DY260425

Overview
NameDY260425
Unique NameDY260425
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1359
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1523 contig Ccv1_Contig1523:1..1359. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260425 vs. ExPASy Swiss-Prot
Match: AB7A_ARATH (ABC transporter A family member 7 OS=Arabidopsis thaliana GN=ABCA7 PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.194e-35
Identity = 71/92 (77.17%), Postives = 83/92 (90.22%), Query Frame = 3
Query:   81 RYGGSYVFTMTTSADHEEEVESMVKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHAQAF 356
            RYGGSYVFTMTTS++HE+ VE ++K +SP A KIY I+GTQKFELPK+EVR+S+VFQAVE+AKS FTVFAWGLADTTLEDVFIKV R+ QAF
Sbjct:  840 RYGGSYVFTMTTSSEHEQNVEKLIKDVSPNAKKIYHIAGTQKFELPKEEVRISEVFQAVEKAKSNFTVFAWGLADTTLEDVFIKVVRNGQAF 931          
BLAST of DY260425 vs. ExPASy Swiss-Prot
Match: AB12A_ARATH (ABC transporter A family member 12 OS=Arabidopsis thaliana GN=ABCA12 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.194e-35
Identity = 74/100 (74.00%), Postives = 87/100 (87.00%), Query Frame = 3
Query:   66 KS*RLRYGGSYVFTMTTSADHEEEVESMVKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHAQAFEDL 365
            K  + RYGGSYVFTMTTS+ HEEEVE +V+ +SP A KIY ++GTQKFELPKQEVR+++VF+AVE+AK+ FTVFAWGLADTTLEDVFIKVAR AQAF  L
Sbjct:  817 KELKSRYGGSYVFTMTTSSKHEEEVERLVESVSPNAKKIYHLAGTQKFELPKQEVRIAEVFRAVEKAKANFTVFAWGLADTTLEDVFIKVARTAQAFISL 916          
BLAST of DY260425 vs. ExPASy Swiss-Prot
Match: AB3A_ARATH (ABC transporter A family member 3 OS=Arabidopsis thaliana GN=ABCA3 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 2.491e-33
Identity = 68/92 (73.91%), Postives = 80/92 (86.96%), Query Frame = 3
Query:   81 RYGGSYVFTMTTSADHEEEVESMVKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHAQAF 356
            RYGGSYV TMTTS++HE++VE +V+ +SP   KIY I+GTQKFE+PK EVR+S+VFQ VE+AKS F VFAWGLADTTLEDVFIKVAR AQAF
Sbjct:  483 RYGGSYVLTMTTSSEHEKDVEMLVQEVSPNVKKIYHIAGTQKFEIPKDEVRISEVFQVVEKAKSNFKVFAWGLADTTLEDVFIKVARTAQAF 574          
BLAST of DY260425 vs. ExPASy Swiss-Prot
Match: AB10A_ARATH (ABC transporter A family member 10 OS=Arabidopsis thaliana GN=ABCA10 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 2.491e-33
Identity = 67/95 (70.53%), Postives = 80/95 (84.21%), Query Frame = 3
Query:   81 RYGGSYVFTMTTSADHEEEVESMVKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHAQAFEDL 365
            RYGGSYVFTMTTS +HEE+VE MVK +SP + ++Y ++GTQKFE+PKQEV ++DVF  VE+ KS+FTVFAWGLADTTLEDVF KVA  AQAF  L
Sbjct:  814 RYGGSYVFTMTTSVEHEEKVERMVKHISPNSKRVYHLAGTQKFEIPKQEVMIADVFFMVEKVKSKFTVFAWGLADTTLEDVFFKVATTAQAFNSL 908          
BLAST of DY260425 vs. ExPASy Swiss-Prot
Match: AB5A_ARATH (ABC transporter A family member 5 OS=Arabidopsis thaliana GN=ABCA5 PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 9.464e-33
Identity = 68/96 (70.83%), Postives = 82/96 (85.42%), Query Frame = 3
Query:   66 KS*RLRYGGSYVFTMTTSADHEEEVESMVKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHAQA 353
            K  + RYGGSYV TMTT ++HE++VE +V+ +SP A KIY I+GTQKFE+PK+EVR+S+VFQAVE+AK  F VFAWGLADTTLEDVFIKVAR AQA
Sbjct:  836 KELKARYGGSYVLTMTTPSEHEKDVEMLVQDVSPNAKKIYHIAGTQKFEIPKEEVRISEVFQAVEKAKDNFRVFAWGLADTTLEDVFIKVARTAQA 931          
BLAST of DY260425 vs. ExPASy Swiss-Prot
Match: AB4A_ARATH (ABC transporter A family member 4 OS=Arabidopsis thaliana GN=ABCA4 PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 2.754e-32
Identity = 66/96 (68.75%), Postives = 82/96 (85.42%), Query Frame = 3
Query:   66 KS*RLRYGGSYVFTMTTSADHEEEVESMVKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHAQA 353
            K  + RYGGSYV TMTTS++HE++VE +++ +SP A KIY I+GTQKFE+PK EVR++++FQAVE+AK  F VFAWGLADTTLEDVFIKVAR AQA
Sbjct:  837 KELKARYGGSYVLTMTTSSEHEKDVEMLIQDVSPNAKKIYHIAGTQKFEIPKDEVRIAELFQAVEKAKGNFRVFAWGLADTTLEDVFIKVARTAQA 932          
BLAST of DY260425 vs. ExPASy Swiss-Prot
Match: AB6A_ARATH (ABC transporter A family member 6 OS=Arabidopsis thaliana GN=ABCA6 PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 4.396e-30
Identity = 62/87 (71.26%), Postives = 75/87 (86.21%), Query Frame = 3
Query:   81 RYGGSYVFTMTTSADHEEEVESMVKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVAR 341
            RYGGSYV T+TTS +HE++VE++V+ +S  A KIY I+GTQKFE PK+EVR+S+VFQAVE AK  FTVFAWG ADTTLEDVFIKVA+
Sbjct:  837 RYGGSYVLTITTSPEHEKDVETLVQEVSSNARKIYHIAGTQKFEFPKEEVRISEVFQAVENAKRNFTVFAWGFADTTLEDVFIKVAK 923          
BLAST of DY260425 vs. ExPASy Swiss-Prot
Match: AB8A_ARATH (ABC transporter A family member 8 OS=Arabidopsis thaliana GN=ABCA8 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 4.115e-28
Identity = 60/92 (65.22%), Postives = 76/92 (82.61%), Query Frame = 3
Query:   66 KS*RLRYGGSYVFTMTTSADHEEEVESMVKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVAR 341
            K  + RYGGSYV T+TTS +HE+EVE +V  +S  A KIY+ +GTQKFELPKQEV++ +VF+A+E+AK+ F V AWGLADTTLEDVFIKVA+
Sbjct:  808 KELKSRYGGSYVLTVTTSEEHEKEVEQLVHNISTNAKKIYRTAGTQKFELPKQEVKIGEVFKALEKAKTMFPVVAWGLADTTLEDVFIKVAQ 899          
The following BLAST results are available for this feature:
BLAST of DY260425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
AB7A_ARATH1.194e-3577.17ABC transporter A family member 7 OS=Arabidopsis t... [more]
AB12A_ARATH1.194e-3574.00ABC transporter A family member 12 OS=Arabidopsis ... [more]
AB3A_ARATH2.491e-3373.91ABC transporter A family member 3 OS=Arabidopsis t... [more]
AB10A_ARATH2.491e-3370.53ABC transporter A family member 10 OS=Arabidopsis ... [more]
AB5A_ARATH9.464e-3370.83ABC transporter A family member 5 OS=Arabidopsis t... [more]
AB4A_ARATH2.754e-3268.75ABC transporter A family member 4 OS=Arabidopsis t... [more]
AB6A_ARATH4.396e-3071.26ABC transporter A family member 6 OS=Arabidopsis t... [more]
AB8A_ARATH4.115e-2865.22ABC transporter A family member 8 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YH08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260425 ID=DY260425; Name=DY260425; organism=Citrus clementina; type=EST; length=1359bp
TTGGAATTCGAAGGCCAATAGCTCTTCTCTCTTTTCGCCCACTTTCGTAC
AAAAAAGTTCGGCGAAAGAGTTAAAGGCTAAGGTATGGTGGATCATATGT
GTTTACAATGACCACATCCGCAGATCACGAGGAAGAAGTGGAGAGTATGG
TAAAGCGACTCTCTCCGGGTGCTAATAAGATATATCAAATATCTGGAACC
CAAAAATTCGAGCTTCCAAAACAAGAGGTAAGAGTTTCAGATGTTTTCCA
AGCTGTTGAAGAAGCAAAGAGCAGGTTCACTGTTTTCGCATGGGGTTTGG
CTGACACCACCCTGGAGGATGTGTTCATCAAGGTCGCCCGCCATGCTCAG
GCATTTGAGGATCTTCCATGATTCTAATTATGTTCCTAGTTCATGTTGCT
TAGTATATTGCTTCTGTATTTTCCAAAAAAAATTTAGAGATTGATTAAGT
CTATATTCTTGTTATTTTGAGATTGTTTTTAGGAAGGAAATGTACATTAG
AGAAATTATCCGCTCACTACTCTTTTGGATTTATAAAGCTACTCCTTTCG
GTCCACGCTCCCATACCCTCCGCACAACTTTTAAACGACAAAAACATTCC
TCCTCGTTCTCTTCCCCCCCCACCCCCCCCCCCCCACCCCCCCCTCCCTG
CCTCTCCTTCTCCTTCACACACAACCTAGCCCGCAATCTCTCCCCACCCA
CCTCTCCCCTCTCACTCACCCACCCCCACCCCCTTCCCCCCCCACTCCCT
CACCCCCCCTACCCCCACCCCCCCTCCCCCACCCCCCTCCCCCCCCCCCC
CCCCTCACACCCCCACCCTTCCCCACCCCCCCCAACCTAAACAAACACCT
CACCCCACTCCCCCTTCCACTCCCCCATGTCCTCCCCCTGCCTATACCCC
CCCCCTCCCTCATTCACCACCTCCCCCCCCCCCCCCCCCACTCCACTCCT
CACCCGTCCCCCCCCCCACTACCCCTACCACCTAGGCGAAACACACCCAC
TCAACCAGTTCTCCCTCCCCCCGCCCCCTATCCCCCGCCGCCCTCTCCGC
ACCCCCCTTCCCCGCCCCCTCCACCATCCTCCACTCCTTCCCAATACCAG
CCCACCTAGACCCGTGCTCACAGCAAAAACCATCGCCACACCAACCACTC
GACCCTCGACCATCCAGCGNCTCGTTTCCCGTAGCCGCCTGCCCCACAAG
TTCCCGCAACCTCCCCCCCCCCCCATGCCACGCCTCCCTCCCCCCATCCT
CCCTCCTGCCCCAACACCGGCTTACCCGCCCACCCCCCCCCCCCCCCCCC
CCCCCATCCCCCCACCTACCCCCGCACCCAAACAACAGCTACACTCACTC
GACCCTCCT
back to top