DY260403

Overview
NameDY260403
Unique NameDY260403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1306
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1516 contig Ccv1_Contig1516:1..1306. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260403 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.582e-49
Identity = 89/121 (73.55%), Postives = 105/121 (86.78%), Query Frame = 1
Query:  208 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEEL 570
            M RGK+++KRIEN TNRQVT+SKRRNGLFKKA ELT+LCDAKVSI++ SST K HE+ISPS TTKQL DLYQKT+ VDLW+SHYEKM E L  +++VNR L+K+IRQRMGESLNDL  E+L
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDLYQKTVGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQL 121          

HSP 2 Score: 33.113 bits (74), Expect = 8.582e-49
Identity = 16/34 (47.06%), Postives = 24/34 (70.59%), Query Frame = 2
Query:  578 LEQDILDGLKIIRECKDQVLARQINTFQKKVTGV 679
            L +++ + LK+IRE K +V+  QI TF+KKV  V
Sbjct:  124 LMENVDNSLKLIRERKYKVIGNQIETFKKKVRNV 157          
BLAST of DY260403 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 2.917e-46
Identity = 85/121 (70.25%), Postives = 103/121 (85.12%), Query Frame = 1
Query:  208 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEEL 570
            M RGK+++KRIEN TNRQVT+SKRRNGLFKKA EL++LCDAKVSI++ SST K HEYISP+T TKQL D YQK + VDLWSSHYEKM E+L  + +VNR L+++IRQRMGESLNDL  E++
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKAVGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQI 121          

HSP 2 Score: 31.5722 bits (70), Expect = 2.917e-46
Identity = 16/34 (47.06%), Postives = 25/34 (73.53%), Query Frame = 2
Query:  578 LEQDILDGLKIIRECKDQVLARQINTFQKKVTGV 679
            L +D+ + LK+IRE K +V++ QI+T +KKV  V
Sbjct:  124 LIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNV 157          
BLAST of DY260403 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.025e-36
Identity = 73/121 (60.33%), Postives = 99/121 (81.82%), Query Frame = 1
Query:  208 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEEL 570
            M RGK+++KRIEN TNRQVT+SKRRNGLFKKA ELT+LCDA+VSI++ SS+ K HEYISP+TTTK+++DLYQ    VD+W++ YE+M E    + + NR L+ QI+QR+GE L++L ++EL
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQEL 121          
BLAST of DY260403 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 2.919e-36
Identity = 71/123 (57.72%), Postives = 91/123 (73.98%), Query Frame = 1
Query:  208 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTG 576
            MGRGK+E+KRIENATNRQVT+SKRR G+ KKARELT+LCDA+V+I++ SST K HE+ SPST  K + D YQ+ +   LW   YE M   L  ++ +NR L+ +IRQRMGE L+ L  +EL G
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQAIGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELRG 123          

HSP 2 Score: 26.5646 bits (57), Expect = 2.919e-36
Identity = 13/31 (41.94%), Postives = 19/31 (61.29%), Query Frame = 2
Query:  578 LEQDILDGLKIIRECKDQVLARQINTFQKKV 670
            LEQ++   LK +R  K  V+  Q  T++KKV
Sbjct:  124 LEQNVDAALKEVRHRKYHVITTQTETYKKKV 154          
BLAST of DY260403 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 5.264e-33
Identity = 69/122 (56.56%), Postives = 92/122 (75.41%), Query Frame = 1
Query:  208 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELT 573
            MGRGK+E+++IEN TNRQVTFSKRRNG+ KKA+ELT+LCDAKVS+L+ SST K H Y+SP  + K++ D YQK   VDLW   +E+M E    V ++N +L+++I +RMG  L  LTL EL+
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQKIEGVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVELS 122          
BLAST of DY260403 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.704e-29
Identity = 61/121 (50.41%), Postives = 88/121 (72.73%), Query Frame = 1
Query:  208 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEEL 570
            MGRGK+E+KRIEN++NRQVT+SKRRNG+ KKA+E+T+LCDAKVS++I  ++ K HEY SPSTT   +LD YQKT    LW + +E +   +  +++ N  ++ ++R   GE +N L  +EL
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQKTSGRRLWDAKHENLSNEIDRIKKENDNMQVKLRHLKGEDINSLNHKEL 121          
BLAST of DY260403 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.798e-26
Identity = 57/121 (47.11%), Postives = 84/121 (69.42%), Query Frame = 1
Query:  208 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEEL 570
            MGRGK+E+KRIEN++NRQVT+SKRRNG+ KKA+E+++LCDA VS++I +S+ K HE+ SPSTT   +LD Y K     LW   +E +   +  V++ N  ++ ++R   GE +  L  +EL
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKEL 121          
BLAST of DY260403 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.369e-25
Identity = 55/121 (45.45%), Postives = 84/121 (69.42%), Query Frame = 1
Query:  208 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEEL 570
            MGRGK+E+KRIEN+TNRQVTFSKRR+G+ KKARE+++LCDA+V ++I SS  K ++Y SP T+  ++L+ YQ      LW   ++ +   +  +++ N  ++ ++R   GE LN L  +EL
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQTNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKEL 121          
BLAST of DY260403 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.040e-25
Identity = 57/121 (47.11%), Postives = 80/121 (66.12%), Query Frame = 1
Query:  208 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEEL 570
            MGRGK+E+KRIENA NR VTFSKRRNGL KKA+E+T+LCDAKV+++I +S  K  +Y  PS     +LD YQK     LW + +E +   +  +++ N  L+ ++R   GE +  L L+ L
Sbjct:    1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLSGKKLWDAKHENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKNL 121          
BLAST of DY260403 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.834e-24
Identity = 57/121 (47.11%), Postives = 81/121 (66.94%), Query Frame = 1
Query:  208 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEEL 570
            MGRGK+E+KRIEN TNRQVTFSKRR GL KKA EL++LCDA++ ++I SS+ K  EY S S++ K++++ YQK     +     + +   +  ++  N  L+  IR+ MGE L  LT+ EL
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQKVSGARITEYDNQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTEL 121          
The following BLAST results are available for this feature:
BLAST of DY260403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
MADS1_PETHY8.582e-4973.55Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
DEFA_ANTMA2.917e-4670.25Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
AP3_ARATH1.025e-3660.33Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
MAD16_ORYSJ2.919e-3657.72MADS-box transcription factor 16 OS=Oryza sativa s... [more]
CMB2_DIACA5.264e-3356.56MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
MADS2_PETHY2.704e-2950.41Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
GLOB_ANTMA2.798e-2647.11Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]
MADS2_ORYSJ2.369e-2545.45MADS-box transcription factor 2 OS=Oryza sativa su... [more]
PIST_ARATH4.040e-2547.11Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
GGM13_GNEGN5.834e-2447.11MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YG05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260403 ID=DY260403; Name=DY260403; organism=Citrus clementina; type=EST; length=1306bp
AAGAAGTTTTGCAGTCACCTCATGGTCTCGGTCTCTGAATAGATCGGCAC
TCGGCAGTCGGCAGGGAGTTTCTTGATGTCAAAATGGATTAACTCTATCA
GAGTGTAACTACACAAAAGTTAAAGGGGGTTTATGTAAAAAATCACCAAC
TCTTTCAGCTTCTCCTATACAGCACAGGCACAACAGTGCAGTAGCAAGTG
GGGGAAAATGGGTAGAGGAAAGATGGAGATGAAGAGGATTGAGAACGCAA
CGAACAGGCAGGTGACATTCTCAAAGAGACGAAATGGGCTTTTCAAGAAA
GCTCGTGAACTCACCATTCTCTGTGATGCCAAGGTTTCCATTCTCATCTG
TTCAAGCACTGCTAAGGCCCATGAATACATCAGCCCTTCCACTACAACAA
AGCAATTGCTTGATTTGTATCAGAAGACTTTAAGAGTCGATCTTTGGAGC
TCTCATTATGAGAAAATGCTAGAGAATCTGGGGGCTGTGGAACAAGTGAA
TAGGATTCTGAAGAAGCAAATTAGGCAGAGGATGGGTGAAAGCTTGAACG
ATCTGACCTTGGAGGAATTGACTGGTCCTTGAGCAAGATATCCTTGATGG
TTTAAAGATTATTCGTGAATGCAAGGATCAGGTGCTCGCGAGACAAATTA
ATACTTTTCAGAAAAAGGTAACGGGGGTGCCAAAAGACAAAAAAAGTTCT
TCCCGATGGATTTAAGATCAATGGCCAAAAGGAGGATCCCCCCCACGAAT
TATGAATTTATCGCACCCCCCTGCACCATCCCGACTCCCAATTCTGGACT
CCCAATTACAGGTCCCGGCCCAATTTCCTTTCCCCCTCCCACCCCAACCA
AACCCAAAAACACCCCCCCGCATCACCAACCGACTCCCACGGGTGCACAC
ACTCCACCACCTCCAACACACCACGTCTCACCCCCCCCCACCCACCAACT
CCCAACCGCTCAACACCACTGGCCTCAAACACACAGCAACAACTACACCC
TAGTTTCCCACCCCCCCACCCCCCCACCCTCTCCTAAAACATCCCATCAA
CCACACACCAACCCCCGATCTCCCCGCTCCCCCCAGCCATCACGCCTATC
CAAAAACATCACCTTTCCTTACCTAGCTCATTGGTTCCCCCACAAACACA
ACTTACAACACTACATCCAACCCAACACAACGTCCCACCATCAACACAAT
AACACATGCCCCTCCTACCCGCACCCCTCCCCACCTCACCCACACCTATC
TATACACACCAACCATCACCAAACAAACACCTCCCACCACACTCACCACC
ACCCTC
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