DY260395

Overview
NameDY260395
Unique NameDY260395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1222
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260395 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.045e-46
Identity = 85/125 (68.00%), Postives = 98/125 (78.40%), Query Frame = 3
Query:  171 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIEPLRTAGIEF 545
            REVWA NLESEFELIS++ID YPFISMDTEFPG++++ D+        R   P D Y +LK+NVDAL+LIQVGLTLSD +GNLPDLG   +  FIWEFNFRDFDVA DAHAPDSIE LR  GI+F
Sbjct:   20 REVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDL--------RFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDF 136          

HSP 2 Score: 39.2762 bits (90), Expect = 2.045e-46
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 1
Query:  532 RGLNFERNREEGVDSVRFPKLMMSSGPLPQPVREFGVTFHSS 657
            +G++FERN  +GV+S RF +LMMSSG +      + VTFHS+
Sbjct:  132 QGIDFERNCRDGVESERFAELMMSSGLVCNEEVSW-VTFHSA 172          
BLAST of DY260395 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.474e-46
Identity = 80/125 (64.00%), Postives = 97/125 (77.60%), Query Frame = 3
Query:  171 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIEPLRTAGIEF 545
            R+VWA NLESEF+LI  +++ YPFISMDTEFPG++Y+ D+D       R+  P+  Y +LKSNVDAL+LIQVGLTLSD+ GNLPDLG   N ++IWEFNFRDFDV  D HAPDSIE LR  GI+F
Sbjct:   15 RDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLD-----VLRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDF 134          

HSP 2 Score: 43.5134 bits (101), Expect = 3.474e-46
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1
Query:  535 GLNFERNREEGVDSVRFPKLMMSSGPLPQPVREFGVTFHSS 657
            G++FERNR EGV+S RF +LMMSSG +      + VTFHS+
Sbjct:  131 GIDFERNRREGVESERFAELMMSSGLICNESVSW-VTFHSA 170          
BLAST of DY260395 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 5.682e-33
Identity = 66/126 (52.38%), Postives = 88/126 (69.84%), Query Frame = 3
Query:  171 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDVATDAHAPDSIEPLRTAGIEF 545
            REVW  NLESE  LI +V+D +PF++MDTEFPG+V RP     T   +       HY+ LK+NV+ L +IQ+GLT SD  GNLP  G+  +NK+ IW+FNFR+FD+ +D +A DSIE LR +GI+F
Sbjct:   13 REVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY-------HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGT--DNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDF 129          

HSP 2 Score: 35.4242 bits (80), Expect = 5.682e-33
Identity = 19/40 (47.50%), Postives = 26/40 (65.00%), Query Frame = 1
Query:  535 GLNFERNREEGVDSVRFPKLMMSSGPLPQPVREFGVTFHS 654
            G++F +N E G+DS RF +L+MSSG +        VTFHS
Sbjct:  126 GIDFVKNNEFGIDSKRFAELLMSSG-IVLNENVHWVTFHS 164          
BLAST of DY260395 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.214e-30
Identity = 63/126 (50.00%), Postives = 85/126 (67.46%), Query Frame = 3
Query:  171 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDVATDAHAPDSIEPLRTAGIEF 545
            REVW  NL  EF LI +++D++ +I+MDTEFPG+V +P    +T  Y        +Y+ LK NVD L LIQVGLT SD +GNLP  G+   +KF IW+FNFR+F++  D +A +SIE LR  GI+F
Sbjct:   13 REVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKP---VATFKYNNDL----NYRTLKENVDLLKLIQVGLTFSDENGNLPTCGT---DKFCIWQFNFREFNIGEDIYASESIELLRQCGIDF 128          

HSP 2 Score: 37.3502 bits (85), Expect = 3.214e-30
Identity = 19/39 (48.72%), Postives = 28/39 (71.79%), Query Frame = 1
Query:  535 GLNFERNREEGVDSVRFPKLMMSSGPLPQPVREFGVTFH 651
            G++F++N E+G+D VRF +LMMSSG +      + VTFH
Sbjct:  125 GIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISW-VTFH 162          
BLAST of DY260395 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.835e-28
Identity = 63/125 (50.40%), Postives = 84/125 (67.20%), Query Frame = 3
Query:  171 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIEPLRTAGIE 542
            REVW  NLE E  LI Q ID +P+++MDTEFPG+V +    +P+  PY    +   +Y  LK+NV+ L LIQ+GLTLSD  GNLP  G+  N + IW+FNFR+F+V +D  A DSIE LR + I+
Sbjct:   17 REVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYE--YNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGT--NKQCIWQFNFREFNVISDMFALDSIELLRKSAID 137          

HSP 2 Score: 30.0314 bits (66), Expect = 4.835e-28
Identity = 16/38 (42.11%), Postives = 24/38 (63.16%), Query Frame = 1
Query:  538 LNFERNREEGVDSVRFPKLMMSSGPLPQPVREFGVTFH 651
            ++ E+N E GVD+ RF +L+M SG +    +   VTFH
Sbjct:  136 IDLEKNNECGVDAKRFAELLMGSGVVLND-KIHWVTFH 172          
BLAST of DY260395 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.068e-27
Identity = 59/125 (47.20%), Postives = 82/125 (65.60%), Query Frame = 3
Query:  171 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIEPLRTAGIE 542
            REVW  NL+ E +LI  V+D +P+++MDTEFPG+V RP     S   Y        HY+ LK+NV+ L +IQ+GLT S+  GNLP  G+  +   IW+FNFR+FD+ +D  A DSIE L+ +GI+
Sbjct:   13 REVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY--------HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGT--DKYCIWQFNFREFDLDSDIFALDSIELLKQSGID 127          

HSP 2 Score: 31.9574 bits (71), Expect = 1.068e-27
Identity = 17/40 (42.50%), Postives = 25/40 (62.50%), Query Frame = 1
Query:  535 GLNFERNREEGVDSVRFPKLMMSSGPLPQPVREFGVTFHS 654
            G++  +N  +G+DS RF +L+MSSG +        VTFHS
Sbjct:  125 GIDLAKNTLDGIDSKRFAELLMSSG-IVLNENVHWVTFHS 163          
BLAST of DY260395 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.996e-22
Identity = 58/126 (46.03%), Postives = 80/126 (63.49%), Query Frame = 3
Query:  171 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIEPLRTAGIEF 545
            R+VW++NL+ E  LI  +I+RYP +SMDTEFPG+V RP  V  S+  Y        HY+ L++NVD+L +IQ+GL LSD  GN P           W+FNF  F++  D +AP+SIE L  +GI+F
Sbjct:   23 RDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDY--------HYQTLRANVDSLKIIQIGLALSDEEGNAP------VEACTWQFNF-TFNLQDDMYAPESIELLTKSGIDF 133          
BLAST of DY260395 vs. ExPASy Swiss-Prot
Match: POP2_YEAST (Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae GN=POP2 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.307e-20
Identity = 54/125 (43.20%), Postives = 77/125 (61.60%), Query Frame = 3
Query:  171 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIEPLRTAGIEF 545
            R+VW SNL SEF +I Q++ +Y  +S+ TEF G + RP         FR  K   HY+ +++NVD LN IQ+GL+LSD++GN PD     N    W+FNF +FD   +  + +S+E LR +GI F
Sbjct:  161 RDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGT------FRS-KVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPD-----NGPSTWQFNF-EFDPKKEIMSTESLELLRKSGINF 272          

HSP 2 Score: 29.261 bits (64), Expect = 1.307e-20
Identity = 11/25 (44.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:  535 GLNFERNREEGVDSVRFPKLMMSSG 609
            G+NFE++   G+D   F +L+M SG
Sbjct:  269 GINFEKHENLGIDVFEFSQLLMDSG 293          
BLAST of DY260395 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.351e-18
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 3
Query:  174 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIEPLRTAGIEF 545
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIE L T+GI+F
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQF 123          
BLAST of DY260395 vs. ExPASy Swiss-Prot
Match: CNOT7_HUMAN (CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 3.351e-18
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 3
Query:  174 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIEPLRTAGIEF 545
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIE L T+GI+F
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQF 123          
The following BLAST results are available for this feature:
BLAST of DY260395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
CAF1I_ARATH2.045e-4668.00Probable CCR4-associated factor 1 homolog 9 OS=Ara... [more]
CAF1K_ARATH3.474e-4664.00Probable CCR4-associated factor 1 homolog 11 OS=Ar... [more]
CAF1G_ARATH5.682e-3352.38Probable CCR4-associated factor 1 homolog 7 OS=Ara... [more]
CAF1J_ARATH3.214e-3050.00Probable CCR4-associated factor 1 homolog 10 OS=Ar... [more]
CAF1B_ARATH4.835e-2850.40Probable CCR4-associated factor 1 homolog 2 OS=Ara... [more]
CAF1F_ARATH1.068e-2747.20Probable CCR4-associated factor 1 homolog 6 OS=Ara... [more]
CAF1_SCHPO4.996e-2246.03Poly(A) ribonuclease pop2 OS=Schizosaccharomyces p... [more]
POP2_YEAST1.307e-2043.20Poly(A) ribonuclease POP2 OS=Saccharomyces cerevis... [more]
CNOT7_MOUSE3.351e-1843.20CCR4-NOT transcription complex subunit 7 OS=Mus mu... [more]
CNOT7_HUMAN3.351e-1843.20CCR4-NOT transcription complex subunit 7 OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YF20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260395 ID=DY260395; Name=DY260395; organism=Citrus clementina; type=EST; length=1222bp
CTCTCAAGCAACAGCAGTTACCAGCAACAGTAAAGACTTTCAAATCTCAC
TTGCGAAGCGTCGAGCTGCAAGCTATTAGCTGACGATCATCACTCATCAT
GGGAGCTGGAGATTTTTCTACGGATTTAGATTCAAGCTCAAATTCCAGCT
CATCGAATTCGATTATAATACGCGAAGTCTGGGCGTCTAATTTGGAATCC
GAATTCGAACTCATCAGCCAAGTCATCGATCGGTACCCTTTTATTTCCAT
GGACACCGAATTCCCCGGTCTTGTCTACCGACCCGATGTGGACCCCTCCA
CCAGGCCTTACTTCCGTCAACGCAAGCCGTCCGATCACTACAAGGTTTTG
AAATCCAACGTCGACGCCTTGAACTTGATCCAGGTGGGCCTCACTCTCTC
TGACTCCTCCGGTAACTTGCCGGATTTGGGCTCCGGGGGCAACAATAAAT
TCATCTGGGAGTTCAACTTCCGGGACTTCGATGTCGCGACTGACGCCCAC
GCCCCGGATTCAATAGAACCTCTGAGAACTGCGGGGATTGAATTTTGAGC
GCAACAGGGAGGAAGGGGTTGACTCGGTTCGGTTCCCCAAGTTGATGATG
TCCTCAGGACCCCTCCCGCAACCAGTCCGTGAATTTGGGGTCACGTTCCA
CAGCTCCGCACCAATTATCGGGTACCCGGGTTAAAAACCTCTCGGACCAG
GGACATCGATCCGAGAGGAATAAACAAATCACTTGCACGGCCCACCCGGC
TGCTAAAATCAGATACCATACTCATCTAACATCAAAGCCCGTACCTCACT
CATCTTCACACAACTTTGCAGCGCAGCCACTAACACCTAAGCCCCTAGTC
ACCTGACAATTCCAATAAAAGATGATCACTCAATCTATTACCCACAACCC
GCCAACCCCTCCCTCCCCACTTGACAGACTCCACTACCACCACATCCTAA
GTACTCTCACCTACCTCACCGAAACAACACCATAACACTAATGACTACTA
CACACCAACAAACCCCACGATCTTAACCAGACCCACTCAAGCACACCCGT
ACCACCACTACTAATCCACACCACATCTGACTGCTGCAACCCTACGCCCC
TCAGCGCTCCCTCAACCTCGACCAACATGCTATGCATATCAACGACTATA
TAGCCCCCAACAGATCCCAAACACCCCTGCACAAACACTACAGATCTCAA
TAATCAATACATACACCAGCCT
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