DY260423

Overview
NameDY260423
Unique NameDY260423
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14430 contig Ccv1_Contig14430:756..2035. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260423 vs. ExPASy Swiss-Prot
Match: GCST_SOLTU (Aminomethyltransferase, mitochondrial OS=Solanum tuberosum GN=GDCST PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.196e-76
Identity = 140/185 (75.68%), Postives = 155/185 (83.78%), Query Frame = 2
Query:   29 FGIFNYLFLS-----ITILRYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKNNIAMGYVKSGLHNAGTKVKIEVRGKALQG 568
            FG F  L ++     +T   YTGEDGFEISVPSE A+DLAKA+LEKSEGK+RLTGLGARDSLRLEAGLCLYGNDMEQH TPVEAGLTWAIGKRRRAEGGFLGAE ILKQ++EGP +RRVGFF+ GPP RSHS++ D  G  IGEITSGGFSPCLK NIAMGYVK+G H AGT VKI +RGK+  G
Sbjct:  207 FGEFRVLDINGAPCFLTRTGYTGEDGFEISVPSENALDLAKALLEKSEGKIRLTGLGARDSLRLEAGLCLYGNDMEQHTTPVEAGLTWAIGKRRRAEGGFLGAEVILKQIEEGPKIRRVGFFSSGPPPRSHSEIQDSNGQNIGEITSGGFSPCLKKNIAMGYVKTGNHKAGTNVKIVIRGKSYDG 391          

HSP 2 Score: 26.5646 bits (57), Expect = 1.196e-76
Identity = 11/16 (68.75%), Postives = 12/16 (75.00%), Query Frame = 3
Query:  555 KPYKENITKMPFVPTK 602
            K Y   +TKMPFVPTK
Sbjct:  387 KSYDGVVTKMPFVPTK 402          
BLAST of DY260423 vs. ExPASy Swiss-Prot
Match: GCST_ARATH (Aminomethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=GDCST PE=1 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 1.679e-76
Identity = 147/196 (75.00%), Postives = 160/196 (81.63%), Query Frame = 2
Query:   29 FGIFNYLFLS-----ITILRYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKNNIAMGYVKSGLHNAGTKVKIEVRGKALQGKHHKNAICANQ 601
            FG F  L ++     +T   YTGEDGFEISVP E AVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQH++PVEAGLTWAIGKRRRAEGGFLGA+ IL+QL +GP +RRVGFF+ GPPARSHS+VHDE GN IGEITSGGFSP LK NIAMGYVKSG H  GTKVKI VRGK  +G   K    A +
Sbjct:  208 FGNFQILDINGSTCFLTRTGYTGEDGFEISVPDEHAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHISPVEAGLTWAIGKRRRAEGGFLGADVILQQLKDGPTIRRVGFFSSGPPARSHSEVHDESGNKIGEITSGGFSPNLKKNIAMGYVKSGQHKTGTKVKILVRGKPYEGSITKMPFVATK 403          
BLAST of DY260423 vs. ExPASy Swiss-Prot
Match: GCST_FLATR (Aminomethyltransferase, mitochondrial OS=Flaveria trinervia GN=GDCST PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 2.864e-76
Identity = 142/185 (76.76%), Postives = 157/185 (84.86%), Query Frame = 2
Query:   29 FGIFNYLFLS-----ITILRYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKNNIAMGYVKSGLHNAGTKVKIEVRGKALQG 568
            FG F  + +S     +T   YTGEDGFEISVPSE AVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQH+TPVEAGLTWAIGKRRRAEGGFLGAE ILKQ+ +GP +RRVG F+ GPPARSHS++ +EQG  IGE+TSGGFSPCLK NI MGYVKSGLH  GTK+KI +RGK  +G
Sbjct:  207 FGDFRIIDISGSKCFLTRTGYTGEDGFEISVPSENAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHITPVEAGLTWAIGKRRRAEGGFLGAEVILKQIADGPAIRRVGLFSTGPPARSHSEIQNEQGENIGEVTSGGFSPCLKKNIGMGYVKSGLHKPGTKLKIVIRGKTYEG 391          
BLAST of DY260423 vs. ExPASy Swiss-Prot
Match: GCST_FLAPR (Aminomethyltransferase, mitochondrial OS=Flaveria pringlei GN=GDCST PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 4.135e-75
Identity = 136/170 (80.00%), Postives = 151/170 (88.82%), Query Frame = 2
Query:   59 ITILRYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKNNIAMGYVKSGLHNAGTKVKIEVRGKALQG 568
            +T   YTGEDGFEISVPSE AVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQH+TPVEAGLTWAIGKRRRAEGGFLGA+ ILKQ+ +GP +RRVG F+ GPPARSHS++ +E+G  IGE+TSGGFSPCLK NI MGYVKSGLH  GTK+KI +RGK  +G
Sbjct:  222 LTRTGYTGEDGFEISVPSENAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHITPVEAGLTWAIGKRRRAEGGFLGADVILKQIADGPAIRRVGLFSTGPPARSHSEIQNEKGENIGEVTSGGFSPCLKKNIGMGYVKSGLHKPGTKLKIVIRGKTYEG 391          
BLAST of DY260423 vs. ExPASy Swiss-Prot
Match: GCST_FLAAN (Aminomethyltransferase, mitochondrial OS=Flaveria anomala GN=GDCST PE=3 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 4.135e-75
Identity = 136/170 (80.00%), Postives = 151/170 (88.82%), Query Frame = 2
Query:   59 ITILRYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKNNIAMGYVKSGLHNAGTKVKIEVRGKALQG 568
            +T   YTGEDGFEISVPSE AVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQH+TPVEAGLTWAIGKRRRAEGGFLGA+ ILKQ+ +GP +RRVG F+ GPPARSHS++ +E+G  IGE+TSGGFSPCLK NI MGYVKSGLH  GTK+KI +RGK  +G
Sbjct:  222 LTRTGYTGEDGFEISVPSENAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHITPVEAGLTWAIGKRRRAEGGFLGADVILKQIADGPAIRRVGLFSTGPPARSHSEIQNEKGENIGEVTSGGFSPCLKKNIGMGYVKSGLHKPGTKLKIVIRGKTYEG 391          
BLAST of DY260423 vs. ExPASy Swiss-Prot
Match: GCST_PEA (Aminomethyltransferase, mitochondrial OS=Pisum sativum GN=GDCST PE=1 SV=2)

HSP 1 Score: 281.567 bits (719), Expect = 7.054e-75
Identity = 138/185 (74.59%), Postives = 157/185 (84.86%), Query Frame = 2
Query:   29 FGIFNYLFLS-----ITILRYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKNNIAMGYVKSGLHNAGTKVKIEVRGKALQG 568
            FG F  L ++     +T   YTGEDGFEISVPSE  V+LAKA+LEKSEGK+RLTGLGARDSLRLEAGLCLYGND+EQH+TP+EAGLTWAIGKRRRAEGGFLGA+ ILKQL +GP +RRVGF + GPP RSHS++ DE GN IGE+TSGGFSPCLK NIA+GYVKSGLH AGTKVKI +RGK  +G
Sbjct:  208 FGEFRVLDINGSQCFLTRTGYTGEDGFEISVPSEHGVELAKALLEKSEGKIRLTGLGARDSLRLEAGLCLYGNDLEQHITPIEAGLTWAIGKRRRAEGGFLGADVILKQLADGPSIRRVGFISSGPPPRSHSEIQDEGGNNIGEVTSGGFSPCLKKNIAIGYVKSGLHKAGTKVKIIIRGKQNEG 392          
BLAST of DY260423 vs. ExPASy Swiss-Prot
Match: GCST_MESCR (Aminomethyltransferase, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCST PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 3.501e-74
Identity = 138/185 (74.59%), Postives = 156/185 (84.32%), Query Frame = 2
Query:   29 FGIFNYLFLS-----ITILRYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKNNIAMGYVKSGLHNAGTKVKIEVRGKALQG 568
            FG F +L ++     +T   YTGEDGFEISVP+E AVDLAKA+LEKSEGKVRLTG GARDSLRLEAGLCLYGND+EQH+TP+EAGLTWA+GKRRRAEGGFLGAE ILKQ+ +GPP RRVGF + GPPAR HS++ +E+G  IGEITSGGFSPCLK NIAMGYVKSG H AGTKV I VRGK  +G
Sbjct:  208 FGQFTFLDINGFPCYLTRTGYTGEDGFEISVPNEYAVDLAKAMLEKSEGKVRLTGRGARDSLRLEAGLCLYGNDLEQHITPIEAGLTWAVGKRRRAEGGFLGAEVILKQIADGPPQRRVGFISSGPPARGHSEIQNEKGESIGEITSGGFSPCLKKNIAMGYVKSGNHKAGTKVNILVRGKPYEG 392          
BLAST of DY260423 vs. ExPASy Swiss-Prot
Match: GCST_SCHPO (Probable aminomethyltransferase, mitochondrial OS=Schizosaccharomyces pombe GN=gcv1 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 2.447e-43
Identity = 88/161 (54.66%), Postives = 114/161 (70.81%), Query Frame = 2
Query:   74 YTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKNNIAMGYVKSGLHNAGTKVKIEVRGK 556
            YTGEDGFE+S+P E +VD A  +L  ++ +VR  GLGARD+LRLEAG+CLYG+D++   +PVE  L+W IGKRRR EGGF+G+ +ILK+L +GP  RRVGF     PAR H    +  G  +G++TSG  SP L  NIAMGY+ +GLH  GT   I+VR K
Sbjct:  212 YTGEDGFEVSIPEEVSVDFASTLL--ADTRVRPIGLGARDTLRLEAGMCLYGSDIDDTTSPVEGSLSWIIGKRRRKEGGFVGSSRILKELKDGPSRRRVGFIVEKVPAR-HGSAVEVDGVEVGQVTSGCPSPTLGKNIAMGYISTGLHQVGTPAHIKVRNK 369          
BLAST of DY260423 vs. ExPASy Swiss-Prot
Match: GCST_CANFA (Aminomethyltransferase, mitochondrial OS=Canis familiaris GN=AMT PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.214e-42
Identity = 96/185 (51.89%), Postives = 119/185 (64.32%), Query Frame = 2
Query:    2 FIISCMNRLFGIFNYLFLSITILRYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKNNIAMGYVKSGLHNAGTKVKIEVRGK 556
            F+ S +  +FG+       +T   YTGEDG EISVP+  AV LA A+LE  E  V+L GL ARDSLRLEAGLCLYG+D+++H TPVE  L+W +GKRRRA   F GA  I+ QL      RRVG    G P R+HS + + +G  IG +TSG  SPCLK N+AMGYV S     GT + +EVR K
Sbjct:  204 FMTSAVMEVFGVSG---CRVTRCGYTGEDGVEISVPAAAAVRLAAALLENPE--VKLAGLAARDSLRLEAGLCLYGSDIDEHTTPVEGSLSWTLGKRRRAAMDFPGASVIIAQLKGKVQRRRVGLTCEGAPVRAHSPILNMEGTVIGTVTSGCPSPCLKKNVAMGYVPSEYSRPGTPLLVEVRRK 383          
BLAST of DY260423 vs. ExPASy Swiss-Prot
Match: GCST_BOVIN (Aminomethyltransferase, mitochondrial OS=Bos taurus GN=AMT PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 6.027e-42
Identity = 94/185 (50.81%), Postives = 116/185 (62.70%), Query Frame = 2
Query:    2 FIISCMNRLFGIFNYLFLSITILRYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKNNIAMGYVKSGLHNAGTKVKIEVRGK 556
            F+ S +  +FG+       +T   YTGEDG EISVP+  AV LA A+L+  E  V+L GL ARDSLRLEAGLCLYGND+++H TPVE  L+W +GKRRRA   F GA  I+ QL      RRVG    G P R+ S +   +G  IG +TSG  SPCLK N+AMGYV       GT + +EVR K
Sbjct:  198 FMTSAVMEVFGVSG---CRVTRCGYTGEDGVEISVPAAEAVHLAAALLKNPE--VKLAGLAARDSLRLEAGLCLYGNDIDEHTTPVEGSLSWTLGKRRRAAMDFPGASVIVPQLKSKAQRRRVGLMCDGAPVRAQSPILSPEGTVIGAVTSGCPSPCLKKNVAMGYVPYEYSRPGTPLLVEVRRK 377          
The following BLAST results are available for this feature:
BLAST of DY260423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_SOLTU1.196e-7675.68Aminomethyltransferase, mitochondrial OS=Solanum t... [more]
GCST_ARATH1.679e-7675.00Aminomethyltransferase, mitochondrial OS=Arabidops... [more]
GCST_FLATR2.864e-7676.76Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_FLAPR4.135e-7580.00Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_FLAAN4.135e-7580.00Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_PEA7.054e-7574.59Aminomethyltransferase, mitochondrial OS=Pisum sat... [more]
GCST_MESCR3.501e-7474.59Aminomethyltransferase, mitochondrial OS=Mesembrya... [more]
GCST_SCHPO2.447e-4354.66Probable aminomethyltransferase, mitochondrial OS=... [more]
GCST_CANFA1.214e-4251.89Aminomethyltransferase, mitochondrial OS=Canis fam... [more]
GCST_BOVIN6.027e-4250.81Aminomethyltransferase, mitochondrial OS=Bos tauru... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YH05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260423 ID=DY260423; Name=DY260423; organism=Citrus clementina; type=EST; length=1280bp
CTTTATTATAAGTTGTATGAATAGGCTGTTCGGGATTTTTAACTACCTTT
TTTTGTCTATTACAATTCTCAGGTACACTGGTGAAGATGGATTTGAAATC
TCTGTTCCATCTGAGCGTGCAGTGGATCTTGCCAAAGCAATTCTGGAGAA
ATCTGAAGGAAAGGTGAGGTTGACAGGTCTCGGTGCTCGAGACAGTCTCC
GACTTGAAGCTGGCTTATGTTTATATGGTAATGACATGGAACAACACGTG
ACACCTGTAGAAGCTGGACTGACATGGGCCATAGGAAAGAGGAGGAGAGC
AGAAGGTGGCTTTCTAGGTGCTGAGAAAATACTCAAACAACTTGACGAAG
GTCCGCCAGTCAGACGTGTTGGATTCTTCGCTGGAGGTCCGCCTGCCAGA
TCACACAGTAAGGTTCATGATGAGCAAGGGAATCCCATTGGAGAAATTAC
CAGTGGAGGATTCAGCCCCTGCCTCAAGAACAATATAGCCATGGGATATG
TAAAATCTGGATTGCACAACGCCGGCACCAAAGTTAAGATTGAGGTTCGA
GGAAAAGCCCTACAAGGAAAACATCACAAAAATGCCATTTGTGCCAACCA
AATAACTACAAACCCCTCCTAGTACCTCCTTGTTGGTTCCGCCTAAGGAA
ACCACTACTCCATTTCCCGTTTTCACTTGTTCCAAAACCCATGACCGCCC
CGAGATTACCGGTCTTTTCTTGCTAGACATTCTTTACTTCCCGCCAAACC
CTTATGATTTCCTGTTCCCCGTACACAAAACAATCCAACCTTCAACCCCC
CACCCCACCAAACACTCCCCCCCTCCCCCCCCCACCGCGACTCTCTCACC
CGCACCCCCCCCCTTCCCTTCACTCCACCACCAAAACTCTAACACAACCC
CCCCATCCCCGTCCACACCATATTCCCTCGCCACCACACACCCCCCCTTT
GAACTCACCTCCTTCCCCCAGCTGACCGCCGTCCATCCTTGCCTTATCTT
CTCACTACGTCCCTCTCCCCTTTACCCCTCACCCTCTGTTCCGCCTCCAC
GTTCACCCATCCCCACTCCCCCCCCTCTACCCCACACCTCCCACGTTTCT
CACTCACTCCACACCTTGTCTCCCAACCCCACCAGCCCACGCCTACTCCC
CCTCTGCCCCCCTCCTTCCCTTGTCCGCATACACTATTGCACCTCATACT
CTCCCCTTGACCCTCTAAAACGATCCTCTGCTACCCACCCTCACTCCATA
GCCACACGCCTCACCCCGTCCCAACGATCA
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