DY260384

Overview
NameDY260384
Unique NameDY260384
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1208
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9490 contig Ccv1_Contig9490:17..1224. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260384 vs. ExPASy Swiss-Prot
Match: ERA_XANOR (GTP-binding protein era homolog OS=Xanthomonas oryzae pv. oryzae GN=era PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.483e-18
Identity = 44/91 (48.35%), Postives = 68/91 (74.73%), Query Frame = 3
Query:  393 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPPTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDLMMKKNVRSA--GINAERIVV 659
            H+SG VAV+G+PNVGKSTL N ++G K+SIV+N+P TTRHR+LGI + PE Q++L DTPG+  ++   ++ +M +  R +  G++A  +V+
Sbjct:    8 HRSGSVAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLVDTPGLHREQKRAMNRVMNRAARGSLEGVDAAVLVI 98          
BLAST of DY260384 vs. ExPASy Swiss-Prot
Match: ERA_XANOM (GTP-binding protein era homolog OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=era PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.483e-18
Identity = 44/91 (48.35%), Postives = 68/91 (74.73%), Query Frame = 3
Query:  393 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPPTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDLMMKKNVRSA--GINAERIVV 659
            H+SG VAV+G+PNVGKSTL N ++G K+SIV+N+P TTRHR+LGI + PE Q++L DTPG+  ++   ++ +M +  R +  G++A  +V+
Sbjct:    8 HRSGSVAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLVDTPGLHREQKRAMNRVMNRAARGSLEGVDAAVLVI 98          
BLAST of DY260384 vs. ExPASy Swiss-Prot
Match: ERA_XANC5 (GTP-binding protein era homolog OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=era PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.483e-18
Identity = 44/91 (48.35%), Postives = 68/91 (74.73%), Query Frame = 3
Query:  393 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPPTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDLMMKKNVRSA--GINAERIVV 659
            H+SG VAV+G+PNVGKSTL N ++G K+SIV+N+P TTRHR+LGI + PE Q++L DTPG+  ++   ++ +M +  R +  G++A  +V+
Sbjct:    8 HRSGSVAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLVDTPGLHREQKRAMNRVMNRAARGSLEGVDAAVLVI 98          
BLAST of DY260384 vs. ExPASy Swiss-Prot
Match: ERA_XANAC (GTP-binding protein era homolog OS=Xanthomonas axonopodis pv. citri GN=era PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.483e-18
Identity = 44/91 (48.35%), Postives = 68/91 (74.73%), Query Frame = 3
Query:  393 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPPTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDLMMKKNVRSA--GINAERIVV 659
            H+SG VAV+G+PNVGKSTL N ++G K+SIV+N+P TTRHR+LGI + PE Q++L DTPG+  ++   ++ +M +  R +  G++A  +V+
Sbjct:    8 HRSGSVAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLVDTPGLHREQKRAMNRVMNRAARGSLEGVDAAVLVI 98          
BLAST of DY260384 vs. ExPASy Swiss-Prot
Match: ERA_XANCP (GTP-binding protein era homolog OS=Xanthomonas campestris pv. campestris GN=era PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.530e-18
Identity = 44/91 (48.35%), Postives = 68/91 (74.73%), Query Frame = 3
Query:  393 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPPTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDLMMKKNVRSA--GINAERIVV 659
            H+SG VAV+G+PNVGKSTL N ++G K+SIV+N+P TTRHR+LGI + PE Q++L DTPG+  ++   ++ +M +  R +  G++A  +V+
Sbjct:    7 HRSGSVAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLMLVDTPGLHREQKRAMNRVMNRAARGSLEGVDAAVLVI 97          
BLAST of DY260384 vs. ExPASy Swiss-Prot
Match: ERA_XANCB (GTP-binding protein era homolog OS=Xanthomonas campestris pv. campestris (strain B100) GN=era PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.530e-18
Identity = 44/91 (48.35%), Postives = 68/91 (74.73%), Query Frame = 3
Query:  393 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPPTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDLMMKKNVRSA--GINAERIVV 659
            H+SG VAV+G+PNVGKSTL N ++G K+SIV+N+P TTRHR+LGI + PE Q++L DTPG+  ++   ++ +M +  R +  G++A  +V+
Sbjct:    7 HRSGSVAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLMLVDTPGLHREQKRAMNRVMNRAARGSLEGVDAAVLVI 97          
BLAST of DY260384 vs. ExPASy Swiss-Prot
Match: ERA_XANC8 (GTP-binding protein era homolog OS=Xanthomonas campestris pv. campestris (strain 8004) GN=era PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.530e-18
Identity = 44/91 (48.35%), Postives = 68/91 (74.73%), Query Frame = 3
Query:  393 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPPTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDLMMKKNVRSA--GINAERIVV 659
            H+SG VAV+G+PNVGKSTL N ++G K+SIV+N+P TTRHR+LGI + PE Q++L DTPG+  ++   ++ +M +  R +  G++A  +V+
Sbjct:    7 HRSGSVAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLMLVDTPGLHREQKRAMNRVMNRAARGSLEGVDAAVLVI 97          
BLAST of DY260384 vs. ExPASy Swiss-Prot
Match: ERA_MARAV (GTP-binding protein era homolog OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=era PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.637e-18
Identity = 51/122 (41.80%), Postives = 74/122 (60.66%), Query Frame = 3
Query:  384 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPPTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDLMMKKNVRSAGINAERIVVPLDALKAPERIDEILEKGVGHPQNNCPFLL 749
            +P  + G+VA++G+PNVGKSTL N ++GQKLSI + KP TTRH++LGI +    Q I  DTPG+ E +   L+  M K   SA I+ + +V  +D L      + +LEK     +  CP +L
Sbjct:    9 NPESRCGFVAIVGRPNVGKSTLLNHILGQKLSITSRKPQTTRHQVLGIKTEGPVQAIYVDTPGMHEDEPRALNRYMNKAAASALIDVDVVVFVVDQLAWTSADEMVLEK---LKRVKCPVIL 127          
BLAST of DY260384 vs. ExPASy Swiss-Prot
Match: ERA_XYLFT (GTP-binding protein era homolog OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=era PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.615e-18
Identity = 40/80 (50.00%), Postives = 61/80 (76.25%), Query Frame = 3
Query:  393 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPPTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDLMMKKNVRSA 632
            ++ G +AV+G+PNVGKSTL N ++G K+SIV+N+P TTRHR+LGI + PE Q+IL DTPG+  ++ H ++ +M +  R +
Sbjct:    7 YRCGRIAVIGRPNVGKSTLTNALVGTKISIVSNRPQTTRHRLLGIATFPEGQIILVDTPGLHREQKHPMNRLMNRTARGS 86          
BLAST of DY260384 vs. ExPASy Swiss-Prot
Match: ERA_XYLF2 (GTP-binding protein era homolog OS=Xylella fastidiosa (strain M23) GN=era PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.615e-18
Identity = 40/80 (50.00%), Postives = 61/80 (76.25%), Query Frame = 3
Query:  393 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPPTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDLMMKKNVRSA 632
            ++ G +AV+G+PNVGKSTL N ++G K+SIV+N+P TTRHR+LGI + PE Q+IL DTPG+  ++ H ++ +M +  R +
Sbjct:    7 YRCGRIAVIGRPNVGKSTLTNALVGTKISIVSNRPQTTRHRLLGIATFPEGQIILVDTPGLHREQKHPMNRLMNRTARGS 86          
The following BLAST results are available for this feature:
BLAST of DY260384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
ERA_XANOR1.483e-1848.35GTP-binding protein era homolog OS=Xanthomonas ory... [more]
ERA_XANOM1.483e-1848.35GTP-binding protein era homolog OS=Xanthomonas ory... [more]
ERA_XANC51.483e-1848.35GTP-binding protein era homolog OS=Xanthomonas cam... [more]
ERA_XANAC1.483e-1848.35GTP-binding protein era homolog OS=Xanthomonas axo... [more]
ERA_XANCP2.530e-1848.35GTP-binding protein era homolog OS=Xanthomonas cam... [more]
ERA_XANCB2.530e-1848.35GTP-binding protein era homolog OS=Xanthomonas cam... [more]
ERA_XANC82.530e-1848.35GTP-binding protein era homolog OS=Xanthomonas cam... [more]
ERA_MARAV5.637e-1841.80GTP-binding protein era homolog OS=Marinobacter aq... [more]
ERA_XYLFT9.615e-1850.00GTP-binding protein era homolog OS=Xylella fastidi... [more]
ERA_XYLF29.615e-1850.00GTP-binding protein era homolog OS=Xylella fastidi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YF06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260384 ID=DY260384; Name=DY260384; organism=Citrus clementina; type=EST; length=1208bp
GAGAGAGTTACTTGAGAGCAGGCGAATGAAATCAACATGAAAGCCAAGCT
CCGATAATGGAGCTAGGTGTACACATATCCTCTTCTTTTGGCAGTCTGTT
CCCTCATTACAGCACATTAACAGCATATAGAGAAATTAAATTTGGGTTCC
AAGGCAGAAGTAGTAGTATCACTTGTAGAAGCAATGAGCACCAAAGCCTT
GTATTGTCAGAGAAAGAAGTACAGCAACAGAAGCTTTGGAGTAACCAACG
GGAAATGGACTTAGACGATGGTGATGAAATGGAATTTGACGATGCATCGT
CGTTTCTATCTCTGTCTGAAAAACCAGACAGGAATATGGCTTCGCCGGAC
GACTACGAGATTGAAGAATTTGACTACGCCTCTCATCCAAATCACAAAAG
CGGATATGTGGCAGTACTAGGGAAGCCAAATGTGGGGAAAAGTACGCTCG
CAAACCAAATGATCGGTCAAAAGCTCTCAATTGTTACAAATAAGCCCCCA
ACTACAAGGCACCGTATTCTTGGTATCTGTTCTGGTCCAGAGTATCAGAT
GATACTTTATGATACCCCTGGTATAATTGAGAAGAAAATTCACATGTTGG
ACCTCATGATGAAGAAAAATGTCCGCAGTGCTGGGATTAACGCCGAACGT
ATTGTTGTTCCCCTTGATGCCTTGAAAGCCCCTGAAAGAATTGATGAAAT
TTTGGAAAAAGGAGTGGGACACCCCCAAAATAATTGCCCATTTTTGTTGG
GTACCAAATAAAAACGATCTCACACACCCGGGTGAACATGCTCCACACCC
CCGCTGGGCACAACAAAATTCACCAAGACTCCCCACTCCAACCCCCTACC
CACACACCCCCCCACCGACGCCAACACACCCCGCACAGCACCCCAACCAA
CATCCCCCCACCCCACTCACCCCCTCCCAACCCTCCAAACCATCCACCCA
CAACCCCCCCCTCTCACGCCCACCCATTCAAACACTCAACCATACACACA
TACCCCCATGCCCATCACCATCTACCCACCCTCTCAATCCATCTTATCCA
TTCAATCCCCCTCTCATCCCTCCCCCCCTCTCTGCACTCCCTCCACAACC
CTCTGCTCACCCCCCCATGGCTCCCCCCCATTCATACATCCTGCCCACAA
CGATCCCGCCCACCTGTCACCTCCCATCCTCCGATGCTACCGACACTCCC
TCCCTACT
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