DY260396

Overview
NameDY260396
Unique NameDY260396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1209
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260396_ssr5 microsatellite DY260396_ssr5:5..18. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260396 vs. ExPASy Swiss-Prot
Match: CAX1_ARATH (Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana GN=CAX1 PE=1 SV=3)

HSP 1 Score: 216.083 bits (549), Expect = 8.342e-62
Identity = 111/156 (71.15%), Postives = 130/156 (83.33%), Query Frame = 1
Query:  193 KKSDLTLVSKIPFPCLRRCLANIQEVILGTKLSVLFPAIPLTIIGQCFGFAEPWVFTLSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALY*RKIDVVKYSLLGSIPPNLLLVLGTSLFCERIANLIKEQKSHRKQAEVN 660
            KKSDL ++ K+P+  L+  L+N+QEVILGTKL++LFPAIP  II    G ++PW+F LSLLGLTPLAERVSFLTEQ+AFYTGPT+GGLLNATCGNATELIIAI AL   K+ VVKYSLLGSI  NLLLVLGTSLFC  IAN+ +EQ+  RKQA+VN
Sbjct:   44 KKSDLRVIQKVPYKGLKDFLSNLQEVILGTKLAILFPAIPAAIICTYCGVSQPWIFGLSLLGLTPLAERVSFLTEQLAFYTGPTLGGLLNATCGNATELIIAILALTNNKVAVVKYSLLGSILSNLLLVLGTSLFCGGIANIRREQRFDRKQADVN 199          

HSP 2 Score: 43.8986 bits (102), Expect = 8.342e-62
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 3
Query:   93 TEPW-LMENGSVKVLNK----EIRHGKTAHNMSSSSLRKK 197
            TEPW + ENG+  +  K    E+R G+TAHNMSSSSLRKK
Sbjct:    6 TEPWSVAENGNPSITAKGSSRELRLGRTAHNMSSSSLRKK 45          
BLAST of DY260396 vs. ExPASy Swiss-Prot
Match: CAX3_ARATH (Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.576e-52
Identity = 109/156 (69.87%), Postives = 126/156 (80.77%), Query Frame = 1
Query:  193 KKSDLTLVSKIPFPCLRRCLANIQEVILGTKLSVLFPAIPLTIIGQCFGFAEPWVFTLSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALY*RKIDVVKYSLLGSIPPNLLLVLGTSLFCERIANLIKEQKSHRKQAEVN 660
            KKSDL LV K+P   L+  L+N+QEVILGTKL++LF AIPL I+   + +  P +F LSL+GLTPLAERVSFLTEQ+AFYTGPTVGGLLNATCGNATELIIAI AL   K+ VVKYSLLGSI  NLLLVLGTSLF   IAN+ +EQ+  RKQA+VN
Sbjct:   44 KKSDLRLVQKVPCKTLKNILSNLQEVILGTKLTLLFLAIPLAILANSYNYGRPLIFGLSLIGLTPLAERVSFLTEQLAFYTGPTVGGLLNATCGNATELIIAILALANNKVAVVKYSLLGSILSNLLLVLGTSLFFGGIANIRREQRFDRKQADVN 199          
BLAST of DY260396 vs. ExPASy Swiss-Prot
Match: CAX1A_ORYSJ (Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 3.511e-52
Identity = 109/157 (69.43%), Postives = 122/157 (77.71%), Query Frame = 1
Query:  193 KKSDLTLVSKIPFPCLRRCLANIQEVILGTKLSVLFPAIPLTIIGQCFGFAEPWVFTLSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALY*RKIDVVKYSLLGSIPPNLLLVLGTSLFCERIANLIKEQKSHRKQAEVNS 663
            KKSD  LV K+P   LR  LAN+QEV L TKL+VLFPA+PL I  QCF F + WVF LSLLGL PLAERVSFLTEQIA YTGPTVGGLLNATCGNATELIIA+FAL   KI+VVK SLLGS+  NLLLVLGTSLFC  + NL   Q   R Q++V++
Sbjct:   35 KKSDAALVRKVPVAPLRPLLANLQEVFLATKLAVLFPAVPLAIAAQCFRFDQVWVFALSLLGLIPLAERVSFLTEQIALYTGPTVGGLLNATCGNATELIIALFALLKGKIEVVKCSLLGSVLSNLLLVLGTSLFCGGVVNLGARQPYDRNQSDVST 191          
BLAST of DY260396 vs. ExPASy Swiss-Prot
Match: CAX4_ARATH (Vacuolar cation/proton exchanger 4 OS=Arabidopsis thaliana GN=CAX4 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 3.075e-48
Identity = 98/157 (62.42%), Postives = 122/157 (77.71%), Query Frame = 1
Query:  193 KKSDLTLVSKIPFPCLRRCLANIQEVILGTKLSVLFPAIPLTIIGQCFGFAEPWVFTLSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALY*RKIDVVKYSLLGSIPPNLLLVLGTSLFCERIANLIKEQKSHRKQAEVNS 663
            K+SDL L+S++ +  +RR L N+QEV+LGTKL +LFPA+PL ++   +     WVF LSLLGLTPLAER+SFLTEQIAF+TGPTVGGL+NATCGNATE+IIAI A+  RK+ +VK SLLGSI  NLL VLGTSLF   I+NL K Q    +Q ++NS
Sbjct:   45 KRSDLKLISRVRWEFMRRILTNLQEVLLGTKLFILFPAVPLAVVAHRYDCPRAWVFALSLLGLTPLAERISFLTEQIAFHTGPTVGGLMNATCGNATEMIIAILAVGQRKMRIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQSFDPRQGDMNS 201          
BLAST of DY260396 vs. ExPASy Swiss-Prot
Match: CAX1B_ORYSJ (Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica GN=CAX1b PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 7.839e-44
Identity = 98/157 (62.42%), Postives = 114/157 (72.61%), Query Frame = 1
Query:  193 KKSDLTLVSKIPFPCLRRCLANIQEVILGTKLSVLFPAIPLTIIGQCFGFAEPWVFTLSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALY*RKIDVVKYSLLGSIPPNLLLVLGTSLFCERIANLIKEQKSHRKQAEVNS 663
            K SD +L+ K+P   LR  LAN+ +V+L T+L +LFPA+ L I      F + WVF LSL+GL PLAER+SFLTEQIAFYTGPTVGGLLNAT GN TE+IIA+ AL   KI+VVK SLLGSI  NLLLVLGTSLF   IANL   Q    KQA VN+
Sbjct:   43 KSSDASLLHKVPCAALRSLLANLNDVLLTTRLFLLFPAVLLAIAATYLHFGQVWVFVLSLIGLVPLAERLSFLTEQIAFYTGPTVGGLLNATFGNVTEVIIALLALREGKIEVVKCSLLGSILSNLLLVLGTSLFLAGIANLRAHQPYDTKQAHVNT 199          
BLAST of DY260396 vs. ExPASy Swiss-Prot
Match: CAX1C_ORYSJ (Vacuolar cation/proton exchanger 1c OS=Oryza sativa subsp. japonica GN=CAX1c PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 4.606e-36
Identity = 81/147 (55.10%), Postives = 104/147 (70.75%), Query Frame = 1
Query:  232 PCLRRCL----ANIQEVILGTKLSVLFPAIPLTIIGQCFGFAEPWVFTLSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALY*RKIDVVKYSLLGSIPPNLLLVLGTSLFCERIANLIKEQKSHRKQAEVN 660
            P LRR L    A +QEV+LGTKL  LF A+PL +  +       WVF  SL+GL PLAERVSFL+E IA   GPT GG++NATCGN  ELIIA+FAL+  K++++K+SLLGSI  NLLLVLG+SL    I N+ KE+   ++QA+V+
Sbjct:   59 PLLRRLLGGPAAQLQEVLLGTKLYPLFSAVPLAVAAESLRLGRVWVFAFSLIGLAPLAERVSFLSEHIANTVGPTAGGIMNATCGNVPELIIALFALHKNKMEILKWSLLGSILSNLLLVLGSSLLFGGIVNIGKERPLDKRQADVS 205          
BLAST of DY260396 vs. ExPASy Swiss-Prot
Match: CAX2_ORYSJ (Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 9.303e-29
Identity = 70/142 (49.30%), Postives = 97/142 (68.31%), Query Frame = 1
Query:  241 RRCLANIQEVILGTKLSVLFPAIPLTIIGQCFGFA-EPWVFTLSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALY*RKIDVVKYSLLGSIPPNLLLVLGTSLFCERIANLIKEQKSHRKQAEVNS 663
            RR L +++ VIL  K++VL P  PL ++        + WVF  SL+G+TPLAER+ + TEQ+A YTGPT+GGLLNAT GNATE+II+++AL    I VV+ SLLGSI  N+LLVLG + F   + +  ++Q  ++  A VNS
Sbjct:   58 RRALTSVRVVILQAKINVLLPFGPLAVMLHYLSANHQGWVFLFSLIGITPLAERLGYATEQLALYTGPTIGGLLNATFGNATEMIISLYALKNGMIRVVQQSLLGSILSNMLLVLGCAFFAGGLVHPSRDQVFNKASAVVNS 199          
BLAST of DY260396 vs. ExPASy Swiss-Prot
Match: CAX5_ARATH (Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.072e-28
Identity = 73/138 (52.90%), Postives = 92/138 (66.67%), Query Frame = 1
Query:  250 LANIQEVILGTKLSVLFPAIPLTIIGQCFGFAEPWVFTLSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALY*RKIDVVKYSLLGSIPPNLLLVLGTSLFCERIANLIKEQKSHRKQAEVNS 663
            L + + VIL  KL++L P  PL I+       + W+F LSL+G+TPLAER+ + TEQ+A YTG TVGGLLNAT GN TELII+IFAL    I VV+ +LLGSI  N+LLVLG + FC  +    KEQ   +  A VNS
Sbjct:   65 LQSFKIVILSNKLNLLLPFGPLAILLHYLTDNKGWIFLLSLVGITPLAERLGYATEQLACYTGSTVGGLLNATFGNVTELIISIFALKSGMIRVVQLTLLGSILSNMLLVLGCAFFCGGLVFSQKEQVFDKGNAVVNS 202          
BLAST of DY260396 vs. ExPASy Swiss-Prot
Match: CAX2_ARATH (Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 2.072e-28
Identity = 73/138 (52.90%), Postives = 94/138 (68.12%), Query Frame = 1
Query:  250 LANIQEVILGTKLSVLFPAIPLTIIGQCFGFAEPWVFTLSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALY*RKIDVVKYSLLGSIPPNLLLVLGTSLFCERIANLIKEQKSHRKQAEVNS 663
            L +I+ VI   KL++L P  PL I+      ++ WVF L+L+G+TPLAER+ + TEQ+A YTGPTVGGLLNAT GN TELII+IFAL    I VV+ +LLGSI  N+LLVLG + FC  +    K+Q   +  A VNS
Sbjct:   65 LNSIKIVIFCNKLNLLLPFGPLAILVHYMIDSKGWVFLLTLVGITPLAERLGYATEQLACYTGPTVGGLLNATFGNVTELIISIFALKNGMIRVVQLTLLGSILSNMLLVLGCAFFCGGLVFYQKDQVFDKGIATVNS 202          
BLAST of DY260396 vs. ExPASy Swiss-Prot
Match: CAX3_ORYSJ (Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 5.105e-27
Identity = 72/138 (52.17%), Postives = 92/138 (66.67%), Query Frame = 1
Query:  250 LANIQEVILGTKLSVLFPAIPLTIIGQCFGFAEPWVFTLSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALY*RKIDVVKYSLLGSIPPNLLLVLGTSLFCERIANLIKEQKSHRKQAEVNS 663
            L +I+ VI  +KL++L P  P +II          VF  S+LG+TPLAER+ + TEQ+A YTGPTVGGLLNAT GNATE+IIAI+AL    I VV+ SLLGSI  N+LLV+G + F   I +  K+Q   +  A VNS
Sbjct:   41 LRSIRIVIFTSKLNLLLPFGPASIILHYTTSRHGLVFLFSMLGITPLAERLGYATEQLAIYTGPTVGGLLNATFGNATEMIIAIYALKNGMIRVVQQSLLGSILSNMLLVMGCAFFAGGIVHRNKDQVFSKATAVVNS 178          
The following BLAST results are available for this feature:
BLAST of DY260396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CAX1_ARATH8.342e-6271.15Vacuolar cation/proton exchanger 1 OS=Arabidopsis ... [more]
CAX3_ARATH1.576e-5269.87Vacuolar cation/proton exchanger 3 OS=Arabidopsis ... [more]
CAX1A_ORYSJ3.511e-5269.43Vacuolar cation/proton exchanger 1a OS=Oryza sativ... [more]
CAX4_ARATH3.075e-4862.42Vacuolar cation/proton exchanger 4 OS=Arabidopsis ... [more]
CAX1B_ORYSJ7.839e-4462.42Vacuolar cation/proton exchanger 1b OS=Oryza sativ... [more]
CAX1C_ORYSJ4.606e-3655.10Vacuolar cation/proton exchanger 1c OS=Oryza sativ... [more]
CAX2_ORYSJ9.303e-2949.30Vacuolar cation/proton exchanger 2 OS=Oryza sativa... [more]
CAX5_ARATH2.072e-2852.90Vacuolar cation/proton exchanger 5 OS=Arabidopsis ... [more]
CAX2_ARATH2.072e-2852.90Vacuolar cation/proton exchanger 2 OS=Arabidopsis ... [more]
CAX3_ORYSJ5.105e-2752.17Vacuolar cation/proton exchanger 3 OS=Oryza sativa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YF21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260396 ID=DY260396; Name=DY260396; organism=Citrus clementina; type=EST; length=1209bp
AAAAATATATATATATATTTTTTATTATTAATTGTTTCTATCCTTCGTGT
TTTTTTTTTTCTTTCAATTGCATTTGTGAAAAAATGGCTTCAACTGAACC
ATGGCTGATGGAGAATGGCAGCGTGAAGGTTTTGAACAAGGAGATCAGAC
ATGGAAAAACTGCACACAACATGTCATCCTCCTCGTTGAGGAAAAAAATC
CGATCTTACCCTTGTCTCAAAAATTCCATTCCCTTGTCTTAGACGGTGTC
TGGCTAATATCCAAGAGGTCATTTTGGGGACTAAACTTTCAGTTCTCTTT
CCCGCCATTCCTTTAACCATAATCGGCCAGTGTTTTGGATTTGCAGAACC
ATGGGTATTCACTCTGAGCTTACTAGGACTGACTCCTCTGGCTGAACGTG
TCAGCTTCTTGACAGAGCAAATTGCTTTCTACACTGGCCCAACAGTGGGG
GGATTATTGAACGCGACATGCGGCAATGCCACAGAGCTCATCATAGCAAT
TTTTGCCCTATACTAACGTAAAATTGACGTGGTCAAATATTCCCTTTTGG
GTTCCATTCCCCCAAACCTTCTTCTGGTTCTAGGCACTTCGCTCTTCTGT
GAACGGATTGCCAATCTCATAAAGGAACAAAAATCCCATAGAAAACAAGC
CGAAGTCAACTCGCTGCTACCGCCGCTGGGATTGCTTCTCCACATGTCAC
CATTGCCAATCAAAAAACCCCGCCCCCCCCACAGAAATTACCCGCCAAGG
GCGACCCCTAAATCAATAAGAACCCACAACATTTGAAATGACCGAATGGA
CCCTCCGCCAAACCCCTCCACCCCTTTGAGACACCCCCCGAAATTTCTCA
ACCCTCCCAAAAGATTCCACAAAAAACAAAACAATTGAACCAAAAAAAAC
CCCCGTGATATGGGTGACGAAAGTCAAATACCCAGCGCTAGGTCCAGAAA
AACAACACTCACCCCCCTTTAAACTTCAACAACTCTTAACTGGCCTCCCT
CTCGTGGCATCATAAATAATTTCTATGCGGGCTTTCTGGCCCCACCTCCT
ACACCGGTCCCCCACTCTCCCCCACTTTCGTCACCGCCACCATCTACACT
CCTCGTCAGTCGCCCACTGATCCATATACTTCCTCCGCCACTCAACCAAA
TTACGCACGGCCACATATCTCTCACCTCACCCACACCGCCCTCCCCCACC
CCCCCATGA
back to top