DY260452

Overview
NameDY260452
Unique NameDY260452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1225
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1537 contig Ccv1_Contig1537:1..1225. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260452 vs. ExPASy Swiss-Prot
Match: UFD1_DICDI (Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum GN=ufd1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.848e-14
Identity = 54/164 (32.93%), Postives = 85/164 (51.83%), Query Frame = 3
Query:  213 SGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMVDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGCAELPNLKAVVETSLPQHATLSQDDVLPVNYGEWACKLKSP*VETLLRLSVLGIDI 704
            SG KI LPPS    LS      + P+ F++S        N + G+K     +H GVLEF A+EG   LP  + +NL         F++++   L KGT+ K+QP      ++ N KAV+E SL + ATL++DD + ++Y      LK   ++    +S++  D+
Sbjct:   46 SGGKILLPPSALNALSRLNI--QYPMLFEIS--------NPISGKK-----SHCGVLEFIAEEGICYLPLWMMQNL---QLKEGEFIDIKNATLAKGTFVKIQPRTSNFIDISNPKAVLENSLRKFATLTKDDEIMIDYNNTKYYLKVVELKPANAISIIEADV 191          
BLAST of DY260452 vs. ExPASy Swiss-Prot
Match: UFD1_RAT (Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus GN=Ufd1l PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.120e-13
Identity = 53/146 (36.30%), Postives = 73/146 (50.00%), Query Frame = 3
Query:  216 GDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMVDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGCAELPNLKAVVETSLPQHATLSQDDVLPVNYGEWACKLK 653
            G KI +PPS   +LS        P+ FKL+              K S+R TH GVLEF ADEG   LP  + +NL   +      V+V  V L   TY+K QP+     ++ N KAV+E +L   A L+  DV+ +NY E   +L+
Sbjct:   43 GGKIIMPPSALDQLSRLNI--TYPMLFKLT-------------NKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEE---GGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELR 170          
BLAST of DY260452 vs. ExPASy Swiss-Prot
Match: UFD1_HUMAN (Ubiquitin fusion degradation protein 1 homolog OS=Homo sapiens GN=UFD1L PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.120e-13
Identity = 53/146 (36.30%), Postives = 73/146 (50.00%), Query Frame = 3
Query:  216 GDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMVDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGCAELPNLKAVVETSLPQHATLSQDDVLPVNYGEWACKLK 653
            G KI +PPS   +LS        P+ FKL+              K S+R TH GVLEF ADEG   LP  + +NL   +      V+V  V L   TY+K QP+     ++ N KAV+E +L   A L+  DV+ +NY E   +L+
Sbjct:   43 GGKIIMPPSALDQLSRLNI--TYPMLFKLT-------------NKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEE---GGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELR 170          
BLAST of DY260452 vs. ExPASy Swiss-Prot
Match: UFD1_MOUSE (Ubiquitin fusion degradation protein 1 homolog OS=Mus musculus GN=Ufd1l PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.910e-13
Identity = 52/146 (35.62%), Postives = 73/146 (50.00%), Query Frame = 3
Query:  216 GDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMVDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGCAELPNLKAVVETSLPQHATLSQDDVLPVNYGEWACKLK 653
            G KI +PPS   +LS        P+ FKL+              K S+R TH GVLEF ADEG   LP  + +NL   +      V+V  V L   TY+K QP+     ++ N KAV+E +L   A ++  DV+ +NY E   +L+
Sbjct:   43 GGKIIMPPSALDQLSRLNI--TYPMLFKLT-------------NKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEE---GGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACMTTGDVIAINYNEKIYELR 170          
BLAST of DY260452 vs. ExPASy Swiss-Prot
Match: UFD1_YEAST (Ubiquitin fusion degradation protein 1 OS=Saccharomyces cerevisiae GN=UFD1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.048e-11
Identity = 48/146 (32.88%), Postives = 74/146 (50.68%), Query Frame = 3
Query:  216 GDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMVDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGCAELPNLKAVVETSLPQHATLSQDDVLPVNYGEWACKLK 653
            G KI LPPS  ++LS      + P+ FKL+               E+ R TH GVLEF A+EG V LP  +   L        S +++    +P G + KL+P+ +   ++ + KAV+E  L   +TL+ DDV+ ++Y     K+K
Sbjct:   45 GGKIFLPPSALSKLSMLNI--RYPMLFKLTA-------------NETGRVTHGGVLEFIAEEGRVYLPQWMMETL---GIQPGSLLQISSTDVPLGQFVKLEPQSVDFLDISDPKAVLENVLRNFSTLTVDDVIEISYNGKTFKIK 172          
The following BLAST results are available for this feature:
BLAST of DY260452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
UFD1_DICDI3.848e-1432.93Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_RAT1.120e-1336.30Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_HUMAN1.120e-1336.30Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_MOUSE1.910e-1335.62Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_YEAST1.048e-1132.88Ubiquitin fusion degradation protein 1 OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YI12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260452 ID=DY260452; Name=DY260452; organism=Citrus clementina; type=EST; length=1225bp
GGAAAGAAAGAGCGAGATTGAAGCTTGAAAGAGAGAAGAAGGCTAAAGAA
GAGGCTAAGAAACAACGTGAAGCCATTGAAGCTGCCCAGAGATCCCGTAG
ACTCGATGCCATTGATGCCCAGCTCAAGGCTGATCAAGAGATGCAGGAAA
GTTTGCTTGCTGGAGGAGGAATTGTGTTTTATCGTACGTTAGAAGCTTTG
CCTTTTCAGGGCAGTGGAGATAAGATCAAATTGCCTCCGTCCTGTTTCAC
TGAATTGTCTGGTCAAGGTGCATTTGATAAGGGTCCTCTGCATTTCAAAT
TATCAGTGCTTCACCAAGAAGGTCCATCGAATATGGTAGATGGCGAGAAA
GAAAGTAATCGGAGCACCCATTCAGGTGTTTTGGAGTTCACTGCTGATGA
AGGTTTTGTTGGACTTCCTCCTCATGTATGGAGAAATTTATTCCCTAGTG
ATACTCCGAACAATTCGTTTGTTGAAGTTCGCTATGTTCGACTGCCGAAA
GGAACTTATGCAAAACTTCAGCCTGAGGGGATTGGTTGTGCAGAATTACC
CAATCTAAAGGCTGTTGTTGAAACAAGCCTTCCCCAGCATGCCACCCTTT
CTCAAGATGATGTACTCCCTGTCAATTATGGGGAGTGGGCATGCAAGTTG
AAGAGTCCCTGAGTTGAAACCCTCCTCAGGCTATCTGTCCTGGGAATAGA
TATTGGGGGCGAAATATTGGGGTCCGATGAAAAGCTCGCCGGGGACGGGA
ACATAAACTCTTAGCCCCCTTTTTTTCGGAGAGGCCGGATCCGGAAACGG
TTGGAAACGGAATTAGGTGTTTTCCCGCTTTCCAATTTGTGCGGATCCCC
CTAACAAAACTCGTCCCGGGGGGGAAAAGGGCTGAGGCCGGGGTGAGATA
CAAAAAAGAAGGGAGCAACCCAACTGTCTTACGTGGCACGGATTACCCTC
CTTTCTTAACCCTTGCGCTCACACAATGCGTCACTCCGTCTGCTCGCTGA
CTTTGTATTTTATATCTCTTATGCCCACGAACTTCCCTTGTTCGTGTGGC
AAGCTAGCCACACCCCACTGTCTACGGCTGCTCAGCCGCACGCGTCCAAC
CGACCCGACGTCAGTCCTCCTCCGCCTCCTCAACACCACGCCTCCCGCTC
GGAGGTCGTCCCACCGTCCACTCCCAGCCCCGCCAGATTCCTACCATCTG
AGTAAGCGCACATTCCAACCCCGGT
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