24 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.926e-26
Identity = 59/130 (45.38%), Postives = 87/130 (66.92%), Query Frame = 1
Query:   61 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALPELNARMQTDPHDQTAQKAE 450
            +K EL  FSG KIYPG+G  F+R DS++F F +SK    FH R  P +++WT +YR+QHKK I+ E+ K++ R T K   R+IVGA+LE+I++RR++KP  R AAR+  L +     + D   + A+KA+
Sbjct:    1 MKVELDSFSGTKIYPGRGTLFVRGDSKIFRFQSSKSASLFHQRKNPRRISWTVLYRRQHKKGISEESAKRRTRKTVK-NQRAIVGASLELIKERRSQKPSDRKAARDVKLAKDKEAKKADKAARKAEKAK 129          
BLAST of DY260382 vs. ExPASy Swiss-Prot
Match: RL24B_SCHPO (60S ribosomal protein L24-B OS=Schizosaccharomyces pombe GN=rpl24b PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.926e-26
Identity = 59/130 (45.38%), Postives = 85/130 (65.38%), Query Frame = 1
Query:   61 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALPELNARMQTDPHDQTAQKAE 450
            +K E+C FSG+K+YPG G  F+R D++VF F N K +  F  R  P +L+WT +YR+ HKK I+ E  KK+ R T K + R IVGA L+VI+++R ++PEVR AAR AAL +   +      ++ A KA+
Sbjct:    1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVK-HQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQRKDKRAASESEKKAIKAK 129          
BLAST of DY260382 vs. ExPASy Swiss-Prot
Match: RL24A_SCHPO (60S ribosomal protein L24-A OS=Schizosaccharomyces pombe GN=rpl24a PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.926e-26
Identity = 59/130 (45.38%), Postives = 85/130 (65.38%), Query Frame = 1
Query:   61 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALPELNARMQTDPHDQTAQKAE 450
            +K E+C FSG+K+YPG G  F+R D++VF F N K +  F  R  P +L+WT +YR+ HKK I+ E  KK+ R T K + R IVGA L+VI+++R ++PEVR AAR AAL +   +      ++ A KA+
Sbjct:    1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVK-HQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQRKDKKAASESEKKAIKAK 129          
BLAST of DY260382 vs. ExPASy Swiss-Prot
Match: RL24_NEUCR (60S ribosomal protein L24 OS=Neurospora crassa GN=rpl-24 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.545e-25
Identity = 61/124 (49.19%), Postives = 83/124 (66.94%), Query Frame = 1
Query:   82 FSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALPELNARMQTDPHDQTAQKAEE 453
            FSG +IYPGKG  ++R DS++F F N K +  F  R  P ++ WT +YR+QHKK I+ E  KK+ R T K   R+IVGA+LEVI++RR+ +PE R AAR AA+ E  A+ Q     Q A+KAE+
Sbjct:    8 FSGQRIYPGKGKLYVRGDSKIFRFQNGKSESLFLQRKNPRRIAWTVLYRRQHKKGISEEVAKKRSRRTVKA-QRAIVGASLEVIKERRSMRPEARSAARLAAIKESKAKKQ---ETQAAKKAEK 127          
BLAST of DY260382 vs. ExPASy Swiss-Prot
Match: RL24_CANGA (60S ribosomal protein L24 OS=Candida glabrata GN=RPL24 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 4.340e-25
Identity = 61/131 (46.56%), Postives = 84/131 (64.12%), Query Frame = 1
Query:   61 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALPELNARMQTDPHDQTAQKAEE 453
            +K E+  FSGAKIYPG+G  F+R DS++F F NSK    F  R  P ++ WT +YR+ HKK I  E  KK+ R T K   R+IVGA+LE+I++RR+ KPEVR A R+    +  A  +    D+ A+KAE+
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRVAWTVLYRRHHKKGITEEVAKKRSRKTVKA-QRAIVGASLELIKERRSLKPEVRKAKRD---DKAKADKEKKKADKAARKAEK 127          
The following BLAST results are available for this feature:
BLAST of DY260382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL24_PRUAV7.088e-6085.8260S ribosomal protein L24 OS=Prunus avium GN=RPL24... [more]
RL24_CICAR3.293e-5774.8360S ribosomal protein L24 OS=Cicer arietinum GN=RP... [more]
RL24_HORVU9.580e-5781.3460S ribosomal protein L24 OS=Hordeum vulgare GN=RP... [more]
RL241_ARATH6.866e-5568.1560S ribosomal protein L24-1 OS=Arabidopsis thalian... [more]
RL242_ARATH8.967e-5578.7960S ribosomal protein L24-2 OS=Arabidopsis thalian... [more]
RL24_DEBHA3.926e-2645.3860S ribosomal protein L24 OS=Debaryomyces hansenii... [more]
RL24B_SCHPO3.926e-2645.3860S ribosomal protein L24-B OS=Schizosaccharomyces... [more]
RL24A_SCHPO3.926e-2645.3860S ribosomal protein L24-A OS=Schizosaccharomyces... [more]
RL24_NEUCR2.545e-2549.1960S ribosomal protein L24 OS=Neurospora crassa GN=... [more]
RL24_CANGA4.340e-2546.5660S ribosomal protein L24 OS=Candida glabrata GN=R... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YF04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260382 ID=DY260382; Name=DY260382; organism=Citrus clementina; type=EST; length=1133bp
CTTGGGTTTTAGGGTTTCTGAGGTAGCTGTGCCGCGCAATCGACATCAGA
AACCATGGTTCTCAAGACTGAACTGTGCCGCTTTAGCGGTGCCAAGATTT
ATCCTGGCAAGGGTATCAGATTCATTCGCTCTGATTCCCAGGTTTTCCTC
TTTGCCAATTCAAAATGCAAGAGGTACTTCCACAACCGCTTGAAGCCATC
AAAGCTTACATGGACTTCCATGTACAGGAAACAACACAAGAAGGATATTG
CTGCTGAGGCTGTAAAGAAGAAGCGCCGCTCCACAAAGAAGCCATATTCA
AGGTCTATTGTCGGTGCAACCTTGGAAGTCATACAGAAGAGGAGGACTGA
AAAGCCCGAAGTTCGAGATGCTGCTCGTGAGGCTGCTCTTCCTGAACTTA
ACGCCAGGATGCAGACCGACCCACATGACCAGACCGCCCAGAAAGCTGAG
GAGACCTTCAAAATCAAACACCTCCCAAACCGCTCCCACCCCCAAGGGTG
CCGGCTCCCAAACGAGCCCAACATATAGGAGTGAAGGCCAAACCCCAACA
CCTCCCCATCTCAACTCAGCTAATACCCGAACAACCGCCCAAACGCTCCC
TACACCACACCCCAGCCAACTCATACCCCACGCCCCACTCTCTGCCGTCA
CCTCTAACACACTTTTTTCCCCACTCTCCTACTCCCCCGCCAAATCACGC
ATCCCTGGCTCAACCCAGCTACCCCCCCACAATCTGGCCAATGCCCCCCC
ACCCCCCTCATTCAACCAATATCACTACCTCACTCCGACACCCCTATCAC
ACTATCACCGTCTCCCCCCTTCATCACCCCAAACCCACACCCACTCCCTT
ATCAATCACCTAATCTAACAACCCCGCCAGCCTCACTACGCCTCTGTCCC
CCCCGGCCCCAACCCTCCCCCCCCACCCCCCCTCTCCCTCCCCCGCCCCT
CACTTAGTCCCCACCCTTCCGACCCTTACCTCTCCCCAGCCTCCCCTCCC
CACCCCTCCTCATAACTTCCCTTCCGCCACAGCACCACAGTACCTCGACC
CAATCTCTACAGTCCCTCCGCCAACCCTCTCAGATACACCACAATTACAC
CGAGCTGCTCACACATCGTACGTCACCCCATGC
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