DY260401

Overview
NameDY260401
Unique NameDY260401
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1162
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1515 contig Ccv1_Contig1515:1..1162. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260401 vs. ExPASy Swiss-Prot
Match: DERL1_ARATH (Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 5.959e-86
Identity = 159/228 (69.74%), Postives = 179/228 (78.51%), Query Frame = 3
Query:   21 LALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQ--------------------------PERTTGVAFRGRSYRLSD 626
            +AL  +LV  +FQ+WRLITN FFLG FSINFGIRLLMIARYGV LEKGPFERRTADFLWMMIFG+ +LLVLS IP F + FLG+SLVFML+Y+WSREFPN+ I++YGLVTLKAFYLPWAMLALDVIFGSP++PDLLGIIAGHLYYFLTVLHPLATGKN LKTPKWV K+VARWRIGAP  +  Q                          P  ++  AFRGRSYRL+D
Sbjct:   39 IALIPELVLKQFQIWRLITNLFFLGGFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSFTLLVLSVIPFFWTPFLGVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGIIAGHLYYFLTVLHPLATGKNYLKTPKWVNKIVARWRIGAPVASVRQAGGVGAAGPGAGGGVGGGGAYSSARAPPESSNTAFRGRSYRLTD 266          
BLAST of DY260401 vs. ExPASy Swiss-Prot
Match: DERL1_ORYSJ (Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 PE=2 SV=2)

HSP 1 Score: 299.286 bits (765), Expect = 2.865e-80
Identity = 148/209 (70.81%), Postives = 169/209 (80.86%), Query Frame = 3
Query:    3 LLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQP--ERTTGVAFRGRSYRLS 623
            +L+   LAL Y  VF KFQ+WRL T+FFFLG FSINFGIRLLMIARYGV LEKG FE+RTADFLWMMIFGA+SLL LSAIP    YFLG+ +V ML+YVWSRE+PNSQI++YGLV L++FYLPWAML LDVIFGS ++P LLGI+ GH YYFL+VLHPLATGKN LKTP WV K+VAR+RIG  A    +P    T   AFRGRSYRLS
Sbjct:   33 ILNPPFLALYYPFVFKKFQIWRLFTSFFFLGKFSINFGIRLLMIARYGVQLEKGAFEKRTADFLWMMIFGAISLLALSAIPFLDIYFLGVPMVSMLLYVWSREYPNSQISMYGLVQLRSFYLPWAMLGLDVIFGSEILPGLLGILVGHTYYFLSVLHPLATGKNYLKTPMWVHKIVARFRIGVQANAPVRPAAANTGSGAFRGRSYRLS 241          
BLAST of DY260401 vs. ExPASy Swiss-Prot
Match: DER11_MAIZE (Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2)

HSP 1 Score: 291.967 bits (746), Expect = 4.573e-78
Identity = 145/205 (70.73%), Postives = 170/205 (82.93%), Query Frame = 3
Query:   21 LALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQPERT----TGVAFRGRSYRLS 623
            L L+Y LVF KF++WRL+T+FFFL  FS+ FGIRLLMIARYGV LEKG F++RTADFLWMMIFGA+SLLVLS IP+F S+FLGI +V ML+YVWSRE PN+QINIYGLV L++FYLPWAML LDVIFGS L+P LLGI+ GHLYYF  VLHPLATGK+ LKTPKWV K+VAR+RIG  A +  +P       +GV FRGRSYRL+
Sbjct:   39 LYLDYPLVFKKFEIWRLLTSFFFLAPFSMKFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAISLLVLSIIPLFNSFFLGIPMVSMLLYVWSRENPNAQINIYGLVQLRSFYLPWAMLLLDVIFGSSLMPGLLGIMVGHLYYFFAVLHPLATGKSYLKTPKWVHKIVARFRIGMQANSPVRPPANGNSGSGV-FRGRSYRLN 242          
BLAST of DY260401 vs. ExPASy Swiss-Prot
Match: DER12_MAIZE (Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 5.973e-78
Identity = 148/211 (70.14%), Postives = 168/211 (79.62%), Query Frame = 3
Query:    3 LLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIG----APAINRAQPERTTGVAFRGRSYRLS 623
            +L+   L L Y  VF KF+VWR+ T+FFFLG FSINFGIRLLMIARYGV LEKG F++RTADFLWMMIFGA+SLLVLS IP   +Y LG+ +V MLVYVWSRE PN+QINIYG++ LKAFYLPW ML LDVIFGSPL+P LLGI+ GHLYY+  VLHPLATGKN LKTPKWV K+VAR+RIG    AP    A     TG AFRGRSYRL+
Sbjct:   33 ILNPLFLYLYYPRVFKKFEVWRIFTSFFFLGPFSINFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAISLLVLSVIPQLNTYVLGLPMVSMLVYVWSRENPNAQINIYGILQLKAFYLPWVMLLLDVIFGSPLMPGLLGIMVGHLYYYFAVLHPLATGKNYLKTPKWVHKIVARFRIGMQANAPVRAPANGNAGTG-AFRGRSYRLN 242          
BLAST of DY260401 vs. ExPASy Swiss-Prot
Match: DERL3_BOVIN (Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.260e-35
Identity = 76/165 (46.06%), Postives = 108/165 (65.45%), Query Frame = 3
Query:   39 LVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHP-LATGKNLLKTPKWVQKLV 530
            LVF KFQVWRLITNF F G    +F   +L + RY   LE+G F  RTADF++M +FG + + +L  +     +FLG +L  MLVYVWSR  P  ++N +GL+T +A +LPWA++ L ++ G+ ++ DLLGI  GH+YYFL  + P    GK LL TP +++ L+
Sbjct:   47 LVFRKFQVWRLITNFLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSL--FFLGQALTAMLVYVWSRRSPGVRVNFFGLLTFQAPFLPWALMGLPMLLGNSILVDLLGIAVGHVYYFLEDVFPNQPGGKRLLLTPSFLKLLL 209          
BLAST of DY260401 vs. ExPASy Swiss-Prot
Match: DERL3_HUMAN (Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 1.646e-35
Identity = 74/165 (44.85%), Postives = 109/165 (66.06%), Query Frame = 3
Query:   39 LVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHP-LATGKNLLKTPKWVQKLV 530
            LVF KFQVWRL+TNF F G    +F   +L + RY   LE+G F  RTADF++M +FG + + +L  +     +FLG +L+ MLVYVWSR  P  ++N +GL+T +A +LPWA++   ++ G+ ++ DLLGI  GH+YYFL  + P    GK LL+TP +++ L+
Sbjct:   47 LVFRKFQVWRLVTNFLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSL--FFLGQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGHIYYFLEDVFPNQPGGKRLLQTPGFLKLLL 209          
BLAST of DY260401 vs. ExPASy Swiss-Prot
Match: DERL2_DICDI (Probable derlin-2 homolog OS=Dictyostelium discoideum GN=derl2 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.646e-35
Identity = 74/175 (42.29%), Postives = 105/175 (60.00%), Query Frame = 3
Query:   21 LALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIF-----RSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLV 530
            L L + LVF K++ WRL TNFFF     +NF   +  + R+   LE+  F  R+AD+L+M IFG+  LL++ A   +     +  FL  S+ FM++YVWSR  PN  I+  GL T  A YLPW +L +  +F   L  DLLG +AGH YYFL   +PL + + LLKTP +++ L+
Sbjct:   40 LYLNFPLVFGKYEFWRLFTNFFFYDEIGMNFFFHMYFLVRHSRLLEESSFRGRSADYLFMWIFGSFLLLIMDAFLFYTKIVTKVLFLAPSIAFMVIYVWSRRNPNMHISFLGLFTFSAPYLPWVILIMGYLFNHDLTTDLLGAVAGHAYYFLEDAYPLISNRRLLKTPGFLKNLM 214          
BLAST of DY260401 vs. ExPASy Swiss-Prot
Match: DERL3_MOUSE (Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.179e-33
Identity = 73/165 (44.24%), Postives = 105/165 (63.64%), Query Frame = 3
Query:   39 LVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHP-LATGKNLLKTPKWVQKLV 530
            LVF KFQVWRLIT F F G     F   +L + RY   LE+G F  R ADF++M +FG + + +L  +     +FLG +L+ MLVYVWSR  P+ ++N +GL+  +A +LPWA++   ++ G+ +V DLLGI+ GH+YYFL  + P    GK LL TP  ++ L+
Sbjct:   47 LVFRKFQVWRLITTFLFFGPLGFGFFFNMLFVFRYCRMLEEGSFRGRKADFVFMFLFGGVLMTLLGFLGSL--FFLGQALMAMLVYVWSRRSPHVRVNFFGLLNFQAPFLPWALMGFSLLLGNSVVTDLLGILVGHIYYFLEDVFPNQPGGKRLLLTPSVLKLLL 209          
BLAST of DY260401 vs. ExPASy Swiss-Prot
Match: DERL2_CAEEL (Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 1.540e-33
Identity = 71/167 (42.51%), Postives = 106/167 (63.47%), Query Frame = 3
Query:   21 LALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLAT-GKNLLKTPKWV 518
            L   ++L+  K+Q WRLIT+F F G+F  +F   ++   RY + LE+G F  R ADF++M +FGA+ L++LS I + +  FLG +   MLVY+WSR  P  Q+N +G++T  A YLPW +L   ++ G+  V D +GI  GH+Y+FL  + P    GK  LKTP+W+
Sbjct:   39 LYFNWELIIRKYQFWRLITSFCFFGSFGFSFLFNMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAV-LMILSGIFV-QILFLGQAFTIMLVYIWSRRNPMIQMNFFGVLTFTAPYLPWVLLLFSLLLGNNAVVDFMGIACGHIYFFLEDVFPFQEHGKRFLKTPQWL 203          
BLAST of DY260401 vs. ExPASy Swiss-Prot
Match: DERL2_ORYSJ (Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 3.431e-33
Identity = 76/180 (42.22%), Postives = 105/180 (58.33%), Query Frame = 3
Query:   21 LALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSL----LVLSAIPIF-----RSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVA 533
            L L  KLV   +++WRL+TNF +     ++F   +  +ARY   LE+  F  RTADF +M++FGA  L    L+   IP       R  FL  SL FM+VYVWS+  P   ++  GL T  A YLPW +L   ++ GS    DLLG+IAGH+YYFL  ++P  TG+  LKTP +++ L A
Sbjct:   40 LYLNPKLVVQHYEIWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGMIAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFA 219          
The following BLAST results are available for this feature:
BLAST of DY260401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
DERL1_ARATH5.959e-8669.74Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1[more]
DERL1_ORYSJ2.865e-8070.81Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 P... [more]
DER11_MAIZE4.573e-7870.73Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2[more]
DER12_MAIZE5.973e-7870.14Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1[more]
DERL3_BOVIN1.260e-3546.06Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1[more]
DERL3_HUMAN1.646e-3544.85Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2[more]
DERL2_DICDI1.646e-3542.29Probable derlin-2 homolog OS=Dictyostelium discoid... [more]
DERL3_MOUSE1.179e-3344.24Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1[more]
DERL2_CAEEL1.540e-3342.51Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 S... [more]
DERL2_ORYSJ3.431e-3342.22Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YG02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260401 ID=DY260401; Name=DY260401; organism=Citrus clementina; type=EST; length=1162bp
GATTATTGGATCTTTCTATTCTTGCATTAGAATACAAGCTCGTGTTTTCA
AAATTTCAGGTATGGAGGTTGATAACAAATTTCTTTTTCCTTGGAACTTT
TTCAATCAATTTTGGGATTCGCCTTTTGATGATAGCGAGATATGGAGTTA
ACCTGGAGAAGGGACCATTTGAAAGGCGTACAGCAGATTTTTTATGGATG
ATGATTTTTGGAGCCTTATCTCTGTTGGTGTTGTCAGCCATCCCCATATT
TCGATCTTATTTCCTAGGGATATCACTTGTTTTTATGCTTGTCTATGTCT
GGAGTAGAGAATTCCCAAATTCTCAGATCAATATATATGGCCTCGTGACA
CTTAAGGCATTTTATCTACCATGGGCTATGCTTGCTTTGGACGTCATTTT
TGGTTCACCCCTTGTACCAGACCTGCTGGGAATCATAGCAGGACATCTGT
ATTACTTTTTGACTGTCTTACATCCACTTGCAACTGGAAAGAACTTGTTG
AAGACTCCAAAATGGGTACAAAAACTGGTGGCGAGGTGGAGAATCGGAGC
TCCAGCTATCAATCGTGCCCAGCCTGAAAGGACAACTGGTGTGGCTTTCA
GAGGAAGATCATATCGTTTAAGCGATTGATTATAATATGGCAACGTTCTT
GTAAATTTTTCCAGGTGATGCACCTGACAAAGGCAGCAAAGCCTTCCACC
CCGAAGAGCTGACAGTTCCAGAAAATTTCATTTTCCACTTTTTACAAATG
TTGGATACCATTGCTTCCCCAAAAAATTTAATTGTAAAGGGGAAAAAAAA
AAACTTTTAACATCCAAAATTGCCAAGCCAATATTTTTGTGGTCAACCCA
AATTAATCTTATCGTTATAACGTGCGGGCAAAAAAAAAAAAAAAAAAAAA
CCCCCACCTTCCCCGGTCAAAATTGGCTTTATAAACAAAAACCATTCCTT
ATACCAATTTGTGGCCACACACAAACGGGCCCCCCACAGCCAAAATAAAC
ACCCTTTATTTTCCCCCCCCCCCCGAAATCCCCCCCCACCTCGACACCAC
TCAACACCGGGCCTACCCCTTTCTCCCCGCGCCCCCCGCCGCTCTCCCGC
CTCACCCCCCCACCCATCATCCCCCCTCAATATAAACCACACTAACAACA
AAACACTCACTT
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